[10:41:22] Command: --force --outdir /home/yquentin/work/wolbachia/prokka/wMelPop --addgenes --prefix wMelPop --locustag wMelPop --species Wolbachia pipientis --strain wMelPop --compliant --quiet /home/yquentin/work/wolbachia/prokka/wMelPop.fna
[10:41:22] Looking for 'aragorn' - found /usr/local/bioinfo/bin/aragorn
[10:41:22] Determined aragorn version is 1.2
[10:41:22] Looking for 'barrnap' - found /usr/local/bioinfo/bin/barrnap
[10:41:22] Determined barrnap version is 0.5
[10:41:22] Looking for 'blastp' - found /usr/local/bioinfo/src/NCBI_Blast+/ncbi-blast-2.6.0+/bin/blastp
[10:41:23] Determined blastp version is 2.6
[10:41:23] Looking for 'cmpress' - found /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../binaries/linux/cmpress
[10:41:23] Determined cmpress version is 1.1
[10:41:23] Looking for 'cmscan' - found /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../binaries/linux/cmscan
[10:41:23] Determined cmscan version is 1.1
[10:41:23] Looking for 'egrep' - found /bin/egrep
[10:41:23] Looking for 'find' - found /bin/find
[10:41:23] Looking for 'grep' - found /bin/grep
[10:41:23] Looking for 'hmmpress' - found /usr/local/bioinfo/bin/hmmpress
[10:41:23] Determined hmmpress version is 3.1
[10:41:23] Looking for 'hmmscan' - found /usr/local/bioinfo/bin/hmmscan
[10:41:23] Determined hmmscan version is 3.1
[10:41:23] Looking for 'less' - found /usr/bin/less
[10:41:23] Looking for 'makeblastdb' - found /usr/local/bioinfo/src/NCBI_Blast+/ncbi-blast-2.6.0+/bin/makeblastdb
[10:41:23] Determined makeblastdb version is 2.6
[10:41:23] Looking for 'minced' - found /usr/local/bioinfo/bin/minced
[10:41:23] Determined minced version is 1.6
[10:41:23] Looking for 'parallel' - found /usr/local/bioinfo/bin/parallel
[10:41:23] Determined parallel version is 20141022
[10:41:23] Looking for 'prodigal' - found /usr/local/bioinfo/bin/prodigal
[10:41:23] Determined prodigal version is 2.6
[10:41:23] Looking for 'rnammer' - found /usr/local/bioinfo/bin/rnammer
[10:41:23] Determined rnammer version is 1.2
[10:41:23] Looking for 'sed' - found /bin/sed
[10:41:23] Looking for 'signalp' - found /usr/local/bioinfo/bin/signalp
[10:41:24] Determined signalp version is 4.1
[10:41:24] Looking for 'tbl2asn' - found /home/yquentin/save/scripts/tbl2asn
[10:41:24] Determined tbl2asn version is 25.3
[10:41:24] Using genetic code table 11.
[10:41:24] Loading and checking input file: /home/yquentin/work/wolbachia/prokka/wMelPop.fna
[10:41:24] Wrote 25 contigs
[10:41:24] Predicting tRNAs and tmRNAs
[10:41:24] Running: aragorn -gc11  -w \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/wMelPop\.fna
[10:41:24] 1 tRNA-Thr c[14004,14077] 34 (ggt)
[10:41:24] 2 tRNA-Met c[15754,15830] 35 (cat)
[10:41:24] 3 tRNA-Val c[60505,60577] 34 (tac)
[10:41:24] 4 tRNA-Pro c[66958,67033] 36 (tgg)
[10:41:24] 5 tRNA-Glu c[67965,68037] 34 (ttc)
[10:41:24] 6 tRNA-Cys [93980,94052] 34 (gca)
[10:41:24] 7 tRNA-Ser [116486,116578] 36 (gct)
[10:41:24] 8 tRNA-Leu [179547,179634] 35 (gag)
[10:41:24] 9 tRNA-Trp [193559,193632] 34 (cca)
[10:41:24] 10 tRNA-Arg c[220791,220868] 36 (acg)
[10:41:24] 11 tmRNA* c[291426,291761] 195,245 ANDNFAAEDNVDAIAA*
[10:41:24] 12 tRNA-Ile [299165,299241] 35 (gat)
[10:41:24] 13 tRNA-Arg [315148,315224] 35 (cct)
[10:41:24] 14 tRNA-Leu c[474573,474655] 35 (tag)
[10:41:24] 15 tRNA-Leu [509405,509488] 34 (caa)
[10:41:24] 16 tRNA-Leu [542820,542906] 35 (taa)
[10:41:24] 1 tRNA-Ser [49719,49807] 36 (gga)
[10:41:24] 2 tRNA-Met [87459,87532] 34 (cat)
[10:41:24] 3 tRNA-Gln c[120989,121063] 33 (ttg)
[10:41:24] 4 tRNA-Asn [168048,168120] 33 (gtt)
[10:41:24] 1 tRNA-Ser [3726,3811] 35 (cag)
[10:41:24] 2 tRNA-His c[16771,16846] 34 (gtg)
[10:41:24] 3 tRNA-Val [50179,50252] 34 (gac)
[10:41:24] 4 tRNA-Arg c[126084,126158] 35 (tct)
[10:41:24] 1 tRNA-Ala c[26289,26364] 34 (tgc)
[10:41:24] 2 tRNA-Lys [26706,26779] 34 (ttt)
[10:41:24] 3 tRNA-Ser [33096,33184] 35 (tga)
[10:41:24] 1 tRNA-Gly c[22412,22483] 33 (tcc)
[10:41:24] 2 tRNA-Tyr c[22488,22570] 35 (gta)
[10:41:24] 1 tRNA-Gly c[2298,2371] 34 (gcc)
[10:41:24] 2 tRNA-Met [3666,3742] 35 (cat)
[10:41:24] 1 tRNA-Asp c[2959,3035] 35 (gtc)
[10:41:24] 2 tRNA-Phe [8685,8759] 34 (gaa)
[10:41:24] Found 33 tRNAs
[10:41:24] Predicting Ribosomal RNAs
[10:41:24] Running Barrnap with 8 threads
[10:41:25] 1 gnl|Prokka|wMelPop_contig000013 76117 16S ribosomal RNA
[10:41:25] 2 gnl|Prokka|wMelPop_contig000013 356603 23S ribosomal RNA
[10:41:25] 3 gnl|Prokka|wMelPop_contig000013 359433 5S ribosomal RNA
[10:41:25] Found 3 rRNAs
[10:41:25] Skipping ncRNA search, enable with --rfam if desired.
[10:41:25] Total of 35 tRNA + rRNA features
[10:41:25] Searching for CRISPR repeats
[10:41:25] Found 0 CRISPRs
[10:41:25] Predicting coding sequences
[10:41:25] Contigs total 1239155 bp, so using single mode
[10:41:25] Running: prodigal -i \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/wMelPop\.fna -c -m -g 11 -p single -f sco -q
[10:41:27] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wMelPop_contig000013:15794..18055 on + strand
[10:41:27] Excluding CDS which overlaps existing RNA (rRNA) at gnl|Prokka|wMelPop_contig000013:76553..76675 on + strand
[10:41:27] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wMelPop_contig000013:474491..474649 on - strand
[10:41:27] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wMelPop_contig000014:86167..87459 on + strand
[10:41:27] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wMelPop_contig000014:121054..121389 on - strand
[10:41:27] Found 1139 CDS
[10:41:27] Connecting features back to sequences
[10:41:27] Option --gram not specified, will NOT check for signal peptides.
[10:41:27] Not using genus-specific database. Try --usegenus to enable it.
[10:41:27] Annotating CDS, please be patient.
[10:41:27] Will use 8 CPUs for similarity searching.
[10:41:28] There are still 1139 unannotated CDS left (started with 1139)
[10:41:28] Will use blast to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/kingdom/Bacteria/sprot with 8 CPUs
[10:41:28] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.faa | parallel --gnu -j 8 --block 21486 --recstart '>' --pipe blastp -query - -db /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.bls 2> /dev/null
[10:41:39] Modify product: Probable acyltransferase YihG => putative acyltransferase YihG
[10:41:39] Modify product: Cytochrome b561 homolog 2 => hypothetical protein
[10:41:39] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[10:41:39] Modify product: Uncharacterized oxidoreductase YciK => putative oxidoreductase YciK
[10:41:39] Modify product: Transcription termination/antitermination protein NusA => hypothetical protein
[10:41:39] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[10:41:39] Modify product: Probable tRNA-dihydrouridine synthase => putative tRNA-dihydrouridine synthase
[10:41:40] Modify product: SCO1 protein homolog => hypothetical protein
[10:41:40] Modify product: N utilization substance protein B homolog => hypothetical protein
[10:41:40] Modify product: Probable GTP-binding protein EngB => putative GTP-binding protein EngB
[10:41:40] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:40] Modify product: Probable peroxiredoxin => putative peroxiredoxin
[10:41:40] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:40] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:40] Modify product: Probable murein peptide carboxypeptidase => putative murein peptide carboxypeptidase
[10:41:40] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[10:41:40] Modify product: Actin-binding protein Smlt3054 => Actin-binding protein
[10:41:40] Modify product: Probable protein kinase UbiB => putative protein kinase UbiB
[10:41:40] Modify product: Co-chaperone protein HscB homolog => hypothetical protein
[10:41:40] Modify product: Transcription termination factor Rho => hypothetical protein
[10:41:40] Modify product: Probable glycerol-3-phosphate acyltransferase => putative glycerol-3-phosphate acyltransferase
[10:41:40] Modify product: Putative O-methyltransferase MSMEG_5073/MSMEI_4947 => Putative O-methyltransferase/MSMEI_4947
[10:41:40] Modify product: Stringent starvation protein A homolog => hypothetical protein
[10:41:40] Modify product: Uncharacterized metal-dependent hydrolase YcfH => putative metal-dependent hydrolase YcfH
[10:41:40] Modify product: Uncharacterized HIT-like protein HP_0404 => putative HIT-like protein
[10:41:40] Modify product: Uncharacterized ABC transporter ATP-binding protein TM_0288 => putative ABC transporter ATP-binding protein
[10:41:40] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[10:41:40] Modify product: Probable deoxyribonuclease RhsA => putative deoxyribonuclease RhsA
[10:41:40] Modify product: Probable phospholipid ABC transporter permease protein MlaE => putative phospholipid ABC transporter permease protein MlaE
[10:41:40] Modify product: Probable ribonucleotide transport ATP-binding protein mkl => putative ribonucleotide transport ATP-binding protein mkl
[10:41:40] Modify product: Probable transcriptional regulatory protein aq_1575 => putative transcriptional regulatory protein
[10:41:41] Cleaned 31 /product names
[10:41:41] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.faa
[10:41:41] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.bls
[10:41:41] There are still 520 unannotated CDS left (started with 1139)
[10:41:41] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/HAMAP.hmm with 8 CPUs
[10:41:41] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.faa | parallel --gnu -j 8 --block 7583 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/HAMAP.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.bls 2> /dev/null
[10:41:48] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.faa
[10:41:48] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.bls
[10:41:48] There are still 486 unannotated CDS left (started with 1139)
[10:41:48] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/CLUSTERS.hmm with 8 CPUs
[10:41:48] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.faa | parallel --gnu -j 8 --block 6861 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/CLUSTERS.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.bls 2> /dev/null
[10:42:09] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.faa
[10:42:09] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.bls
[10:42:09] There are still 456 unannotated CDS left (started with 1139)
[10:42:09] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/Pfam.hmm with 8 CPUs
[10:42:09] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.faa | parallel --gnu -j 8 --block 6382 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/Pfam.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/proteins\.bls 2> /dev/null
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Modify product: PAAR motif => PAAR motif protein
[10:42:31] Modify product: Piwi/Argonaute/Zwille siRNA-binding domain => Piwi/Argonaute/Zwille siRNA-binding domain protein
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: RDD family => RDD family protein
[10:42:31] Modify product: RDD family => RDD family protein
[10:42:31] Modify product: SURF1 family => SURF1 family protein
[10:42:31] Modify product: AhpC/TSA family => AhpC/TSA family protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[10:42:31] Modify product: Transposase IS66 family => Transposase IS66 family protein
[10:42:31] Modify product: EVE domain => EVE domain protein
[10:42:31] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[10:42:31] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:31] Modify product: Bacterial SH3 domain => Bacterial SH3 domain protein
[10:42:31] Modify product: KAP family P-loop domain => KAP family P-loop domain protein
[10:42:31] Modify product: Tim44-like domain => Tim44-like domain protein
[10:42:31] Modify product: YGGT family => YGGT family protein
[10:42:31] Modify product: Uracil DNA glycosylase superfamily => Uracil DNA glycosylase superfamily protein
[10:42:31] Modify product: ETC complex I subunit conserved region => hypothetical protein
[10:42:31] Modify product: Integrase core domain => Integrase core domain protein
[10:42:31] Modify product: Integral membrane protein TerC family => Integral membrane protein TerC family protein
[10:42:31] Modify product: Sodium:dicarboxylate symporter family => Sodium:dicarboxylate symporter family protein
[10:42:31] Modify product: Ulp1 protease family, C-terminal catalytic domain => hypothetical protein
[10:42:31] Modify product: Piwi/Argonaute/Zwille siRNA-binding domain => Piwi/Argonaute/Zwille siRNA-binding domain protein
[10:42:31] Modify product: Piwi/Argonaute/Zwille siRNA-binding domain => Piwi/Argonaute/Zwille siRNA-binding domain protein
[10:42:31] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:31] Modify product: COQ9 => hypothetical protein
[10:42:31] Modify product: PAS domain => PAS domain protein
[10:42:31] Modify product: Terminase-like family => Terminase-like family protein
[10:42:31] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[10:42:31] Modify product: Ankyrin repeat => Ankyrin repeat protein
[10:42:31] Modify product: RDD family => RDD family protein
[10:42:31] Modify product: RDD family => RDD family protein
[10:42:31] Modify product: SPFH domain / Band 7 family => SPFH domain / Band 7 family protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: Phage capsid family => Phage capsid family protein
[10:42:31] Modify product: Na+/H+ antiporter family => Na+/H+ antiporter family protein
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Modify product: MgtE intracellular N domain => MgtE intracellular N domain protein
[10:42:31] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:31] Modify product: Zinc-finger domain => Zinc-finger domain protein
[10:42:31] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:31] Cleaned 49 /product names
[10:42:31] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.faa
[10:42:31] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/proteins.bls
[10:42:31] Labelling remaining 316 proteins as 'hypothetical protein'
[10:42:31] Possible /pseudo 'TrbC/VIRB2 family protein' at gnl|Prokka|wMelPop_contig000013 position 139064
[10:42:31] Possible /pseudo 'TrbC/VIRB2 family protein' at gnl|Prokka|wMelPop_contig000013 position 139435
[10:42:31] Possible /pseudo 'Piwi/Argonaute/Zwille siRNA-binding domain protein' at gnl|Prokka|wMelPop_contig000013 position 212930
[10:42:31] Possible /pseudo 'Quaternary ammonium compound-resistance protein SugE' at gnl|Prokka|wMelPop_contig000013 position 267645
[10:42:31] Possible /pseudo 'Aminopyrimidine aminohydrolase' at gnl|Prokka|wMelPop_contig000013 position 302274
[10:42:31] Possible /pseudo 'Exopolysaccharide synthesis, ExoD' at gnl|Prokka|wMelPop_contig000013 position 313108
[10:42:31] Possible /pseudo 'Phage portal protein, lambda family' at gnl|Prokka|wMelPop_contig000013 position 426702
[10:42:31] Possible /pseudo 'Phage-related baseplate assembly protein' at gnl|Prokka|wMelPop_contig000013 position 434845
[10:42:31] Possible /pseudo 'Ankyrin repeats (3 copies)' at gnl|Prokka|wMelPop_contig000013 position 438734
[10:42:31] Possible /pseudo 'Ankyrin repeats (3 copies)' at gnl|Prokka|wMelPop_contig000013 position 443629
[10:42:31] Possible /pseudo 'putative zinc protease' at gnl|Prokka|wMelPop_contig000014 position 62968
[10:42:31] Possible /pseudo 'RDD family protein' at gnl|Prokka|wMelPop_contig000014 position 94478
[10:42:31] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wMelPop_contig000014 position 147412
[10:42:31] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wMelPop_contig000014 position 150387
[10:42:31] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wMelPop_contig000014 position 152784
[10:42:31] Possible /pseudo 'Amino-acid carrier protein AlsT' at gnl|Prokka|wMelPop_contig000015 position 55154
[10:42:31] Possible /pseudo 'Putative prophage major tail sheath protein' at gnl|Prokka|wMelPop_contig000017 position 31646
[10:42:31] Possible /pseudo 'L-allo-threonine aldolase' at gnl|Prokka|wMelPop_contig000017 position 75173
[10:42:31] Possible /pseudo 'anaerobic benzoate catabolism transcriptional regulator' at gnl|Prokka|wMelPop_contig000017 position 81223
[10:42:31] Found 567 unique /gene codes.
[10:42:31] Fixed 36 colliding /gene names.
[10:42:31] Adding /locus_tag identifiers
[10:42:31] Assigned 1175 locus_tags to CDS and RNA features.
[10:42:31] Writing outputs to /home/yquentin/work/wolbachia/prokka/wMelPop/
[10:42:32] Generating annotation statistics file
[10:42:32] Generating Genbank and Sequin files
[10:42:32] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.10 from http://www.vicbioinformatics.com' -Z \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/wMelPop\.err -i \/home\/yquentin\/work\/wolbachia\/prokka\/wMelPop\/wMelPop\.fsa 2> /dev/null
[10:42:35] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/errorsummary.val
[10:42:35] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.dr
[10:42:35] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.fixedproducts
[10:42:35] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.ecn
[10:42:35] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.val
[10:42:35] Output files:
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.err
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.sqn
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.tbl
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.log
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.ffn
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.gbk
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.fna
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.faa
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.gff
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.fsa
[10:42:35] /home/yquentin/work/wolbachia/prokka/wMelPop/wMelPop.txt
[10:42:35] Walltime used: 1.22 minutes
[10:42:35] If you use this result please cite the Prokka paper:
[10:42:35] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
[10:42:35] Type 'prokka --citation' for more details.
[10:42:35] Share and enjoy!