Discrepancy Report Results

Summary
DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
DISC_FEATURE_COUNT:gene: 793 present
DISC_FEATURE_COUNT:CDS: 755 present
DISC_FEATURE_COUNT:tRNA: 34 present
DISC_FEATURE_COUNT:rRNA: 3 present
DISC_FEATURE_COUNT:tmRNA: 1 present
DISC_COUNT_NUCLEOTIDES:2 nucleotide Bioseqs are present
OVERLAPPING_GENES:156 genes overlap another gene on the same strand.
OVERLAPPING_CDS:8 coding regions overlap another coding region with a similar or identical name.
SUSPECT_PRODUCT_NAMES:2 product_names contain suspect phrase or characters
	May contain database identifier more appropriate in note; remove from product name
		2 features Contains underscore
DISC_SUSPICIOUS_NOTE_TEXT:6 note texts contain suspicious phrases
NO_ANNOTATION:1 bioseqs have no features
DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
FATAL: DISC_SUSPECT_RRNA_PRODUCTS:1 rRNA product names contain suspect phrase
FATAL: DISC_SHORT_RRNA:1 rRNA features are too short
ONCALLER_COMMENT_PRESENT:2 comment descriptors were found (all same)
SHORT_PROT_SEQUENCES:49 protein sequences are shorter than 50 aa.
MISSING_GENOMEASSEMBLY_COMMENTS:2 bioseqs are missing GenomeAssembly structured comments
MOLTYPE_NOT_MRNA:2 molecule types are not set as mRNA.
TECHNIQUE_NOT_TSA:2 technique are not set as TSA
MISSING_STRUCTURED_COMMENT:2 sequences do not include structured comments.
MISSING_PROJECT:757 sequences do not include project.
FATAL: RRNA_NAME_CONFLICTS:1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
DISC_GAPS:1 sequences contain gaps


Detailed Report

DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::2 sources have 'wDimm' for strain
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::2 sources have 'Genus wolbachia endosymbiont' for taxname
DiscRep_ALL:DISC_FEATURE_COUNT::gene: 793 present
DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 755 present
DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 34 present
DiscRep_ALL:DISC_FEATURE_COUNT::rRNA: 3 present
DiscRep_ALL:DISC_FEATURE_COUNT::tmRNA: 1 present
DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::2 nucleotide Bioseqs are present
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:OVERLAPPING_GENES::156 genes overlap another gene on the same strand.
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	trmD	wDimm_contig000001:6148-6855	wDimm_00007
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplS	wDimm_contig000001:6839-7216	wDimm_00008
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pstA	wDimm_contig000001:7327-8583	wDimm_00009
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	purL_1	wDimm_contig000001:8580-9377	wDimm_00010
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	obg	wDimm_contig000001:c13869-12847	wDimm_00014
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	eno	wDimm_contig000001:c15131-13857	wDimm_00015
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	gatC	wDimm_contig000001:c36468-36115	wDimm_00034
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	prs	wDimm_contig000001:c37384-36458	wDimm_00035
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00036	wDimm_contig000001:c39037-38210	wDimm_00036
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	era	wDimm_contig000001:c39911-39027	wDimm_00037
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	hyfB	wDimm_contig000001:64408-65955	wDimm_00059
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ffh	wDimm_contig000001:65940-67283	wDimm_00060
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ispH_1	wDimm_contig000001:70930-71460	wDimm_00065
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ispH_2	wDimm_contig000001:71417-71755	wDimm_00066
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	hscA	wDimm_contig000001:c113812-112025	wDimm_00101
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00102	wDimm_contig000001:c114284-113790	wDimm_00102
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	iscA	wDimm_contig000001:c114645-114241	wDimm_00103
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00110	wDimm_contig000001:121559-121795	wDimm_00110
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00111	wDimm_contig000001:121734-121967	wDimm_00111
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00115	wDimm_contig000001:c128452-125606	wDimm_00115
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	virB4_1	wDimm_contig000001:c130793-128433	wDimm_00116
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00120	wDimm_contig000001:c135139-133865	wDimm_00120
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	sodB	wDimm_contig000001:c135740-135108	wDimm_00121
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00124	wDimm_contig000001:139006-139167	wDimm_00124
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	tsaB	wDimm_contig000001:139167-139766	wDimm_00125
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00157	wDimm_contig000001:177109-177330	wDimm_00157
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	mutM	wDimm_contig000001:177276-178163	wDimm_00158
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	lgt	wDimm_contig000001:c185391-184603	wDimm_00163
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	smpB	wDimm_contig000001:c185846-185382	wDimm_00164
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplY	wDimm_contig000001:192850-193461	wDimm_00169
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pth	wDimm_contig000001:193461-194012	wDimm_00170
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	murJ	wDimm_contig000001:195101-196588	wDimm_00172
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00173	wDimm_contig000001:196585-199137	wDimm_00173
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00194	wDimm_contig000001:c225494-224664	wDimm_00194
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	secE	wDimm_contig000001:c225684-225484	wDimm_00195
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	fusA	wDimm_contig000001:c229038-226954	wDimm_00197
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsG	wDimm_contig000001:c229517-229038	wDimm_00198
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nuoJ	wDimm_contig000001:274382-274969	wDimm_00232
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nuoK	wDimm_contig000001:274960-275268	wDimm_00233
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ndhD1	wDimm_contig000001:277166-278569	wDimm_00235
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nuoN	wDimm_contig000001:278566-279960	wDimm_00236
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	birA	wDimm_contig000001:279962-280753	wDimm_00237
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00238	wDimm_contig000001:280750-280887	wDimm_00238
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ccmE	wDimm_contig000001:280868-281257	wDimm_00239
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpmF	wDimm_contig000001:282797-282979	wDimm_00240
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	plsX	wDimm_contig000001:282930-284027	wDimm_00241
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	fabH	wDimm_contig000001:284020-285003	wDimm_00242
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	fgs	wDimm_contig000001:c316867-315566	wDimm_00273
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00274	wDimm_contig000001:c317454-316864	wDimm_00274
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpoH	wDimm_contig000001:324259-325152	wDimm_00283
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00284	wDimm_contig000001:325145-325642	wDimm_00284
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	hisS	wDimm_contig000001:c326900-325659	wDimm_00285
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nfuA	wDimm_contig000001:c327481-326897	wDimm_00286
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	virB8	wDimm_contig000001:344361-345044	wDimm_00296
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	virB9_2	wDimm_contig000001:345031-345837	wDimm_00297
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	yhdE	wDimm_contig000001:c355072-354476	wDimm_00304
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	infA	wDimm_contig000001:c355313-355050	wDimm_00305
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00306	wDimm_contig000001:c355911-355435	wDimm_00306
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ribH1	wDimm_contig000001:c356339-355911	wDimm_00307
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	yidC	wDimm_contig000001:c358035-356317	wDimm_00308
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpmB	wDimm_contig000001:369115-369429	wDimm_00319
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	lipA	wDimm_contig000001:369422-370294	wDimm_00320
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00323	wDimm_contig000001:377819-378115	wDimm_00323
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pleD	wDimm_contig000001:378087-379463	wDimm_00324
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00337	wDimm_contig000001:393550-393720	wDimm_00337
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	xerD_1	wDimm_contig000001:393710-394696	wDimm_00338
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsF	wDimm_contig000001:412666-413442	wDimm_00356
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsR	wDimm_contig000001:413442-413717	wDimm_00357
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pyrG	wDimm_contig000001:c439091-437454	wDimm_00378
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00379	wDimm_contig000001:c439411-439091	wDimm_00379
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	dapB	wDimm_contig000001:447137-447931	wDimm_00385
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pstB	wDimm_contig000001:447871-448686	wDimm_00386
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	atpH	wDimm_contig000001:461674-462234	wDimm_00399
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	atpA	wDimm_contig000001:462231-463772	wDimm_00400
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rnhA	wDimm_contig000001:473382-473819	wDimm_00411
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00412	wDimm_contig000001:473812-476877	wDimm_00412
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	tatC	wDimm_contig000001:c477660-476896	wDimm_00413
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	gapB	wDimm_contig000001:c478643-477657	wDimm_00414
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	dcd	wDimm_contig000001:c505344-504787	wDimm_00431
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00432	wDimm_contig000001:c505507-505325	wDimm_00432
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	groL5_1	wDimm_contig000001:517496-518134	wDimm_00442
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	groL5_2	wDimm_contig000001:518131-519147	wDimm_00443
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	xthA	wDimm_contig000001:c532534-531755	wDimm_00454
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00455	wDimm_contig000001:c533343-532534	wDimm_00455
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	znuC	wDimm_contig000001:549022-549762	wDimm_00471
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ubiB	wDimm_contig000001:549759-551189	wDimm_00472
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	hemC	wDimm_contig000001:554589-555467	wDimm_00475
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	murB	wDimm_contig000001:555458-556345	wDimm_00476
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	petB	wDimm_contig000001:571489-572721	wDimm_00492
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	petC	wDimm_contig000001:572721-573485	wDimm_00493
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	dhfR	wDimm_contig000001:c576777-576298	wDimm_00496
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	folP1	wDimm_contig000001:c578072-576774	wDimm_00497
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	folB	wDimm_contig000001:c578473-578072	wDimm_00498
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	cdsA	wDimm_contig000001:c617791-617165	wDimm_00528
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ispU	wDimm_contig000001:c618476-617781	wDimm_00529
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	tsf	wDimm_contig000001:c620948-620079	wDimm_00532
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsB	wDimm_contig000001:c621804-620929	wDimm_00533
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00542	wDimm_contig000001:c635810-635445	wDimm_00542
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	sdhC	wDimm_contig000001:c636184-635807	wDimm_00543
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	adk	wDimm_contig000001:c646606-645956	wDimm_00554
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	secY	wDimm_contig000001:c647931-646603	wDimm_00555
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplR	wDimm_contig000001:c649315-648935	wDimm_00558
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplF	wDimm_contig000001:c649860-649315	wDimm_00559
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplX	wDimm_contig000001:c651476-651159	wDimm_00563
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplN	wDimm_contig000001:c651835-651476	wDimm_00564
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsQ	wDimm_contig000001:c652078-651845	wDimm_00565
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpmC	wDimm_contig000001:c652274-652071	wDimm_00566
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplW	wDimm_contig000001:c655126-654839	wDimm_00572
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplD	wDimm_contig000001:c655737-655123	wDimm_00573
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rplC	wDimm_contig000001:c656465-655740	wDimm_00574
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	rpsJ	wDimm_contig000001:c656830-656462	wDimm_00575
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	tsaA	wDimm_contig000001:670633-671232	wDimm_00590
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	trxB	wDimm_contig000001:671229-672188	wDimm_00591
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	xerD_2	wDimm_contig000001:c674040-673114	wDimm_00592
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	lpd3	wDimm_contig000001:c675425-674037	wDimm_00593
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	bamB	wDimm_contig000001:c676527-675412	wDimm_00594
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	coaE_1	wDimm_contig000001:691807-691986	wDimm_00613
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	coaE_2	wDimm_contig000001:691946-692395	wDimm_00614
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nuoH	wDimm_contig000001:c695359-694334	wDimm_00617
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	nqo3	wDimm_contig000001:c697391-695343	wDimm_00618
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00621	wDimm_contig000001:c701286-700498	wDimm_00621
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	def	wDimm_contig000001:c701815-701279	wDimm_00622
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00639	wDimm_contig000001:720708-721088	wDimm_00639
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00640	wDimm_contig000001:721081-721365	wDimm_00640
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00649	wDimm_contig000001:730532-731191	wDimm_00649
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	cysS	wDimm_contig000001:731184-732557	wDimm_00650
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	uvrC	wDimm_contig000001:c751318-749663	wDimm_00665
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	glyS	wDimm_contig000001:c753420-751315	wDimm_00666
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ygfA	wDimm_contig000001:c759606-759073	wDimm_00671
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pyrK	wDimm_contig000001:c760219-759590	wDimm_00672
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	virB4_2	wDimm_contig000001:778280-780685	wDimm_00687
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00688	wDimm_contig000001:780678-783224	wDimm_00688
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00689	wDimm_contig000001:783266-785671	wDimm_00689
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00690	wDimm_contig000001:785668-788616	wDimm_00690
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00691	wDimm_contig000001:788770-792027	wDimm_00691
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00692	wDimm_contig000001:792017-792655	wDimm_00692
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00694	wDimm_contig000001:c794097-793801	wDimm_00694
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00695	wDimm_contig000001:c794261-794067	wDimm_00695
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00698	wDimm_contig000001:797135-798184	wDimm_00698
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ccmH	wDimm_contig000001:798168-798545	wDimm_00699
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00708	wDimm_contig000001:c809207-808713	wDimm_00708
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	gph	wDimm_contig000001:c809842-809207	wDimm_00709
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pgpA	wDimm_contig000001:825923-826405	wDimm_00720
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00721	wDimm_contig000001:826395-827174	wDimm_00721
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	argB	wDimm_contig000001:c835194-834256	wDimm_00729
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	engB	wDimm_contig000001:c835750-835169	wDimm_00730
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00738	wDimm_contig000001:c855184-855071	wDimm_00738
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	pyrC	wDimm_contig000001:c856512-855181	wDimm_00739
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	fabF	wDimm_contig000001:c873452-872187	wDimm_00755
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	acpP	wDimm_contig000001:c873721-873449	wDimm_00756
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	psd	wDimm_contig000001:888086-888778	wDimm_00768
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00769	wDimm_contig000001:888775-889545	wDimm_00769
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	ribF	wDimm_contig000001:901832-902767	wDimm_00779
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	lspA	wDimm_contig000001:902764-903243	wDimm_00780
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00781	wDimm_contig000001:903283-904623	wDimm_00781
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Gene	wDimm_00782	wDimm_contig000001:904610-905920	wDimm_00782

DiscRep_ALL:OVERLAPPING_CDS::8 coding regions overlap another coding region with a similar or identical name.
DiscRep_SUB:OVERLAPPING_CDS::8 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	wDimm_contig000001:70930-71460	wDimm_00065
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	wDimm_contig000001:71417-71755	wDimm_00066
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	60 kDa chaperonin 5	wDimm_contig000001:517496-518134	wDimm_00442
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	60 kDa chaperonin 5	wDimm_contig000001:518131-519147	wDimm_00443
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	Dephospho-CoA kinase	wDimm_contig000001:691807-691986	wDimm_00613
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	Dephospho-CoA kinase	wDimm_contig000001:691946-692395	wDimm_00614
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wDimm_contig000001:783266-785671	wDimm_00689
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wDimm_contig000001:785668-788616	wDimm_00690

DiscRep_ALL:SUSPECT_PRODUCT_NAMES::2 product_names contain suspect phrase or characters
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::May contain database identifier more appropriate in note; remove from product name
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::2 features Contains underscore
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	Aspartate kinase Ask_LysC	wDimm_contig000001:c314648-313485	wDimm_00272
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	Putative O-methyltransferase/MSMEI_4947	wDimm_contig000001:319514-320161	wDimm_00278

DiscRep_ALL:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain suspicious phrases
DiscRep_SUB:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain 'homolog'
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c114284-113790	wDimm_00102
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c133631-133158	wDimm_00119
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c320816-320289	wDimm_00279
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c355911-355435	wDimm_00306
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c397830-397213	wDimm_00342
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:CDS	hypothetical protein	wDimm_contig000001:c480761-478929	wDimm_00415

DiscRep_ALL:NO_ANNOTATION::1 bioseqs have no features
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.

FATAL: DiscRep_ALL:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contain suspect phrase
FATAL: DiscRep_SUB:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contains 'partial'
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:rRNA	23S ribosomal RNA (partial)	wDimm_contig000001:c744906-743065	wDimm_00661

FATAL: DiscRep_ALL:DISC_SHORT_RRNA::1 rRNA features are too short
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:rRNA	23S ribosomal RNA (partial)	wDimm_contig000001:c744906-743065	wDimm_00661

DiscRep_ALL:ONCALLER_COMMENT_PRESENT::2 comment descriptors were found (all same)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002:Annotated using prokka 1.10 from http://www.vicbioinformatics.com

DiscRep_ALL:SHORT_PROT_SEQUENCES::49 protein sequences are shorter than 50 aa.
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00018 (length 43)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00028 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00031 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00052 (length 44)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00086 (length 38)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00087 (length 36)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00122 (length 44)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00144 (length 48)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00154 (length 37)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00207 (length 36)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00215 (length 46)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00216 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00217 (length 48)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00228 (length 42)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00238 (length 45)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00275 (length 31)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00303 (length 44)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00311 (length 32)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00312 (length 37)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00325 (length 47)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00372 (length 37)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00395 (length 43)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00396 (length 38)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00419 (length 45)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00430 (length 42)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00452 (length 43)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00461 (length 42)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00469 (length 35)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00477 (length 48)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00485 (length 48)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00486 (length 39)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00515 (length 47)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00517 (length 39)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00520 (length 38)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00523 (length 36)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00538 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00584 (length 32)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00586 (length 39)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00606 (length 30)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00611 (length 38)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00674 (length 36)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00707 (length 35)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00732 (length 43)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00738 (length 37)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00743 (length 45)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00746 (length 48)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00758 (length 39)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00765 (length 49)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00791 (length 44)

DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::2 bioseqs are missing GenomeAssembly structured comments
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:MOLTYPE_NOT_MRNA::2 molecule types are not set as mRNA.
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:TECHNIQUE_NOT_TSA::2 technique are not set as TSA
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:MISSING_STRUCTURED_COMMENT::2 sequences do not include structured comments.
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:MISSING_PROJECT::757 sequences do not include project.
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00001 (length 348)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00002 (length 280)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00003 (length 119)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00004 (length 97)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00005 (length 345)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00006 (length 240)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00007 (length 235)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00008 (length 125)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00009 (length 418)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00010 (length 265)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00011 (length 205)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00012 (length 69)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00014 (length 340)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00015 (length 424)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00016 (length 485)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00017 (length 223)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00018 (length 43)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00019 (length 241)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00020 (length 50)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00021 (length 506)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00022 (length 326)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00023 (length 70)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00024 (length 264)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00025 (length 343)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00026 (length 299)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00027 (length 60)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00028 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00030 (length 298)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00031 (length 34)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00032 (length 269)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00033 (length 408)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00034 (length 117)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00035 (length 308)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00036 (length 275)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00037 (length 294)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00038 (length 606)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00039 (length 138)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00040 (length 194)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00041 (length 276)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00042 (length 222)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00043 (length 198)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00044 (length 326)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00045 (length 706)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00046 (length 369)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00047 (length 245)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00050 (length 550)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00051 (length 57)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00052 (length 44)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00053 (length 90)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00054 (length 374)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_00055 (length 780)
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/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

FATAL: DiscRep_ALL:RRNA_NAME_CONFLICTS::1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:rRNA	23S ribosomal RNA (partial)	wDimm_contig000001:c744906-743065	wDimm_00661

DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::2 Molinfos are missing field technique
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000002 (length 1058)

DiscRep_ALL:DISC_GAPS::1 sequences contain gaps
/home/yquentin/work/wolbachia/prokka/wDimm/wDimm:Prokka:wDimm_contig000001 (length 919954, 1 other, 3444 gap)