## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates --INPUT SRR7062654.bam --OUTPUT SRR7062654.md.bam --METRICS_FILE SRR7062654.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Nov 07 11:08:06 CET 2023

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062654	1643	992311	698	1643	278	27580	0	0.027911	17519036

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	937847	937847
2.0	1.944932	26205	26205
3.0	2.83783	663	663
4.0	3.681557	15	15
5.0	4.478823	1	1
6.0	5.232185	0	0
7.0	5.944061	0	0
8.0	6.616736	0	0
9.0	7.252368	0	0
10.0	7.852998	0	0
11.0	8.420552	0	0
12.0	8.956853	0	0
13.0	9.463621	0	0
14.0	9.942482	0	0
15.0	10.394973	0	0
16.0	10.822547	0	0
17.0	11.226576	0	0
18.0	11.608355	0	0
19.0	11.969111	0	0
20.0	12.310001	0	0
21.0	12.632119	0	0
22.0	12.936499	0	0
23.0	13.224117	0	0
24.0	13.495897	0	0
25.0	13.75271	0	0
26.0	13.995382	0	0
27.0	14.22469	0	0
28.0	14.441371	0	0
29.0	14.646119	0	0
30.0	14.839593	0	0
31.0	15.022412	0	0
32.0	15.195164	0	0
33.0	15.358403	0	0
34.0	15.512653	0	0
35.0	15.658409	0	0
36.0	15.796138	0	0
37.0	15.926283	0	0
38.0	16.049261	0	0
39.0	16.165467	0	0
40.0	16.275274	0	0
41.0	16.379034	0	0
42.0	16.47708	0	0
43.0	16.569727	0	0
44.0	16.657272	0	0
45.0	16.739996	0	0
46.0	16.818165	0	0
47.0	16.892029	0	0
48.0	16.961826	0	0
49.0	17.027779	0	0
50.0	17.090101	0	0
51.0	17.14899	0	0
52.0	17.204637	0	0
53.0	17.257219	0	0
54.0	17.306905	0	0
55.0	17.353856	0	0
56.0	17.398221	0	0
57.0	17.440143	0	0
58.0	17.479756	0	0
59.0	17.517189	0	0
60.0	17.552559	0	0
61.0	17.585982	0	0
62.0	17.617565	0	0
63.0	17.647408	0	0
64.0	17.675608	0	0
65.0	17.702255	0	0
66.0	17.727434	0	0
67.0	17.751227	0	0
68.0	17.77371	0	0
69.0	17.794955	0	0
70.0	17.81503	0	0
71.0	17.833999	0	0
72.0	17.851924	0	0
73.0	17.868861	0	0
74.0	17.884866	0	0
75.0	17.89999	0	0
76.0	17.914281	0	0
77.0	17.927785	0	0
78.0	17.940545	0	0
79.0	17.952602	0	0
80.0	17.963996	0	0
81.0	17.974762	0	0
82.0	17.984935	0	0
83.0	17.994548	0	0
84.0	18.003632	0	0
85.0	18.012215	0	0
86.0	18.020326	0	0
87.0	18.02799	0	0
88.0	18.035233	0	0
89.0	18.042076	0	0
90.0	18.048542	0	0
91.0	18.054653	0	0
92.0	18.060427	0	0
93.0	18.065882	0	0
94.0	18.071038	0	0
95.0	18.07591	0	0
96.0	18.080513	0	0
97.0	18.084863	0	0
98.0	18.088973	0	0
99.0	18.092857	0	0
100.0	18.096527	0	0