## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates --INPUT SRR7062655.bam --OUTPUT SRR7062655.md.bam --METRICS_FILE SRR7062655.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Nov 07 11:08:35 CET 2023

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062655	1622	958977	721	1622	330	43233	0	0.045216	10313700

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	874337	874337
2.0	1.911211	39701	39701
3.0	2.741516	1614	1614
4.0	3.4981	75	75
5.0	4.187506	11	11
6.0	4.815702	3	3
7.0	5.38812	1	1
8.0	5.909714	2	2
9.0	6.384996	0	0
10.0	6.818078	0	0
11.0	7.212707	0	0
12.0	7.572297	0	0
13.0	7.89996	0	0
14.0	8.19853	0	0
15.0	8.47059	0	0
16.0	8.718494	0	0
17.0	8.944387	0	0
18.0	9.150223	0	0
19.0	9.337783	0	0
20.0	9.50869	0	0
21.0	9.664422	0	0
22.0	9.806327	0	0
23.0	9.935632	0	0
24.0	10.053456	0	0
25.0	10.160819	0	0
26.0	10.258649	0	0
27.0	10.347793	0	0
28.0	10.429022	0	0
29.0	10.503039	0	0
30.0	10.570483	0	0
31.0	10.63194	0	0
32.0	10.68794	0	0
33.0	10.738967	0	0
34.0	10.785464	0	0
35.0	10.827833	0	0
36.0	10.866439	0	0
37.0	10.901618	0	0
38.0	10.933673	0	0
39.0	10.962882	0	0
40.0	10.989498	0	0
41.0	11.013751	0	0
42.0	11.03585	0	0
43.0	11.055987	0	0
44.0	11.074336	0	0
45.0	11.091056	0	0
46.0	11.106291	0	0
47.0	11.120174	0	0
48.0	11.132823	0	0
49.0	11.14435	0	0
50.0	11.154854	0	0
51.0	11.164424	0	0
52.0	11.173145	0	0
53.0	11.181092	0	0
54.0	11.188333	0	0
55.0	11.194931	0	0
56.0	11.200943	0	0
57.0	11.206422	0	0
58.0	11.211414	0	0
59.0	11.215963	0	0
60.0	11.220108	0	0
61.0	11.223885	0	0
62.0	11.227326	0	0
63.0	11.230462	0	0
64.0	11.23332	0	0
65.0	11.235923	0	0
66.0	11.238296	0	0
67.0	11.240458	0	0
68.0	11.242428	0	0
69.0	11.244223	0	0
70.0	11.245859	0	0
71.0	11.247349	0	0
72.0	11.248707	0	0
73.0	11.249945	0	0
74.0	11.251073	0	0
75.0	11.2521	0	0
76.0	11.253036	0	0
77.0	11.25389	0	0
78.0	11.254667	0	0
79.0	11.255375	0	0
80.0	11.256021	0	0
81.0	11.256609	0	0
82.0	11.257145	0	0
83.0	11.257633	0	0
84.0	11.258078	0	0
85.0	11.258484	0	0
86.0	11.258853	0	0
87.0	11.25919	0	0
88.0	11.259497	0	0
89.0	11.259777	0	0
90.0	11.260031	0	0
91.0	11.260263	0	0
92.0	11.260475	0	0
93.0	11.260668	0	0
94.0	11.260843	0	0
95.0	11.261003	0	0
96.0	11.261149	0	0
97.0	11.261282	0	0
98.0	11.261403	0	0
99.0	11.261513	0	0
100.0	11.261614	0	0