Left reads: Input : 1624613 Mapped : 1541252 (94.9% of input) of these: 33875 ( 2.2%) have multiple alignments (1 have >20) Right reads: Input : 1624613 Mapped : 1527880 (94.0% of input) of these: 33508 ( 2.2%) have multiple alignments (1 have >20) 94.5% overall read mapping rate. Aligned pairs: 1445687 of these: 31916 ( 2.2%) have multiple alignments 1720 ( 0.1%) are discordant alignments 88.9% concordant pair alignment rate.