[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 444446 sequences (40000140 bp)...
[M::process] read 444446 sequences (40000140 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (28, 209844, 40, 9)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (346, 3496, 9735)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 28513)
[M::mem_pestat] mean and std.dev: (4735.46, 4461.01)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 37902)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (468, 479, 490)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (424, 534)
[M::mem_pestat] mean and std.dev: (478.95, 15.55)
[M::mem_pestat] low and high boundaries for proper pairs: (402, 556)
[M::mem_pestat] analyzing insert size distribution for orientation RF...
[M::mem_pestat] (25, 50, 75) percentile: (182, 2092, 2116)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5984)
[M::mem_pestat] mean and std.dev: (1403.65, 1129.76)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 7918)
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_pestat] skip orientation FF
[M::mem_pestat] skip orientation RF
[M::mem_process_seqs] Processed 444446 reads in 14.749 CPU sec, 3.558 real sec
[M::process] read 444446 sequences (40000140 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (27, 209694, 42, 9)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (317, 328, 424)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (103, 638)
[M::mem_pestat] mean and std.dev: (323.76, 50.59)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 745)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (468, 479, 490)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (424, 534)
[M::mem_pestat] mean and std.dev: (478.87, 15.48)
[M::mem_pestat] low and high boundaries for proper pairs: (402, 556)
[M::mem_pestat] analyzing insert size distribution for orientation RF...
[M::mem_pestat] (25, 50, 75) percentile: (329, 1911, 2124)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5714)
[M::mem_pestat] mean and std.dev: (1500.71, 1098.45)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 7509)
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_pestat] skip orientation FF
[M::mem_pestat] skip orientation RF
[M::mem_process_seqs] Processed 444446 reads in 15.207 CPU sec, 3.660 real sec
[M::process] read 444446 sequences (40000140 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (29, 209802, 35, 9)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (333, 371, 9707)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 28455)
[M::mem_pestat] mean and std.dev: (3464.41, 4289.96)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 37829)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (468, 479, 490)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (424, 534)
[M::mem_pestat] mean and std.dev: (478.91, 15.48)
[M::mem_pestat] low and high boundaries for proper pairs: (402, 556)
[M::mem_pestat] analyzing insert size distribution for orientation RF...
[M::mem_pestat] (25, 50, 75) percentile: (254, 2097, 2124)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5864)
[M::mem_pestat] mean and std.dev: (1626.00, 1172.45)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 7734)
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_pestat] skip orientation FF
[M::mem_pestat] skip orientation RF
[M::mem_process_seqs] Processed 444446 reads in 15.112 CPU sec, 3.629 real sec
[M::process] read 143414 sequences (12907260 bp)...
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (29, 209778, 31, 10)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (329, 367, 9711)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 28475)
[M::mem_pestat] mean and std.dev: (2946.28, 4212.47)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 37857)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (468, 479, 490)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (424, 534)
[M::mem_pestat] mean and std.dev: (478.90, 15.47)
[M::mem_pestat] low and high boundaries for proper pairs: (402, 556)
[M::mem_pestat] analyzing insert size distribution for orientation RF...
[M::mem_pestat] (25, 50, 75) percentile: (246, 2090, 3010)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8538)
[M::mem_pestat] mean and std.dev: (1658.81, 1300.07)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 11302)
[M::mem_pestat] analyzing insert size distribution for orientation RR...
[M::mem_pestat] (25, 50, 75) percentile: (9691, 9724, 9825)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (9423, 10093)
[M::mem_pestat] mean and std.dev: (9760.75, 65.23)
[M::mem_pestat] low and high boundaries for proper pairs: (9289, 10227)
[M::mem_pestat] skip orientation FF
[M::mem_pestat] skip orientation RF
[M::mem_pestat] skip orientation RR
[M::mem_process_seqs] Processed 444446 reads in 14.682 CPU sec, 3.642 real sec
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 67692, 7, 3)
[M::mem_pestat] analyzing insert size distribution for orientation FF...
[M::mem_pestat] (25, 50, 75) percentile: (322, 367, 9682)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 28402)
[M::mem_pestat] mean and std.dev: (3161.70, 4316.06)
[M::mem_pestat] low and high boundaries for proper pairs: (1, 37762)
[M::mem_pestat] analyzing insert size distribution for orientation FR...
[M::mem_pestat] (25, 50, 75) percentile: (468, 478, 489)
[M::mem_pestat] low and high boundaries for computing mean and std.dev: (426, 531)
[M::mem_pestat] mean and std.dev: (478.68, 15.45)
[M::mem_pestat] low and high boundaries for proper pairs: (405, 552)
[M::mem_pestat] skip orientation RF as there are not enough pairs
[M::mem_pestat] skip orientation RR as there are not enough pairs
[M::mem_pestat] skip orientation FF
[M::mem_process_seqs] Processed 143414 reads in 4.987 CPU sec, 1.228 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -R @RG\tID:1\tSM:SRR7062655\tPL:illumina\tLB:SRR7062655\tPU:1 -t4 Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa SRR7062655_R1.fastq.gz SRR7062655_R2.fastq.gz
[main] Real time: 16.396 sec; CPU: 65.350 sec