1921919 + 0 in total (QC-passed reads + QC-failed reads) 1921198 + 0 primary 0 + 0 secondary 721 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 1920297 + 0 mapped (99.92% : N/A) 1919576 + 0 primary mapped (99.92% : N/A) 1921198 + 0 paired in sequencing 960599 + 0 read1 960599 + 0 read2 1894518 + 0 properly paired (98.61% : N/A) 1917954 + 0 with itself and mate mapped 1622 + 0 singletons (0.08% : N/A) 58 + 0 with mate mapped to a different chr 43 + 0 with mate mapped to a different chr (mapQ>=5)