{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "Galaxy-Workflow-miRNA-WF2-Mirdeep2 (imported from uploaded file) (imported from uploaded file)", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [], 
            "name": "* Mapper : Process and map reads to the genome.", 
            "outputs": [
                {
                    "name": "output_arf", 
                    "type": "arf"
                }, 
                {
                    "name": "output_fa", 
                    "type": "fasta"
                }
            ], 
            "position": {
                "left": 209, 
                "top": 258.5
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "sm_mapper", 
            "tool_state": "{\"__page__\": 0, \"input_fasta\": \"null\", \"input_ref_genome\": \"\\\"/usr/local/bioinfo/src/galaxy/galaxy-dist/tools/sm_mirdeep2/bank/Homo_sapiens_AllChr\\\"\", \"collapse\": \"\\\"YES\\\"\", \"queries\": \"[]\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {
                "input_arf": {
                    "id": 0, 
                    "output_name": "output_arf"
                }, 
                "input_fasta": {
                    "id": 0, 
                    "output_name": "output_fa"
                }
            }, 
            "inputs": [], 
            "name": "* miRDeep2core - Prediction des miRNAs", 
            "outputs": [
                {
                    "name": "output_html", 
                    "type": "html"
                }, 
                {
                    "name": "output_csv", 
                    "type": "csv"
                }, 
                {
                    "name": "output_bed", 
                    "type": "bed"
                }
            ], 
            "position": {
                "left": 636.5, 
                "top": 231.5
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "sm_mirdeep2core_without_Randfold", 
            "tool_state": "{\"__page__\": 0, \"input_arf\": \"null\", \"input_genome_ref\": \"\\\"/usr/local/bioinfo/src/galaxy/galaxy-dist/tools/sm_mirdeep2/bank/Drosophila_melanogaster_AllChr\\\"\", \"input_fasta\": \"null\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}