library(ggplot2) library(phyloseq) library(reshape2) library(ape) library(gridExtra) source("./R_scripts/graphical_methods.R") source("./R_scripts/tree_methods.R") source("./R_scripts/plot_merged_trees.R") source("./R_scripts/specificity_methods.R") source("./R_scripts/ternary_plot.R") source("./R_scripts/richness.R") source("./R_scripts/edgePCA.R") source("./R_scripts/copy_number_correction.R") source("./R_scripts/import_frogs.R") source("./R_scripts/prevalence.R")