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                                    ---  PhyML v3.0  ---                                             
                            http://www.atgc-montpellier.fr/phyml                                          
                         Copyright CNRS - Universite Montpellier II                                 
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. Sequence filename: 			prot_nt.concat.phy

. Data set: 				#1

. Tree topology search : 		NNIs

. Initial tree: 			BioNJ

. Model of nucleotides substitution: 	GTR

. Number of taxa: 			66

. Log-likelihood: 			-239939.96620

. Unconstrained likelihood: 		-75443.33412

. Parsimony: 				57324

. Tree size: 				7.74460

. Discrete gamma model: 		Yes
  - Number of categories: 		4
  - Gamma shape parameter: 		1.123

. Proportion of invariant: 		0.330

. Nucleotides frequencies:

  - f(A)= 0.30036
  - f(C)= 0.28638
  - f(G)= 0.12708
  - f(T)= 0.28618

. GTR relative rate parameters : 

  A <-> C    1.62354
  A <-> G   11.82400
  A <-> T    1.28664
  C <-> G    0.46467
  C <-> T   13.62516
  G <-> T    1.00000


. Instantaneous rate matrix : 

  [A---------C---------G---------T------]
  -0.62403   0.12422   0.40143   0.09837  
   0.13028  -1.18779   0.01578   1.04173  
   0.94881   0.03555  -1.06082   0.07646  
   0.10325   1.04247   0.03395  -1.17967  

. aLRT statistics to test branches

. Time used 0h33m51s


. 2031 seconds

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 Suggested citation:
 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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