Discrepancy Report Results Summary DISC_SOURCE_QUALS_ASNDISC:strain (all present, all unique) DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all unique) DISC_FEATURE_COUNT:gene: 1273 present DISC_FEATURE_COUNT:CDS: 1235 present DISC_FEATURE_COUNT:tRNA: 34 present DISC_FEATURE_COUNT:rRNA: 3 present DISC_FEATURE_COUNT:tmRNA: 1 present DISC_COUNT_NUCLEOTIDES:1 nucleotide Bioseqs are present OVERLAPPING_GENES:363 genes overlap another gene on the same strand. OVERLAPPING_CDS:8 coding regions overlap another coding region with a similar or identical name. RNA_CDS_OVERLAP:1 coding regions overlap RNA features SUSPECT_PRODUCT_NAMES:8 product_names contain suspect phrase or characters Putative Typo 1 features may contain systematic gene product identifiers from phage May contain database identifier more appropriate in note; remove from product name 4 features Contains underscore use protein instead of gene as appropriate 3 features contains 'gene' DISC_SUSPICIOUS_NOTE_TEXT:4 note texts contain suspicious phrases DISC_QUALITY_SCORES:Quality scores are missing on all sequences. ONCALLER_COMMENT_PRESENT:1 comment descriptors were found (all same) SHORT_PROT_SEQUENCES:29 protein sequences are shorter than 50 aa. MISSING_GENOMEASSEMBLY_COMMENTS:1 bioseqs are missing GenomeAssembly structured comments MOLTYPE_NOT_MRNA:1 molecule types are not set as mRNA. TECHNIQUE_NOT_TSA:1 technique are not set as TSA MISSING_STRUCTURED_COMMENT:1 sequences do not include structured comments. MISSING_PROJECT:1236 sequences do not include project. DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) Detailed Report DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all unique) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for strain DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all unique) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for taxname DiscRep_ALL:DISC_FEATURE_COUNT::gene: 1273 present DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 1235 present DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 34 present DiscRep_ALL:DISC_FEATURE_COUNT::rRNA: 3 present DiscRep_ALL:DISC_FEATURE_COUNT::tmRNA: 1 present DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::1 nucleotide Bioseqs are present /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) DiscRep_ALL:OVERLAPPING_GENES::363 genes overlap another gene on the same strand. /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene virB8 wHa_contig000001:4300-4980 wHa_00005 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene virB9 wHa_contig000001:4967-5767 wHa_00006 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00010 wHa_contig000001:10415-10741 wHa_00010 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00011 wHa_contig000001:10726-11262 wHa_00011 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene dus wHa_contig000001:c30291-29293 wHa_00024 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00025 wHa_contig000001:c32183-30261 wHa_00025 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene prs wHa_contig000001:38836-39762 wHa_00030 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene gatC wHa_contig000001:39752-40105 wHa_00031 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ihfA wHa_contig000001:52791-53096 wHa_00044 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00045 wHa_contig000001:53096-53422 wHa_00045 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00049 wHa_contig000001:c57934-57770 wHa_00049 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00050 wHa_contig000001:c58088-57927 wHa_00050 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene cysS wHa_contig000001:c77630-76257 wHa_00072 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00073 wHa_contig000001:c78279-77623 wHa_00073 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene uvrC wHa_contig000001:c82398-80581 wHa_00078 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene glyS wHa_contig000001:c84499-82382 wHa_00079 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene hemB wHa_contig000001:c87287-86292 wHa_00082 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nuoH wHa_contig000001:c88305-87280 wHa_00083 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nqo3 wHa_contig000001:c90358-88289 wHa_00084 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00085 wHa_contig000001:c90555-90343 wHa_00085 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00086 wHa_contig000001:c91980-91159 wHa_00086 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene def wHa_contig000001:c92509-91970 wHa_00087 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rsmH wHa_contig000001:96757-97638 wHa_00092 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00093 wHa_contig000001:97635-97946 wHa_00093 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rplY wHa_contig000001:99028-99639 wHa_00095 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pth wHa_contig000001:99639-100187 wHa_00096 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00099 wHa_contig000001:c103402-103238 wHa_00099 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00100 wHa_contig000001:c103556-103395 wHa_00100 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00103 wHa_contig000001:104476-104751 wHa_00103 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00104 wHa_contig000001:104748-105218 wHa_00104 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00106 wHa_contig000001:c106665-106267 wHa_00106 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00107 wHa_contig000001:c106937-106662 wHa_00107 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00110 wHa_contig000001:107857-108018 wHa_00110 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00111 wHa_contig000001:108011-108175 wHa_00111 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00113 wHa_contig000001:c109810-109421 wHa_00113 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00114 wHa_contig000001:c110195-109785 wHa_00114 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00117 wHa_contig000001:c111994-111812 wHa_00117 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene smc_1 wHa_contig000001:c114186-111988 wHa_00118 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ssrA wHa_contig000001:121049-121377 wHa_00125 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00126 wHa_contig000001:121375-121812 wHa_00126 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00127 wHa_contig000001:122018-122239 wHa_00127 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene relG wHa_contig000001:122230-122505 wHa_00128 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00137 wHa_contig000001:131436-131600 wHa_00137 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00138 wHa_contig000001:131590-131754 wHa_00138 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ftsQ wHa_contig000001:c148958-148200 wHa_00152 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ddlB wHa_contig000001:c149886-148939 wHa_00153 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00161 wHa_contig000001:156099-156233 wHa_00161 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00162 wHa_contig000001:156230-156364 wHa_00162 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00170 wHa_contig000001:162706-162867 wHa_00170 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00171 wHa_contig000001:162860-163024 wHa_00171 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00192 wHa_contig000001:c188294-188160 wHa_00192 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00193 wHa_contig000001:c188425-188291 wHa_00193 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene engB wHa_contig000001:192407-193000 wHa_00197 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene argB wHa_contig000001:192975-193916 wHa_00198 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00201 wHa_contig000001:c196088-195606 wHa_00201 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ribH1 wHa_contig000001:c196516-196088 wHa_00202 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene yidC wHa_contig000001:c198203-196494 wHa_00203 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00206 wHa_contig000001:c200601-199930 wHa_00206 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00207 wHa_contig000001:c201998-200595 wHa_00207 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00218 wHa_contig000001:219651-219947 wHa_00218 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pleD wHa_contig000001:219919-221301 wHa_00219 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00221 wHa_contig000001:c223046-222906 wHa_00221 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00222 wHa_contig000001:c223660-223046 wHa_00222 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00227 wHa_contig000001:226664-227794 wHa_00227 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene tsaB wHa_contig000001:227794-228378 wHa_00228 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00231 wHa_contig000001:230060-230194 wHa_00231 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00232 wHa_contig000001:230191-230325 wHa_00232 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ltaA_1 wHa_contig000001:c241035-239983 wHa_00243 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ltaA_2 wHa_contig000001:c242096-241032 wHa_00244 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00245 wHa_contig000001:c243858-242083 wHa_00245 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00247 wHa_contig000001:c246546-244852 wHa_00247 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mshA wHa_contig000001:c248843-246507 wHa_00248 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene galE wHa_contig000001:c249759-248800 wHa_00249 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00253 wHa_contig000001:c258945-258757 wHa_00253 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ltrA_1 wHa_contig000001:c260255-258942 wHa_00254 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00264 wHa_contig000001:c275531-274395 wHa_00264 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00265 wHa_contig000001:c275814-275521 wHa_00265 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00271 wHa_contig000001:c283781-283593 wHa_00271 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ltrA_2 wHa_contig000001:c285091-283778 wHa_00272 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00276 wHa_contig000001:289365-289856 wHa_00276 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00277 wHa_contig000001:289856-290005 wHa_00277 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00278 wHa_contig000001:290026-291852 wHa_00278 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00279 wHa_contig000001:291852-292073 wHa_00279 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00281 wHa_contig000001:292733-292954 wHa_00281 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00282 wHa_contig000001:292935-293243 wHa_00282 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00283 wHa_contig000001:293363-293737 wHa_00283 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00284 wHa_contig000001:293734-294780 wHa_00284 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00286 wHa_contig000001:296370-297431 wHa_00286 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00287 wHa_contig000001:297406-297774 wHa_00287 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00290 wHa_contig000001:c300001-299345 wHa_00290 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00291 wHa_contig000001:c300366-299977 wHa_00291 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00294 wHa_contig000001:301195-301668 wHa_00294 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00295 wHa_contig000001:301655-302119 wHa_00295 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00296 wHa_contig000001:302122-302376 wHa_00296 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00297 wHa_contig000001:302373-302708 wHa_00297 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00298 wHa_contig000001:302711-303520 wHa_00298 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00299 wHa_contig000001:303520-304680 wHa_00299 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00301 wHa_contig000001:305718-306308 wHa_00301 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00302 wHa_contig000001:306305-306769 wHa_00302 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00304 wHa_contig000001:308344-308487 wHa_00304 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00305 wHa_contig000001:308462-309676 wHa_00305 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00306 wHa_contig000001:c310664-309837 wHa_00306 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00307 wHa_contig000001:c312730-310613 wHa_00307 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene eno wHa_contig000001:345135-346409 wHa_00330 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene obg wHa_contig000001:346397-347419 wHa_00331 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00340 wHa_contig000001:354974-355714 wHa_00340 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mepM wHa_contig000001:355711-356649 wHa_00341 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00342 wHa_contig000001:356633-357502 wHa_00342 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00343 wHa_contig000001:357670-357945 wHa_00343 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00344 wHa_contig000001:357926-358618 wHa_00344 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00345 wHa_contig000001:359011-359340 wHa_00345 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00346 wHa_contig000001:359324-359959 wHa_00346 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pyrG wHa_contig000001:c374193-372589 wHa_00355 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00356 wHa_contig000001:c374513-374193 wHa_00356 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene artM wHa_contig000001:c386328-385687 wHa_00367 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene artQ wHa_contig000001:c386959-386312 wHa_00368 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene artP wHa_contig000001:c387693-386959 wHa_00369 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene tatC wHa_contig000001:c389089-388328 wHa_00371 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene gap wHa_contig000001:c390183-389086 wHa_00372 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00373 wHa_contig000001:390355-390789 wHa_00373 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00374 wHa_contig000001:390764-391177 wHa_00374 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00379 wHa_contig000001:396694-397896 wHa_00379 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pipB2 wHa_contig000001:397865-399694 wHa_00380 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene gmk wHa_contig000001:399678-400283 wHa_00381 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00384 wHa_contig000001:c405828-405673 wHa_00384 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene tnpR wHa_contig000001:c407428-405776 wHa_00385 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00388 wHa_contig000001:c410259-409099 wHa_00388 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00389 wHa_contig000001:c411059-410259 wHa_00389 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00390 wHa_contig000001:c411397-411062 wHa_00390 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00391 wHa_contig000001:c411648-411394 wHa_00391 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00392 wHa_contig000001:c412115-411651 wHa_00392 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00393 wHa_contig000001:c412575-412102 wHa_00393 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00396 wHa_contig000001:413404-413793 wHa_00396 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00397 wHa_contig000001:413769-414425 wHa_00397 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene sppA_2 wHa_contig000001:c417514-416480 wHa_00401 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00402 wHa_contig000001:c419106-417514 wHa_00402 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00403 wHa_contig000001:c420936-419110 wHa_00403 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ankX_8 wHa_contig000001:c422417-420933 wHa_00404 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00412 wHa_contig000001:429735-430235 wHa_00412 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00413 wHa_contig000001:430232-431470 wHa_00413 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00418 wHa_contig000001:437445-437639 wHa_00418 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00419 wHa_contig000001:437636-439090 wHa_00419 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00420 wHa_contig000001:439101-439652 wHa_00420 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene gpFI wHa_contig000001:439645-440832 wHa_00421 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00423 wHa_contig000001:441516-441611 wHa_00423 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00424 wHa_contig000001:441595-441840 wHa_00424 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00426 wHa_contig000001:442319-444583 wHa_00426 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00427 wHa_contig000001:444583-444930 wHa_00427 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00428 wHa_contig000001:444927-445136 wHa_00428 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00443 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/home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nuoN wHa_contig000001:961886-963250 wHa_00938 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene birA wHa_contig000001:963268-964140 wHa_00939 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00940 wHa_contig000001:964137-964274 wHa_00940 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ccmE wHa_contig000001:964258-964650 wHa_00941 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene thrS wHa_contig000001:c971660-969759 wHa_00949 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00950 wHa_contig000001:c971872-971657 wHa_00950 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00951 wHa_contig000001:c971988-971866 wHa_00951 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nuoI wHa_contig000001:c972497-971988 wHa_00952 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene plsX wHa_contig000001:c978123-977026 wHa_00958 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rpmF wHa_contig000001:c978268-978074 wHa_00959 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mlaE wHa_contig000001:978596-979378 wHa_00960 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mkl wHa_contig000001:979371-980072 wHa_00961 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00969 wHa_contig000001:987267-987974 wHa_00969 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene xthA wHa_contig000001:987974-988753 wHa_00970 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00973 wHa_contig000001:c992818-992654 wHa_00973 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_00974 wHa_contig000001:c992972-992808 wHa_00974 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene lipB wHa_contig000001:1006532-1007149 wHa_00987 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ykfA wHa_contig000001:1007149-1008174 wHa_00988 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rplS wHa_contig000001:c1013170-1012793 wHa_00992 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene trmD wHa_contig000001:c1013864-1013154 wHa_00993 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01015 wHa_contig000001:c1038590-1037820 wHa_01015 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene psd wHa_contig000001:c1039279-1038587 wHa_01016 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene fgs wHa_contig000001:c1043378-1042089 wHa_01019 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01020 wHa_contig000001:c1043965-1043375 wHa_01020 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01028 wHa_contig000001:1049933-1050262 wHa_01028 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01029 wHa_contig000001:1050246-1050881 wHa_01029 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rpoH wHa_contig000001:1052282-1053175 wHa_01031 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01032 wHa_contig000001:1053168-1053665 wHa_01032 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene petC wHa_contig000001:c1057349-1056243 wHa_01036 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene petB wHa_contig000001:c1058578-1057349 wHa_01037 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nfuA wHa_contig000001:1060879-1061463 wHa_01041 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene hisS wHa_contig000001:1061460-1062683 wHa_01042 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ffh wHa_contig000001:c1066101-1064758 wHa_01044 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mnhA1 wHa_contig000001:c1067645-1066086 wHa_01045 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene der wHa_contig000001:1082238-1083563 wHa_01061 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene dsbB wHa_contig000001:1083560-1084081 wHa_01062 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene coq7 wHa_contig000001:1084056-1084598 wHa_01063 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01064 wHa_contig000001:c1085732-1085097 wHa_01064 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01065 wHa_contig000001:c1086045-1085716 wHa_01065 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ruvB wHa_contig000001:c1096209-1095229 wHa_01076 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ruvA wHa_contig000001:c1096787-1096206 wHa_01077 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01081 wHa_contig000001:c1100434-1100195 wHa_01081 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rsfS wHa_contig000001:c1100742-1100425 wHa_01082 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01083 wHa_contig000001:1100847-1101533 wHa_01083 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene rppH wHa_contig000001:1101526-1102014 wHa_01084 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene ycfH wHa_contig000001:1102011-1102778 wHa_01085 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nqo5 wHa_contig000001:c1104332-1103760 wHa_01087 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene nuoB wHa_contig000001:c1104831-1104325 wHa_01088 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01107 wHa_contig000001:1125316-1125486 wHa_01107 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene xerD_2 wHa_contig000001:1125476-1126462 wHa_01108 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mutM wHa_contig000001:1133007-1134056 wHa_01118 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pdxH wHa_contig000001:1134016-1134666 wHa_01119 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01126 wHa_contig000001:c1140325-1140116 wHa_01126 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01127 wHa_contig000001:c1140626-1140282 wHa_01127 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01128 wHa_contig000001:c1140910-1140623 wHa_01128 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene virB4_2 wHa_contig000001:1146842-1149196 wHa_01135 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01136 wHa_contig000001:1149156-1151963 wHa_01136 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01151 wHa_contig000001:c1165783-1164842 wHa_01151 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01152 wHa_contig000001:c1166567-1165776 wHa_01152 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01166 wHa_contig000001:1182388-1182975 wHa_01166 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene dapF wHa_contig000001:1182953-1183744 wHa_01167 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene parA wHa_contig000001:1192211-1193053 wHa_01177 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene parB wHa_contig000001:1193050-1193901 wHa_01178 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01179 wHa_contig000001:c1194653-1194018 wHa_01179 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01180 wHa_contig000001:c1194966-1194637 wHa_01180 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene algA wHa_contig000001:1200410-1201699 wHa_01185 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01186 wHa_contig000001:1201680-1201808 wHa_01186 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene lolE wHa_contig000001:1201833-1203062 wHa_01187 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01188 wHa_contig000001:1203055-1203786 wHa_01188 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01189 wHa_contig000001:1203783-1205003 wHa_01189 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene gph wHa_contig000001:1218113-1218751 wHa_01202 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01203 wHa_contig000001:1218751-1219236 wHa_01203 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene pyrK wHa_contig000001:1236642-1237262 wHa_01220 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01221 wHa_contig000001:1237246-1237797 wHa_01221 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01228 wHa_contig000001:1246478-1248475 wHa_01228 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01229 wHa_contig000001:1248465-1249061 wHa_01229 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01241 wHa_contig000001:1258766-1259581 wHa_01241 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene yciK wHa_contig000001:1259568-1260323 wHa_01242 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01244 wHa_contig000001:1264388-1264603 wHa_01244 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01245 wHa_contig000001:1264600-1264860 wHa_01245 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene wHa_01246 wHa_contig000001:1264811-1265194 wHa_01246 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mnhC1 wHa_contig000001:c1268893-1268582 wHa_01249 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mrpB wHa_contig000001:c1269309-1268890 wHa_01250 /home/yquentin/work/wolbachia/prokka/wHa/wHa:Gene mrpA_2 wHa_contig000001:c1269829-1269302 wHa_01251 DiscRep_ALL:OVERLAPPING_CDS::8 coding regions overlap another coding region with a similar or identical name. DiscRep_SUB:OVERLAPPING_CDS::8 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS L-allo-threonine aldolase wHa_contig000001:c241035-239983 wHa_00243 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS L-allo-threonine aldolase wHa_contig000001:c242096-241032 wHa_00244 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Ankyrin repeats (3 copies) wHa_contig000001:c310664-309837 wHa_00306 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Ankyrin repeats (3 copies) wHa_contig000001:c312730-310613 wHa_00307 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS putative zinc protease wHa_contig000001:767398-768621 wHa_00745 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS putative zinc protease wHa_contig000001:768608-769927 wHa_00746 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS TrbL/VirB6 plasmid conjugal transfer protein wHa_contig000001:c875099-872154 wHa_00849 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS TrbL/VirB6 plasmid conjugal transfer protein wHa_contig000001:c877483-875096 wHa_00850 DiscRep_ALL:RNA_CDS_OVERLAP::1 coding regions overlap RNA features DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs (no containment) DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs on the same strand (no containment) /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Stringent starvation protein B wHa_contig000001:121375-121812 wHa_00126 /home/yquentin/work/wolbachia/prokka/wHa/wHa:tmRNA transfer-messenger RNA, SsrA wHa_contig000001:121049-121377 wHa_00125 DiscRep_ALL:SUSPECT_PRODUCT_NAMES::8 product_names contain suspect phrase or characters DiscRep_SUB:SUSPECT_PRODUCT_NAMES::Putative Typo DiscRep_SUB:SUSPECT_PRODUCT_NAMES::1 features may contain systematic gene product identifiers from phage /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS gpW wHa_contig000001:291852-292073 wHa_00279 DiscRep_SUB:SUSPECT_PRODUCT_NAMES::May contain database identifier more appropriate in note; remove from product name DiscRep_SUB:SUSPECT_PRODUCT_NAMES::4 features Contains underscore /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Phage tail protein (Tail_P2_I) wHa_contig000001:303520-304680 wHa_00299 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Phage tail protein (Tail_P2_I) wHa_contig000001:c410259-409099 wHa_00388 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Aspartate kinase Ask_LysC wHa_contig000001:952575-953807 wHa_00927 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Putative O-methyltransferase/MSMEI_4947 wHa_contig000001:1046009-1046656 wHa_01024 DiscRep_SUB:SUSPECT_PRODUCT_NAMES::use protein instead of gene as appropriate DiscRep_SUB:SUSPECT_PRODUCT_NAMES::3 features contains 'gene' /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Gene 25-like lysozyme wHa_contig000001:302373-302708 wHa_00297 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Gene 25-like lysozyme wHa_contig000001:c411397-411062 wHa_00390 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS Phage late control gene D protein (GPD) wHa_contig000001:445137-446081 wHa_00429 DiscRep_ALL:DISC_SUSPICIOUS_NOTE_TEXT::4 note texts contain suspicious phrases DiscRep_SUB:DISC_SUSPICIOUS_NOTE_TEXT::4 note texts contain 'homolog' /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS hypothetical protein wHa_contig000001:c135986-135378 wHa_00141 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS hypothetical protein wHa_contig000001:c196088-195606 wHa_00201 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS hypothetical protein wHa_contig000001:854335-854793 wHa_00830 /home/yquentin/work/wolbachia/prokka/wHa/wHa:CDS hypothetical protein wHa_contig000001:1143414-1143935 wHa_01131 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. DiscRep_ALL:ONCALLER_COMMENT_PRESENT::1 comment descriptors were found (all same) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001:Annotated using prokka 1.10 from http://www.vicbioinformatics.com DiscRep_ALL:SHORT_PROT_SEQUENCES::29 protein sequences are shorter than 50 aa. /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00161 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00162 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00179 (length 37) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00186 (length 45) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00192 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00193 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00209 (length 48) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00221 (length 46) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00231 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00232 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00258 (length 41) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00277 (length 49) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00292 (length 47) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00304 (length 47) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00395 (length 47) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00423 (length 31) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00497 (length 47) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00527 (length 48) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00572 (length 42) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00619 (length 35) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00625 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00726 (length 34) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00775 (length 37) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00786 (length 33) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00822 (length 33) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00929 (length 44) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00940 (length 45) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00951 (length 40) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_01186 (length 42) DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::1 bioseqs are missing GenomeAssembly structured comments /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) DiscRep_ALL:MOLTYPE_NOT_MRNA::1 molecule types are not set as mRNA. /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) DiscRep_ALL:TECHNIQUE_NOT_TSA::1 technique are not set as TSA /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) DiscRep_ALL:MISSING_STRUCTURED_COMMENT::1 sequences do not include structured comments. /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) DiscRep_ALL:MISSING_PROJECT::1236 sequences do not include project. /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_contig000001 (length 1295804) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00001 (length 460) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00002 (length 424) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00004 (length 360) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00005 (length 226) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00006 (length 266) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00007 (length 498) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00008 (length 330) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00009 (length 662) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00010 (length 108) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00011 (length 178) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00012 (length 279) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00013 (length 124) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00014 (length 159) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00015 (length 691) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00016 (length 390) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00018 (length 278) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00019 (length 146) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00020 (length 217) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00021 (length 172) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00022 (length 133) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00023 (length 2837) /home/yquentin/work/wolbachia/prokka/wHa/wHa:Prokka:wHa_00024 (length 332) 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