Discrepancy Report Results Summary DISC_SOURCE_QUALS_ASNDISC:strain (all present, all unique) DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all unique) DISC_FEATURE_COUNT:gene: 831 present DISC_FEATURE_COUNT:CDS: 793 present DISC_FEATURE_COUNT:tRNA: 34 present DISC_FEATURE_COUNT:rRNA: 3 present DISC_FEATURE_COUNT:tmRNA: 1 present DISC_COUNT_NUCLEOTIDES:1 nucleotide Bioseqs are present OVERLAPPING_GENES:163 genes overlap another gene on the same strand. OVERLAPPING_CDS:7 coding regions overlap another coding region with a similar or identical name. RNA_CDS_OVERLAP:2 coding regions overlap RNA features SUSPECT_PRODUCT_NAMES:2 product_names contain suspect phrase or characters May contain database identifier more appropriate in note; remove from product name 2 features Contains underscore DISC_SUSPICIOUS_NOTE_TEXT:6 note texts contain suspicious phrases DISC_QUALITY_SCORES:Quality scores are missing on all sequences. FATAL: DISC_SUSPECT_RRNA_PRODUCTS:1 rRNA product names contain suspect phrase ONCALLER_COMMENT_PRESENT:1 comment descriptors were found (all same) SHORT_PROT_SEQUENCES:72 protein sequences are shorter than 50 aa. MISSING_GENOMEASSEMBLY_COMMENTS:1 bioseqs are missing GenomeAssembly structured comments FIND_OVERLAPPED_GENES:1 genes completely overlapped by other genes MOLTYPE_NOT_MRNA:1 molecule types are not set as mRNA. TECHNIQUE_NOT_TSA:1 technique are not set as TSA MISSING_STRUCTURED_COMMENT:1 sequences do not include structured comments. MISSING_PROJECT:794 sequences do not include project. FATAL: RRNA_NAME_CONFLICTS:1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA" DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) Detailed Report DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all unique) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for strain DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all unique) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for taxname DiscRep_ALL:DISC_FEATURE_COUNT::gene: 831 present DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 793 present DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 34 present DiscRep_ALL:DISC_FEATURE_COUNT::rRNA: 3 present DiscRep_ALL:DISC_FEATURE_COUNT::tmRNA: 1 present DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::1 nucleotide Bioseqs are present /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) DiscRep_ALL:OVERLAPPING_GENES::163 genes overlap another gene on the same strand. /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ssrA wCam_contig000001:645-974 wCam_00001 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00002 wCam_contig000001:782-883 wCam_00002 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00003 wCam_contig000001:972-1409 wCam_00003 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplS wCam_contig000001:c6621-6247 wCam_00007 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene trmD wCam_contig000001:c7312-6605 wCam_00008 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00024 wCam_contig000001:c21954-21469 wCam_00024 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00025 wCam_contig000001:c22184-21921 wCam_00025 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00032 wCam_contig000001:c31386-30073 wCam_00032 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00033 wCam_contig000001:c32713-31373 wCam_00033 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene lspA wCam_contig000001:c33230-32766 wCam_00034 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ribF_1 wCam_contig000001:c33700-33227 wCam_00035 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00046 wCam_contig000001:c48593-47823 wCam_00046 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene psd wCam_contig000001:c49282-48590 wCam_00047 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00054 wCam_contig000001:c63910-63005 wCam_00054 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00055 wCam_contig000001:c64634-63903 wCam_00055 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene acpP wCam_contig000001:64786-65058 wCam_00056 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene fabF wCam_contig000001:65055-66320 wCam_00057 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene engB wCam_contig000001:103962-104543 wCam_00082 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene argB wCam_contig000001:104518-105456 wCam_00083 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene dut wCam_contig000001:105526-105990 wCam_00084 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00085 wCam_contig000001:105959-106096 wCam_00085 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00091 wCam_contig000001:c114392-113613 wCam_00091 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pgpA wCam_contig000001:c114864-114382 wCam_00092 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene efp wCam_contig000001:121702-122268 wCam_00098 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene suhB wCam_contig000001:122237-122974 wCam_00099 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene gph wCam_contig000001:129592-130248 wCam_00104 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00105 wCam_contig000001:130248-130742 wCam_00105 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene mnmA wCam_contig000001:138982-140094 wCam_00112 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00113 wCam_contig000001:140051-140224 wCam_00113 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rnhA wCam_contig000001:144084-144521 wCam_00117 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00118 wCam_contig000001:144514-147564 wCam_00118 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene tatC wCam_contig000001:c148458-147691 wCam_00119 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene gapB wCam_contig000001:c149441-148455 wCam_00120 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene xthA wCam_contig000001:c208743-207964 wCam_00159 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00160 wCam_contig000001:c209456-208743 wCam_00160 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00172 wCam_contig000001:c223209-222991 wCam_00172 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00173 wCam_contig000001:c223460-223197 wCam_00173 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00174 wCam_contig000001:c223702-223457 wCam_00174 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene znuC wCam_contig000001:225445-226185 wCam_00177 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ubiB wCam_contig000001:226182-227612 wCam_00178 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene hemC wCam_contig000001:231197-232075 wCam_00181 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene murB wCam_contig000001:232066-232953 wCam_00182 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ispG wCam_contig000001:236067-236165 wCam_00186 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00187 wCam_contig000001:236134-236301 wCam_00187 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene petB wCam_contig000001:248263-249495 wCam_00197 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene petC wCam_contig000001:249495-250259 wCam_00198 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene dhfR wCam_contig000001:c253562-253083 wCam_00201 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene folP1 wCam_contig000001:c254857-253559 wCam_00202 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene folB wCam_contig000001:c255261-254857 wCam_00203 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pleD_2 wCam_contig000001:c261261-260854 wCam_00208 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00209 wCam_contig000001:c261532-261233 wCam_00209 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene lipA wCam_contig000001:c269934-269062 wCam_00212 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpmB wCam_contig000001:c270271-269927 wCam_00213 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene yidC wCam_contig000001:282309-284027 wCam_00223 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ribH1 wCam_contig000001:284008-284196 wCam_00224 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ribH wCam_contig000001:284283-284435 wCam_00225 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00226 wCam_contig000001:284435-284917 wCam_00226 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene infA wCam_contig000001:285032-285295 wCam_00227 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene yhdE wCam_contig000001:285273-285869 wCam_00228 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00232 wCam_contig000001:c292596-291604 wCam_00232 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00233 wCam_contig000001:c294086-292593 wCam_00233 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene virB9_1 wCam_contig000001:c294903-294103 wCam_00234 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ptlE wCam_contig000001:c295579-294896 wCam_00235 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nfuA wCam_contig000001:309210-309794 wCam_00243 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene hisS wCam_contig000001:309791-311032 wCam_00244 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00245 wCam_contig000001:c311546-311049 wCam_00245 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpoH wCam_contig000001:c312432-311539 wCam_00246 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00264 wCam_contig000001:327538-327666 wCam_00264 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00265 wCam_contig000001:327635-327823 wCam_00265 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rppH wCam_contig000001:327816-328301 wCam_00266 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene fabH wCam_contig000001:c352228-351248 wCam_00291 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene plsX wCam_contig000001:c353270-352221 wCam_00292 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ccmE wCam_contig000001:c355375-354989 wCam_00294 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00295 wCam_contig000001:c355496-355359 wCam_00295 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene birA wCam_contig000001:c356284-355493 wCam_00296 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nuoN wCam_contig000001:c357680-356286 wCam_00297 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nuoM wCam_contig000001:c359086-357677 wCam_00298 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nuoK wCam_contig000001:c361292-360984 wCam_00300 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nuoJ wCam_contig000001:c361897-361283 wCam_00301 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene atpA wCam_contig000001:c410447-408906 wCam_00330 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene atpH wCam_contig000001:c411003-410437 wCam_00331 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00339 wCam_contig000001:421178-421300 wCam_00339 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rluC wCam_contig000001:421284-422231 wCam_00340 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pstB wCam_contig000001:c426540-425725 wCam_00344 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene dapB wCam_contig000001:c427274-426480 wCam_00345 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00352 wCam_contig000001:436199-436519 wCam_00352 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pyrG wCam_contig000001:436519-438153 wCam_00353 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene metC wCam_contig000001:c443419-442157 wCam_00357 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene bolA wCam_contig000001:c443648-443364 wCam_00358 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsR wCam_contig000001:c465048-464773 wCam_00377 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsF wCam_contig000001:c465824-465048 wCam_00378 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00396 wCam_contig000001:c485460-485335 wCam_00396 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00397 wCam_contig000001:c485620-485450 wCam_00397 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00431 wCam_contig000001:c535132-534962 wCam_00431 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00432 wCam_contig000001:c536051-535110 wCam_00432 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene cdsA wCam_contig000001:c537699-537052 wCam_00436 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ispU wCam_contig000001:c538363-537668 wCam_00437 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene tsf wCam_contig000001:c540911-540036 wCam_00441 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsB wCam_contig000001:c541740-540892 wCam_00442 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00448 wCam_contig000001:c553319-552099 wCam_00448 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00449 wCam_contig000001:c554047-553316 wCam_00449 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene lolE wCam_contig000001:c555269-554040 wCam_00450 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00452 wCam_contig000001:c558094-557729 wCam_00452 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene sdhC wCam_contig000001:c558468-558091 wCam_00453 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsK wCam_contig000001:c567953-567492 wCam_00463 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsM wCam_contig000001:c568269-567901 wCam_00464 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene adk wCam_contig000001:c568982-568329 wCam_00465 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene secY wCam_contig000001:c570307-568979 wCam_00466 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplX wCam_contig000001:c573850-573533 wCam_00474 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplN wCam_contig000001:c574209-573850 wCam_00475 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplW wCam_contig000001:c577502-577215 wCam_00483 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplD wCam_contig000001:c578113-577499 wCam_00484 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplC wCam_contig000001:c578841-578116 wCam_00485 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rpsJ wCam_contig000001:c579194-578838 wCam_00486 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00495 wCam_contig000001:c584597-584382 wCam_00495 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00496 wCam_contig000001:c584755-584540 wCam_00496 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene lpd3 wCam_contig000001:c598833-597445 wCam_00509 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene bamB wCam_contig000001:c599935-598826 wCam_00510 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pdxJ_1 wCam_contig000001:600613-600849 wCam_00511 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pdxJ_2 wCam_contig000001:600837-601250 wCam_00512 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00523 wCam_contig000001:c610199-609999 wCam_00523 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00524 wCam_contig000001:c610383-610186 wCam_00524 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nuoH wCam_contig000001:c618894-617869 wCam_00533 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene nqo3 wCam_contig000001:c620929-618878 wCam_00534 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00538 wCam_contig000001:c624807-624022 wCam_00538 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene def wCam_contig000001:c625336-624800 wCam_00539 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00566 wCam_contig000001:655283-655939 wCam_00566 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene cysS wCam_contig000001:655932-657305 wCam_00567 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene uvrC wCam_contig000001:c677465-675813 wCam_00584 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene glyS wCam_contig000001:c679567-677462 wCam_00585 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00589 wCam_contig000001:c684944-684807 wCam_00589 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00590 wCam_contig000001:c685084-684944 wCam_00590 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ygfA wCam_contig000001:c685823-685128 wCam_00591 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pyrK wCam_contig000001:c686436-685807 wCam_00592 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene virB4_1 wCam_contig000001:707261-709666 wCam_00608 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00609 wCam_contig000001:709659-712208 wCam_00609 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00610 wCam_contig000001:712208-714646 wCam_00610 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00611 wCam_contig000001:714646-717612 wCam_00611 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene secE wCam_contig000001:736078-736278 wCam_00629 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00630 wCam_contig000001:736268-737098 wCam_00630 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene cspA wCam_contig000001:c751939-751685 wCam_00638 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00639 wCam_contig000001:c752052-751921 wCam_00639 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene mrpB wCam_contig000001:759593-760021 wCam_00649 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene mrpC wCam_contig000001:760008-760334 wCam_00650 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene pth wCam_contig000001:c769117-768569 wCam_00655 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene rplY wCam_contig000001:c769728-769117 wCam_00656 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00689 wCam_contig000001:811075-811272 wCam_00689 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00690 wCam_contig000001:811250-811426 wCam_00690 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene iscU wCam_contig000001:851203-851595 wCam_00734 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene iscA wCam_contig000001:851558-852007 wCam_00735 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00736 wCam_contig000001:851964-852458 wCam_00736 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene hscA wCam_contig000001:852436-854211 wCam_00737 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene proS wCam_contig000001:867215-868492 wCam_00749 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene acpS wCam_contig000001:868489-868866 wCam_00750 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene ffh wCam_contig000001:c901801-900458 wCam_00780 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene hyfB wCam_contig000001:c903333-901786 wCam_00781 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene era wCam_contig000001:931097-931981 wCam_00804 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00805 wCam_contig000001:931974-932798 wCam_00805 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00806 wCam_contig000001:932773-932934 wCam_00806 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene prs wCam_contig000001:933257-934291 wCam_00807 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene gatC wCam_contig000001:934281-934634 wCam_00808 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene eno wCam_contig000001:957931-959196 wCam_00830 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene obg wCam_contig000001:959193-960218 wCam_00831 DiscRep_ALL:OVERLAPPING_CDS::7 coding regions overlap another coding region with a similar or identical name. DiscRep_SUB:OVERLAPPING_CDS::7 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS putative zinc protease wCam_contig000001:c31386-30073 wCam_00032 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS putative zinc protease wCam_contig000001:c32713-31373 wCam_00033 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS Pyridoxine 5'-phosphate synthase wCam_contig000001:600613-600849 wCam_00511 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS Pyridoxine 5'-phosphate synthase wCam_contig000001:600837-601250 wCam_00512 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS TrbL/VirB6 plasmid conjugal transfer protein wCam_contig000001:709659-712208 wCam_00609 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS TrbL/VirB6 plasmid conjugal transfer protein wCam_contig000001:712208-714646 wCam_00610 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS TrbL/VirB6 plasmid conjugal transfer protein wCam_contig000001:714646-717612 wCam_00611 DiscRep_ALL:RNA_CDS_OVERLAP::2 coding regions overlap RNA features FATAL: DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions are completely contained in RNAs /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:782-883 wCam_00002 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:tmRNA transfer-messenger RNA, SsrA wCam_contig000001:645-974 wCam_00001 DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs (no containment) DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs on the same strand (no containment) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS Stringent starvation protein B wCam_contig000001:972-1409 wCam_00003 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:tmRNA transfer-messenger RNA, SsrA wCam_contig000001:645-974 wCam_00001 DiscRep_ALL:SUSPECT_PRODUCT_NAMES::2 product_names contain suspect phrase or characters DiscRep_SUB:SUSPECT_PRODUCT_NAMES::May contain database identifier more appropriate in note; remove from product name DiscRep_SUB:SUSPECT_PRODUCT_NAMES::2 features Contains underscore /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS Putative O-methyltransferase/MSMEI_4947 wCam_contig000001:c317227-316577 wCam_00251 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS Aspartate kinase Ask_LysC wCam_contig000001:322350-323513 wCam_00259 DiscRep_ALL:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain suspicious phrases DiscRep_SUB:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain 'homolog' /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:c151620-149800 wCam_00121 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:284435-284917 wCam_00226 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:315922-316575 wCam_00250 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:481362-481976 wCam_00391 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:834447-834920 wCam_00712 /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS hypothetical protein wCam_contig000001:851964-852458 wCam_00736 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. FATAL: DiscRep_ALL:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contain suspect phrase FATAL: DiscRep_SUB:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contains 'partial' /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:rRNA 5S ribosomal RNA (partial) wCam_contig000001:c668930-668841 wCam_00579 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::1 comment descriptors were found (all same) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001:Annotated using prokka 1.10 from http://www.vicbioinformatics.com DiscRep_ALL:SHORT_PROT_SEQUENCES::72 protein sequences are shorter than 50 aa. /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00002 (length 33) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00017 (length 38) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00020 (length 38) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00021 (length 30) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00049 (length 42) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00066 (length 35) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00074 (length 39) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00085 (length 45) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00102 (length 39) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00139 (length 45) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00143 (length 37) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00165 (length 49) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00166 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00183 (length 48) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00186 (length 32) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00221 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00239 (length 31) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00256 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00257 (length 48) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00261 (length 36) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00264 (length 42) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00287 (length 45) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00293 (length 49) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00295 (length 45) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00333 (length 36) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00339 (length 40) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00360 (length 34) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00362 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00363 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00396 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00422 (length 31) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00427 (length 44) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00428 (length 33) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00430 (length 42) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00497 (length 34) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00501 (length 32) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00508 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00536 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00545 (length 35) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00546 (length 40) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00552 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00569 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00589 (length 45) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00590 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00595 (length 31) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00615 (length 48) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00616 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00639 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00653 (length 48) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00664 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00667 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00686 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00688 (length 30) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00702 (length 30) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00705 (length 38) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00706 (length 41) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00707 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00718 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00732 (length 43) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00740 (length 36) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00741 (length 48) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00744 (length 29) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00754 (length 31) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00766 (length 42) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00768 (length 29) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00776 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00799 (length 40) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00803 (length 37) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00811 (length 29) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00812 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00816 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00817 (length 42) DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::1 bioseqs are missing GenomeAssembly structured comments /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) DiscRep_ALL:FIND_OVERLAPPED_GENES::1 genes completely overlapped by other genes /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene wCam_00002 wCam_contig000001:782-883 wCam_00002 DiscRep_ALL:MOLTYPE_NOT_MRNA::1 molecule types are not set as mRNA. /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) DiscRep_ALL:TECHNIQUE_NOT_TSA::1 technique are not set as TSA /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) DiscRep_ALL:MISSING_STRUCTURED_COMMENT::1 sequences do not include structured comments. /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) DiscRep_ALL:MISSING_PROJECT::794 sequences do not include project. /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00002 (length 33) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00003 (length 145) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00004 (length 205) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00005 (length 265) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00006 (length 416) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00007 (length 124) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00008 (length 235) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00009 (length 135) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00010 (length 110) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00011 (length 345) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00012 (length 97) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00013 (length 119) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00014 (length 247) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00015 (length 336) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00016 (length 397) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00017 (length 38) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00018 (length 406) 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/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00799 (length 40) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00800 (length 276) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00801 (length 194) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00802 (length 166) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00803 (length 37) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00804 (length 294) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00805 (length 274) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00806 (length 53) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00807 (length 344) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00808 (length 117) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00809 (length 408) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00810 (length 269) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00811 (length 29) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00812 (length 47) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00813 (length 298) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00815 (length 74) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00816 (length 46) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00817 (length 42) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00818 (length 298) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00819 (length 343) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00820 (length 81) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00821 (length 264) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00822 (length 70) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00823 (length 325) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00824 (length 501) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00825 (length 324) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00826 (length 64) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00827 (length 53) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00828 (length 224) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00829 (length 487) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00830 (length 421) /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00831 (length 341) FATAL: DiscRep_ALL:RRNA_NAME_CONFLICTS::1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA" /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:rRNA 5S ribosomal RNA (partial) wCam_contig000001:c668930-668841 wCam_00579 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::1 Molinfos are missing field technique /home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)