|| Interspecific Comparative Clustering and Annotation foR Est
Fri Dec 14 10:01:25 CET 2018
This tool integrates comparative sequence analysis, mapping information and primer/overgo design in order to facilitate
the comparative mapping between query species (see the taxonomic tree) and completely sequenced organisms - model organisms
(Homo sapiens for animals and Arabidopsis thaliana for plants). The Expressed Sequenced Tags (ESTs) and mRNA
sequences of public databases of one query species are first compared to the representative transcipts of the UniGene clusters
or MIPS cDNA of the model organism and the results are displayed according to the location of the genes on the chromosomes
of the reference organism. Gene structure information and sequence similarities are combined in a graphical representation
in order to pinpoint the nature of the transcript query sequence. Presently, the method is available for two model organisms
: homo sapiens and arabidopsis thaliana and coming soon for Oryza sativa.
Warning !! if you use IE 5.0 on a Mac, some dynamic links (mouse-over) may not work.
If you wish to cite this web site please cite the following paper :
Muller C, Denis M, Gentzbittel L and Faraut T. The Iccare Web server: an attempt to merge sequence and mapping information for plant and animal
Nucl. Acids. Res.2004, 32: W429-W434.
For any questions or comments please contact us :
Warning if you are not using a browser that supports tables such as Netscape 1.1 or later then this page will probably be very difficult to read.
© Iccare : Laboratoire de génétique cellulaire - INRA &
Biotechnologies et d'Amélioration des Plantes - INP-ENSAT.
Created by Faraut & Muller 02/2003 .