gatk --java-options -Xmx7g BaseRecalibrator -I SRR7062654.md.bam -O SRR7062654.md.recal.table --tmp-dir . -R Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa --known-sites Gallus_gallus_incl_consequences_chr25-26.vcf --verbosity INFO
gatk --java-options -Xmx7g BaseRecalibrator -I SRR7062655.md.bam -O SRR7062655.md.recal.table --tmp-dir . -R Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa --known-sites Gallus_gallus_incl_consequences_chr25-26.vcf --verbosity INFO