Discrepancy Report Results

Summary
DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
DISC_FEATURE_COUNT:gene: 918 present
DISC_FEATURE_COUNT:CDS: 880 present
DISC_FEATURE_COUNT:tRNA: 34 present
DISC_FEATURE_COUNT:rRNA: 3 present
DISC_FEATURE_COUNT:tmRNA: 1 present
DISC_COUNT_NUCLEOTIDES:10 nucleotide Bioseqs are present
OVERLAPPING_GENES:163 genes overlap another gene on the same strand.
OVERLAPPING_CDS:4 coding regions overlap another coding region with a similar or identical name.
RNA_CDS_OVERLAP:2 coding regions overlap RNA features
SUSPECT_PRODUCT_NAMES:2 product_names contain suspect phrase or characters
	May contain database identifier more appropriate in note; remove from product name
		2 features Contains underscore
DISC_SUSPICIOUS_NOTE_TEXT:6 note texts contain suspicious phrases
NO_ANNOTATION:3 bioseqs have no features
DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
FATAL: DISC_SUSPECT_RRNA_PRODUCTS:1 rRNA product names contain suspect phrase
FATAL: DISC_SHORT_RRNA:1 rRNA features are too short
ONCALLER_COMMENT_PRESENT:10 comment descriptors were found (all same)
SHORT_PROT_SEQUENCES:64 protein sequences are shorter than 50 aa.
MISSING_GENOMEASSEMBLY_COMMENTS:10 bioseqs are missing GenomeAssembly structured comments
FIND_OVERLAPPED_GENES:1 genes completely overlapped by other genes
MOLTYPE_NOT_MRNA:10 molecule types are not set as mRNA.
TECHNIQUE_NOT_TSA:10 technique are not set as TSA
MISSING_STRUCTURED_COMMENT:10 sequences do not include structured comments.
MISSING_PROJECT:890 sequences do not include project.
FATAL: RRNA_NAME_CONFLICTS:1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)


Detailed Report

DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::10 sources have 'wLsig' for strain
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::10 sources have 'Genus wolbachia endosymbiont' for taxname
DiscRep_ALL:DISC_FEATURE_COUNT::gene: 918 present
DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 880 present
DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 34 present
DiscRep_ALL:DISC_FEATURE_COUNT::rRNA: 3 present
DiscRep_ALL:DISC_FEATURE_COUNT::tmRNA: 1 present
DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::10 nucleotide Bioseqs are present
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000001 (length 605213)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000002 (length 245144)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000003 (length 135750)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000004 (length 38729)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000005 (length 16626)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000006 (length 5094)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000007 (length 1163)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000008 (length 500)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000009 (length 375)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000010 (length 342)

DiscRep_ALL:OVERLAPPING_GENES::163 genes overlap another gene on the same strand.
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ptlE	wLsig_contig000001:65148-65831	wLsig_00055
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	virB9	wLsig_contig000001:65818-66624	wLsig_00056
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	yidC	wLsig_contig000001:79073-80791	wLsig_00065
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ribH1	wLsig_contig000001:80769-81197	wLsig_00066
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00067	wLsig_contig000001:81197-81679	wLsig_00067
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	infA	wLsig_contig000001:81813-82076	wLsig_00068
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	yhdE	wLsig_contig000001:82054-82650	wLsig_00069
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ubiE	wLsig_contig000001:96264-96992	wLsig_00078
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00079	wLsig_contig000001:96989-97153	wLsig_00079
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	sdhC	wLsig_contig000001:109383-109760	wLsig_00089
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00090	wLsig_contig000001:109757-110122	wLsig_00090
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00100	wLsig_contig000001:c125927-125058	wLsig_00100
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mepM	wLsig_contig000001:c127062-125911	wLsig_00101
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00102	wLsig_contig000001:c127808-127059	wLsig_00102
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00107	wLsig_contig000001:c133045-132623	wLsig_00107
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00108	wLsig_contig000001:c133277-132990	wLsig_00108
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	cdsA	wLsig_contig000001:c141588-140962	wLsig_00117
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	uppS	wLsig_contig000001:c142273-141578	wLsig_00118
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rnhA	wLsig_contig000001:158116-158553	wLsig_00135
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00136	wLsig_contig000001:158546-161497	wLsig_00136
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	gap	wLsig_contig000001:162700-163686	wLsig_00137
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	tatC	wLsig_contig000001:163683-164450	wLsig_00138
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00139	wLsig_contig000001:c164890-164708	wLsig_00139
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00140	wLsig_contig000001:c165026-164838	wLsig_00140
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	dapB	wLsig_contig000001:166961-167791	wLsig_00142
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	pstB	wLsig_contig000001:167788-168546	wLsig_00143
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00159	wLsig_contig000001:192964-193260	wLsig_00159
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	pleD	wLsig_contig000001:193232-194620	wLsig_00160
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpsF	wLsig_contig000001:198712-199494	wLsig_00162
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpsR	wLsig_contig000001:199494-199769	wLsig_00163
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	bolA	wLsig_contig000001:206679-206990	wLsig_00170
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	metC	wLsig_contig000001:206965-208170	wLsig_00171
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00176	wLsig_contig000001:c214993-213776	wLsig_00176
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00177	wLsig_contig000001:c215724-214990	wLsig_00177
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	lolE	wLsig_contig000001:c216946-215717	wLsig_00178
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	murB	wLsig_contig000001:c218112-217225	wLsig_00179
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	hemC	wLsig_contig000001:c218981-218103	wLsig_00180
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	pyrG	wLsig_contig000001:c227326-225722	wLsig_00185
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00186	wLsig_contig000001:c227646-227326	wLsig_00186
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	petB	wLsig_contig000001:284007-285233	wLsig_00229
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	petC	wLsig_contig000001:285233-285997	wLsig_00230
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mnhC1	wLsig_contig000001:c296793-296467	wLsig_00237
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mrpB	wLsig_contig000001:c297209-296793	wLsig_00238
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mnhA1	wLsig_contig000001:c297774-297202	wLsig_00239
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mnhG1	wLsig_contig000001:c298018-297731	wLsig_00240
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00289	wLsig_contig000001:c348092-347640	wLsig_00289
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ssrA	wLsig_contig000001:c348411-348076	wLsig_00290
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00291	wLsig_contig000001:c348380-348222	wLsig_00291
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00297	wLsig_contig000001:c360845-360012	wLsig_00297
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	secE	wLsig_contig000001:c361035-360835	wLsig_00298
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	def	wLsig_contig000001:373078-373617	wLsig_00313
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00314	wLsig_contig000001:373607-374407	wLsig_00314
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nfuA	wLsig_contig000001:395130-395702	wLsig_00330
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	hisS	wLsig_contig000001:395699-396940	wLsig_00331
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	lspA	wLsig_contig000001:c402538-402074	wLsig_00335
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ribF	wLsig_contig000001:c403563-402535	wLsig_00336
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00349	wLsig_contig000001:c420263-417681	wLsig_00349
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	murJ	wLsig_contig000001:c421753-420260	wLsig_00350
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00362	wLsig_contig000001:c434496-434338	wLsig_00362
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	cgtA	wLsig_contig000001:c435499-434477	wLsig_00363
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	eno_1	wLsig_contig000001:c436766-435477	wLsig_00364
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00368	wLsig_contig000001:c441197-440553	wLsig_00368
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00369	wLsig_contig000001:c444486-441190	wLsig_00369
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00370	wLsig_contig000001:c447684-444592	wLsig_00370
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00371	wLsig_contig000001:c450101-447681	wLsig_00371
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00372	wLsig_contig000001:c452809-450152	wLsig_00372
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	virB4_1	wLsig_contig000001:c455207-452802	wLsig_00373
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	fabF	wLsig_contig000001:c467454-466186	wLsig_00387
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	acpP	wLsig_contig000001:c467726-467451	wLsig_00388
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00389	wLsig_contig000001:467806-468795	wLsig_00389
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00390	wLsig_contig000001:468788-469732	wLsig_00390
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nuoJ	wLsig_contig000001:484842-485429	wLsig_00401
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nuoK	wLsig_contig000001:485420-485728	wLsig_00402
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nuoM	wLsig_contig000001:487593-489035	wLsig_00404
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nuoN	wLsig_contig000001:489032-490429	wLsig_00405
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	birA	wLsig_contig000001:490431-491342	wLsig_00406
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00407	wLsig_contig000001:491339-491476	wLsig_00407
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ccmE	wLsig_contig000001:491460-491846	wLsig_00408
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpmF	wLsig_contig000001:493526-493753	wLsig_00412
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	plsX	wLsig_contig000001:493704-494801	wLsig_00413
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	fabH	wLsig_contig000001:494794-495774	wLsig_00414
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	pepE	wLsig_contig000001:c497949-496282	wLsig_00416
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	mnmG	wLsig_contig000001:c499996-497936	wLsig_00417
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00424	wLsig_contig000001:507454-508776	wLsig_00424
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	dus	wLsig_contig000001:508761-509717	wLsig_00425
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00453	wLsig_contig000001:c543641-543516	wLsig_00453
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	tsaD	wLsig_contig000001:c544627-543620	wLsig_00454
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ykfA	wLsig_contig000001:c558928-557924	wLsig_00465
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	lipB	wLsig_contig000001:c559545-558928	wLsig_00466
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	xerD	wLsig_contig000001:c564305-563319	wLsig_00471
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00472	wLsig_contig000001:c564465-564295	wLsig_00472
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00475	wLsig_contig000001:c568545-568378	wLsig_00475
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00476	wLsig_contig000001:c568798-568490	wLsig_00476
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00484	wLsig_contig000001:c584480-581685	wLsig_00484
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	virB4_2	wLsig_contig000001:c586815-584461	wLsig_00485
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	prs	wLsig_contig000002:24758-25684	wLsig_00514
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	gatC	wLsig_contig000002:25674-26027	wLsig_00515
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nuoH	wLsig_contig000002:c36802-35786	wLsig_00525
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	nqo3	wLsig_contig000002:c38834-36786	wLsig_00526
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00531	wLsig_contig000002:c46405-46217	wLsig_00531
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00532	wLsig_contig000002:c46487-46389	wLsig_00532
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00536	wLsig_contig000002:50860-51567	wLsig_00536
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	xthA	wLsig_contig000002:51567-52346	wLsig_00537
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00540	wLsig_contig000002:54566-55123	wLsig_00540
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	dapF	wLsig_contig000002:55108-55884	wLsig_00541
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	acpS	wLsig_contig000002:c61433-61056	wLsig_00550
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	proS	wLsig_contig000002:c62707-61430	wLsig_00551
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00571	wLsig_contig000002:c81921-81649	wLsig_00571
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00572	wLsig_contig000002:c82024-81911	wLsig_00572
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpoH	wLsig_contig000002:101878-102771	wLsig_00587
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00588	wLsig_contig000002:102764-103261	wLsig_00588
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	psd	wLsig_contig000002:106795-107487	wLsig_00592
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00593	wLsig_contig000002:107484-108254	wLsig_00593
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplS	wLsig_contig000002:c115978-115601	wLsig_00601
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	trmD	wLsig_contig000002:c116669-115962	wLsig_00602
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	iscA	wLsig_contig000002:126343-126747	wLsig_00611
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00612	wLsig_contig000002:126740-127195	wLsig_00612
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	hscA_1	wLsig_contig000002:127173-128930	wLsig_00613
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	pyrK	wLsig_contig000002:148275-148904	wLsig_00631
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ygfA	wLsig_contig000002:148888-149412	wLsig_00632
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ccmH	wLsig_contig000002:c170498-170124	wLsig_00649
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00650	wLsig_contig000002:c171531-170482	wLsig_00650
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	coaE	wLsig_contig000002:180583-181095	wLsig_00658
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00659	wLsig_contig000002:181092-181184	wLsig_00659
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00681	wLsig_contig000002:c208147-207653	wLsig_00681
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	gph	wLsig_contig000002:c208788-208144	wLsig_00682
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ffh	wLsig_contig000002:c216683-215340	wLsig_00688
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ndhB	wLsig_contig000002:c218173-216668	wLsig_00689
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	dgt	wLsig_contig000002:232217-233416	wLsig_00702
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ribD	wLsig_contig000002:233416-234549	wLsig_00703
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00710	wLsig_contig000002:242733-242915	wLsig_00710
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00711	wLsig_contig000002:242893-243057	wLsig_00711
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpmB	wLsig_contig000003:7660-7974	wLsig_00724
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	lipA	wLsig_contig000003:7967-8830	wLsig_00725
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	atpA	wLsig_contig000003:c24496-22955	wLsig_00737
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	atpH_2	wLsig_contig000003:c25053-24493	wLsig_00738
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	adk	wLsig_contig000003:c28383-27733	wLsig_00744
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	secY	wLsig_contig000003:c29708-28380	wLsig_00745
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplX	wLsig_contig000003:c33250-32933	wLsig_00753
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplN	wLsig_contig000003:c33609-33250	wLsig_00754
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpsQ	wLsig_contig000003:c33852-33619	wLsig_00755
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpmC	wLsig_contig000003:c34060-33845	wLsig_00756
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplW	wLsig_contig000003:c36901-36614	wLsig_00762
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplD	wLsig_contig000003:c37497-36898	wLsig_00763
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rplC	wLsig_contig000003:c38240-37515	wLsig_00764
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	rpsJ	wLsig_contig000003:c38602-38237	wLsig_00765
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00780	wLsig_contig000003:50315-50746	wLsig_00780
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	tsaB	wLsig_contig000003:50734-51348	wLsig_00781
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	argB	wLsig_contig000003:c59537-58596	wLsig_00791
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	engB	wLsig_contig000003:c60105-59512	wLsig_00792
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	bamB	wLsig_contig000003:69787-70896	wLsig_00800
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	lpd3	wLsig_contig000003:70889-72277	wLsig_00801
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	tsaA	wLsig_contig000003:87022-87621	wLsig_00814
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	trxB	wLsig_contig000003:87608-88564	wLsig_00815
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	coq7	wLsig_contig000003:c111420-110878	wLsig_00841
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	dsbB	wLsig_contig000003:c111925-111395	wLsig_00842
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	der	wLsig_contig000003:c113337-111922	wLsig_00843
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00851	wLsig_contig000003:121824-123098	wLsig_00851
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00852	wLsig_contig000003:123091-123279	wLsig_00852
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	znuC	wLsig_contig000005:9060-9800	wLsig_00907
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	ubiB	wLsig_contig000005:9797-11227	wLsig_00908
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	hscA_2	wLsig_contig000007:20-982	wLsig_00917
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	hscA_3	wLsig_contig000007:943-1089	wLsig_00918

DiscRep_ALL:OVERLAPPING_CDS::4 coding regions overlap another coding region with a similar or identical name.
DiscRep_SUB:OVERLAPPING_CDS::4 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wLsig_contig000001:c447684-444592	wLsig_00370
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wLsig_contig000001:c450101-447681	wLsig_00371
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	Chaperone protein HscA	wLsig_contig000007:20-982	wLsig_00917
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	Chaperone protein HscA	wLsig_contig000007:943-1089	wLsig_00918

DiscRep_ALL:RNA_CDS_OVERLAP::2 coding regions overlap RNA features
FATAL: DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions are completely contained in RNAs
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000001:c348380-348222	wLsig_00291
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:tmRNA	transfer-messenger RNA, SsrA	wLsig_contig000001:c348411-348076	wLsig_00290

DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs (no containment)
DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs on the same strand (no containment)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	Stringent starvation protein B	wLsig_contig000001:c348092-347640	wLsig_00289
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:tmRNA	transfer-messenger RNA, SsrA	wLsig_contig000001:c348411-348076	wLsig_00290

DiscRep_ALL:SUSPECT_PRODUCT_NAMES::2 product_names contain suspect phrase or characters
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::May contain database identifier more appropriate in note; remove from product name
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::2 features Contains underscore
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	Putative O-methyltransferase/MSMEI_4947	wLsig_contig000002:c79196-78546	wLsig_00568
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	Aspartate kinase Ask_LysC	wLsig_contig000002:85076-86233	wLsig_00575

DiscRep_ALL:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain suspicious phrases
DiscRep_SUB:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain 'homolog'
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000001:81197-81679	wLsig_00067
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000001:c138304-136478	wLsig_00112
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000001:c255181-254570	wLsig_00205
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000001:c591248-590730	wLsig_00490
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000002:77891-78544	wLsig_00567
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:CDS	hypothetical protein	wLsig_contig000002:126740-127195	wLsig_00612

DiscRep_ALL:NO_ANNOTATION::3 bioseqs have no features
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000008 (length 500)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000009 (length 375)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000010 (length 342)

DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.

FATAL: DiscRep_ALL:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contain suspect phrase
FATAL: DiscRep_SUB:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contains 'partial'
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:rRNA	5S ribosomal RNA (partial)	wLsig_contig000001:25150-25238	wLsig_00017

FATAL: DiscRep_ALL:DISC_SHORT_RRNA::1 rRNA features are too short
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:rRNA	5S ribosomal RNA (partial)	wLsig_contig000001:25150-25238	wLsig_00017

DiscRep_ALL:ONCALLER_COMMENT_PRESENT::10 comment descriptors were found (all same)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000001:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000002:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000003:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000004:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000005:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000006:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000007:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000008:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000009:Annotated using prokka 1.10 from http://www.vicbioinformatics.com
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000010:Annotated using prokka 1.10 from http://www.vicbioinformatics.com

DiscRep_ALL:SHORT_PROT_SEQUENCES::64 protein sequences are shorter than 50 aa.
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00026 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00031 (length 48)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00047 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00076 (length 39)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00104 (length 35)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00194 (length 33)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00213 (length 36)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00250 (length 40)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00255 (length 47)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00257 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00264 (length 47)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00270 (length 35)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00277 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00326 (length 46)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00329 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00344 (length 49)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00357 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00378 (length 36)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00395 (length 44)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00400 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00407 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00453 (length 41)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00532 (length 32)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00535 (length 34)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00538 (length 35)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00546 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00557 (length 44)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00558 (length 43)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00561 (length 48)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00572 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00594 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00657 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00659 (length 30)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00662 (length 48)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00670 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00687 (length 43)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00692 (length 36)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00695 (length 42)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00705 (length 40)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00707 (length 42)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00718 (length 43)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00730 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00766 (length 30)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00771 (length 37)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00773 (length 32)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00777 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00778 (length 36)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00779 (length 44)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00787 (length 31)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00788 (length 41)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00799 (length 47)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00802 (length 49)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00816 (length 31)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00817 (length 33)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00820 (length 42)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00832 (length 43)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00844 (length 41)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00855 (length 30)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00856 (length 39)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00857 (length 41)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00858 (length 43)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00867 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00897 (length 45)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_00918 (length 48)

DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::10 bioseqs are missing GenomeAssembly structured comments
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000001 (length 605213)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000002 (length 245144)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000003 (length 135750)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000004 (length 38729)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000005 (length 16626)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000006 (length 5094)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000007 (length 1163)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000008 (length 500)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000009 (length 375)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000010 (length 342)

DiscRep_ALL:FIND_OVERLAPPED_GENES::1 genes completely overlapped by other genes
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Gene	wLsig_00291	wLsig_contig000001:c348380-348222	wLsig_00291

DiscRep_ALL:MOLTYPE_NOT_MRNA::10 molecule types are not set as mRNA.
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000001 (length 605213)
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:Prokka:wLsig_contig000002 (length 245144)
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DiscRep_ALL:TECHNIQUE_NOT_TSA::10 technique are not set as TSA
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DiscRep_ALL:MISSING_STRUCTURED_COMMENT::10 sequences do not include structured comments.
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DiscRep_ALL:MISSING_PROJECT::890 sequences do not include project.
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FATAL: DiscRep_ALL:RRNA_NAME_CONFLICTS::1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
/home/yquentin/work/wolbachia/prokka/wLsig/wLsig:rRNA	5S ribosomal RNA (partial)	wLsig_contig000001:25150-25238	wLsig_00017

DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::10 Molinfos are missing field technique
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