[10:41:27] Command: --force --outdir /home/yquentin/work/wolbachia/prokka/wNfe --addgenes --prefix wNfe --locustag wNfe --species Wolbachia endosymbiont --strain wNfe --compliant --quiet /home/yquentin/work/wolbachia/prokka/wNfe.fna
[10:41:27] Looking for 'aragorn' - found /usr/local/bioinfo/bin/aragorn
[10:41:27] Determined aragorn version is 1.2
[10:41:27] Looking for 'barrnap' - found /usr/local/bioinfo/bin/barrnap
[10:41:27] Determined barrnap version is 0.5
[10:41:27] Looking for 'blastp' - found /usr/local/bioinfo/src/NCBI_Blast+/ncbi-blast-2.6.0+/bin/blastp
[10:41:27] Determined blastp version is 2.6
[10:41:27] Looking for 'cmpress' - found /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../binaries/linux/cmpress
[10:41:27] Determined cmpress version is 1.1
[10:41:27] Looking for 'cmscan' - found /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../binaries/linux/cmscan
[10:41:27] Determined cmscan version is 1.1
[10:41:27] Looking for 'egrep' - found /bin/egrep
[10:41:27] Looking for 'find' - found /bin/find
[10:41:27] Looking for 'grep' - found /bin/grep
[10:41:27] Looking for 'hmmpress' - found /usr/local/bioinfo/bin/hmmpress
[10:41:27] Determined hmmpress version is 3.1
[10:41:27] Looking for 'hmmscan' - found /usr/local/bioinfo/bin/hmmscan
[10:41:27] Determined hmmscan version is 3.1
[10:41:27] Looking for 'less' - found /usr/bin/less
[10:41:27] Looking for 'makeblastdb' - found /usr/local/bioinfo/src/NCBI_Blast+/ncbi-blast-2.6.0+/bin/makeblastdb
[10:41:28] Determined makeblastdb version is 2.6
[10:41:28] Looking for 'minced' - found /usr/local/bioinfo/bin/minced
[10:41:28] Determined minced version is 1.6
[10:41:28] Looking for 'parallel' - found /usr/local/bioinfo/bin/parallel
[10:41:28] Determined parallel version is 20141022
[10:41:28] Looking for 'prodigal' - found /usr/local/bioinfo/bin/prodigal
[10:41:28] Determined prodigal version is 2.6
[10:41:28] Looking for 'rnammer' - found /usr/local/bioinfo/bin/rnammer
[10:41:28] Determined rnammer version is 1.2
[10:41:28] Looking for 'sed' - found /bin/sed
[10:41:28] Looking for 'signalp' - found /usr/local/bioinfo/bin/signalp
[10:41:28] Determined signalp version is 4.1
[10:41:28] Looking for 'tbl2asn' - found /home/yquentin/save/scripts/tbl2asn
[10:41:28] Determined tbl2asn version is 25.3
[10:41:28] Using genetic code table 11.
[10:41:28] Loading and checking input file: /home/yquentin/work/wolbachia/prokka/wNfe.fna
[10:41:28] Wrote 231 contigs
[10:41:28] Predicting tRNAs and tmRNAs
[10:41:28] Running: aragorn -gc11  -w \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/wNfe\.fna
[10:41:29] 1 tRNA-Asn [27528,27600] 33 (gtt)
[10:41:29] 1 tRNA-Val [1730,1803] 34 (gac)
[10:41:29] 1 tRNA-Met c[2412,2488] 35 (cat)
[10:41:29] 1 tRNA-Leu c[9171,9253] 35 (tag)
[10:41:29] 1 tRNA-Leu c[9384,9470] 35 (taa)
[10:41:29] 1 tRNA-Arg [5476,5553] 36 (acg)
[10:41:29] 1 tRNA-Leu [1758,1841] 34 (caa)
[10:41:29] 1 tmRNA* c[7289,7617] 194,238 ANDNFAAEGYRVAA*
[10:41:29] 1 tRNA-Cys c[4155,4227] 34 (gca)
[10:41:29] 1 tRNA-Val c[21985,22057] 34 (tac)
[10:41:29] 2 tRNA-Pro c[28438,28513] 36 (tgg)
[10:41:29] 1 tRNA-Asp c[5217,5290] 35 (gtc)
[10:41:29] 2 tRNA-Phe [11056,11129] 34 (gaa)
[10:41:29] 1 tRNA-Arg [1540,1616] 35 (cct)
[10:41:29] 1 tRNA-Ser [14297,14389] 36 (gct)
[10:41:29] 1 tRNA-His [5838,5913] 34 (gtg)
[10:41:29] 1 tRNA-Gly c[9063,9136] 34 (gcc)
[10:41:29] 1 tRNA-Ser c[6473,6558] 35 (cag)
[10:41:29] 1 tRNA-Arg c[8432,8506] 35 (ccg)
[10:41:29] 1 tRNA-Thr c[4872,4945] 34 (tgt)
[10:41:29] 1 tRNA-Thr [5208,5281] 34 (ggt)
[10:41:29] 1 tRNA-Glu [7112,7184] 34 (ttc)
[10:41:29] 1 tRNA-Lys c[7798,7871] 34 (ttt)
[10:41:29] 2 tRNA-Ala [8192,8267] 34 (tgc)
[10:41:29] 1 tRNA-Leu c[16940,17027] 35 (gag)
[10:41:29] 1 tRNA-Met c[17165,17238] 34 (cat)
[10:41:29] Found 26 tRNAs
[10:41:29] Predicting Ribosomal RNAs
[10:41:29] Running Barrnap with 8 threads
[10:41:30] 1 gnl|Prokka|wNfe_contig000163 4676 5S ribosomal RNA
[10:41:30] 2 gnl|Prokka|wNfe_contig000163 4851 23S ribosomal RNA
[10:41:30] 3 gnl|Prokka|wNfe_contig000205 965 16S ribosomal RNA
[10:41:30] Found 3 rRNAs
[10:41:30] Skipping ncRNA search, enable with --rfam if desired.
[10:41:30] Total of 28 tRNA + rRNA features
[10:41:30] Searching for CRISPR repeats
[10:41:30] Found 0 CRISPRs
[10:41:30] Predicting coding sequences
[10:41:30] Contigs total 1337641 bp, so using single mode
[10:41:30] Running: prodigal -i \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/wNfe\.fna -c -m -g 11 -p single -f sco -q
[10:41:31] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wNfe_contig000074:9089..9247 on - strand
[10:41:31] Excluding CDS which overlaps existing RNA (rRNA) at gnl|Prokka|wNfe_contig000205:1401..1523 on + strand
[10:41:31] Excluding CDS which overlaps existing RNA (rRNA) at gnl|Prokka|wNfe_contig000205:2112..2363 on + strand
[10:41:31] Excluding CDS which overlaps existing RNA (tRNA) at gnl|Prokka|wNfe_contig000221:17238..18530 on - strand
[10:41:31] Found 1264 CDS
[10:41:31] Connecting features back to sequences
[10:41:31] Option --gram not specified, will NOT check for signal peptides.
[10:41:31] Not using genus-specific database. Try --usegenus to enable it.
[10:41:31] Annotating CDS, please be patient.
[10:41:31] Will use 8 CPUs for similarity searching.
[10:41:32] There are still 1264 unannotated CDS left (started with 1264)
[10:41:32] Will use blast to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/kingdom/Bacteria/sprot with 8 CPUs
[10:41:32] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.faa | parallel --gnu -j 8 --block 23081 --recstart '>' --pipe blastp -query - -db /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/kingdom/Bacteria/sprot -evalue 1e-06 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.bls 2> /dev/null
[10:41:44] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:44] Modify product: Probable glycerol-3-phosphate acyltransferase => putative glycerol-3-phosphate acyltransferase
[10:41:44] Modify product: Putative O-methyltransferase MSMEG_5073/MSMEI_4947 => Putative O-methyltransferase/MSMEI_4947
[10:41:44] Modify product: Stringent starvation protein A homolog => hypothetical protein
[10:41:45] Modify product: Actin-binding protein Smlt3054 => Actin-binding protein
[10:41:45] Modify product: Transcription termination/antitermination protein NusG => hypothetical protein
[10:41:45] Modify product: Probable tRNA-dihydrouridine synthase => putative tRNA-dihydrouridine synthase
[10:41:45] Modify product: Uncharacterized oxidoreductase YciK => putative oxidoreductase YciK
[10:41:45] Modify product: Probable murein peptide carboxypeptidase => putative murein peptide carboxypeptidase
[10:41:45] Modify product: Probable phospholipid ABC transporter-binding protein MlaD => putative phospholipid ABC transporter-binding protein MlaD
[10:41:45] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[10:41:45] Modify product: Probable GTP-binding protein EngB => putative GTP-binding protein EngB
[10:41:45] Modify product: N utilization substance protein B homolog => hypothetical protein
[10:41:45] Modify product: Uncharacterized ABC transporter ATP-binding protein TM_0288 => putative ABC transporter ATP-binding protein
[10:41:45] Modify product: Putative multidrug export ATP-binding/permease protein SAV1866 => Putative multidrug export ATP-binding/permease protein
[10:41:45] Modify product: Cytochrome b561 homolog 2 => hypothetical protein
[10:41:45] Modify product: Uncharacterized ABC transporter ATP-binding protein TM_0288 => putative ABC transporter ATP-binding protein
[10:41:45] Modify product: Probable protein kinase UbiB => putative protein kinase UbiB
[10:41:45] Modify product: Actin-binding protein Smlt3054 => Actin-binding protein
[10:41:45] Modify product: Probable peroxiredoxin => putative peroxiredoxin
[10:41:45] Modify product: Probable transcriptional regulatory protein aq_1575 => putative transcriptional regulatory protein
[10:41:45] Modify product: Probable deoxyribonuclease RhsA => putative deoxyribonuclease RhsA
[10:41:45] Modify product: SCO1 protein homolog => hypothetical protein
[10:41:45] Modify product: Bifunctional protein FolD => Bifunctional protein FolD protein
[10:41:45] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:45] Modify product: Uncharacterized zinc protease Rv2782c => putative zinc protease
[10:41:45] Modify product: Probable acyltransferase YihG => putative acyltransferase YihG
[10:41:45] Modify product: Probable chromosome-partitioning protein ParB => putative chromosome-partitioning protein ParB
[10:41:45] Modify product: Co-chaperone protein HscB homolog => hypothetical protein
[10:41:45] Modify product: Transcription termination factor Rho => hypothetical protein
[10:41:45] Modify product: Probable phospholipid ABC transporter permease protein MlaE => putative phospholipid ABC transporter permease protein MlaE
[10:41:45] Modify product: Probable ribonucleotide transport ATP-binding protein mkl => putative ribonucleotide transport ATP-binding protein mkl
[10:41:46] Modify product: Actin-binding protein Smlt3054 => Actin-binding protein
[10:41:46] Modify product: Transcription termination/antitermination protein NusA => hypothetical protein
[10:41:46] Modify product: Uncharacterized HIT-like protein HP_0404 => putative HIT-like protein
[10:41:46] Modify product: Uncharacterized metal-dependent hydrolase YcfH => putative metal-dependent hydrolase YcfH
[10:41:46] Cleaned 36 /product names
[10:41:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.faa
[10:41:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.bls
[10:41:46] There are still 618 unannotated CDS left (started with 1264)
[10:41:46] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/HAMAP.hmm with 8 CPUs
[10:41:46] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.faa | parallel --gnu -j 8 --block 8719 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/HAMAP.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.bls 2> /dev/null
[10:41:54] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.faa
[10:41:54] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.bls
[10:41:54] There are still 584 unannotated CDS left (started with 1264)
[10:41:54] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/CLUSTERS.hmm with 8 CPUs
[10:41:54] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.faa | parallel --gnu -j 8 --block 8015 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/CLUSTERS.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.bls 2> /dev/null
[10:42:17] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.faa
[10:42:17] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.bls
[10:42:17] There are still 552 unannotated CDS left (started with 1264)
[10:42:17] Will use hmmer3 to search against /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/Pfam.hmm with 8 CPUs
[10:42:17] Running: cat \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.faa | parallel --gnu -j 8 --block 7504 --recstart '>' --pipe hmmscan --noali --notextw --acc -E 1e-06 --cpu 1 /usr/local/bioinfo/src/PROKKA/prokka-1.10/bin/../db/hmm/Pfam.hmm /dev/stdin > \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/proteins\.bls 2> /dev/null
[10:42:41] Modify product: COQ9 => hypothetical protein
[10:42:41] Modify product: PAS domain => PAS domain protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: Terminase-like family => Terminase-like family protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: KAP family P-loop domain => KAP family P-loop domain protein
[10:42:41] Modify product: Bacterial SH3 domain => Bacterial SH3 domain protein
[10:42:41] Modify product: RDD family => RDD family protein
[10:42:41] Modify product: SURF1 family => SURF1 family protein
[10:42:41] Modify product: Uracil DNA glycosylase superfamily => Uracil DNA glycosylase superfamily protein
[10:42:41] Modify product: Acetyltransferase (GNAT) family => Acetyltransferase (GNAT) family protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: RDD family => RDD family protein
[10:42:41] Modify product: Piwi/Argonaute/Zwille siRNA-binding domain => Piwi/Argonaute/Zwille siRNA-binding domain protein
[10:42:41] Modify product: Phage capsid family => Phage capsid family protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Piwi/Argonaute/Zwille siRNA-binding domain => Piwi/Argonaute/Zwille siRNA-binding domain protein
[10:42:41] Modify product: Na+/H+ antiporter family => Na+/H+ antiporter family protein
[10:42:41] Modify product: HemY protein N-terminus => hypothetical protein
[10:42:41] Modify product: Integral membrane protein TerC family => Integral membrane protein TerC family protein
[10:42:41] Modify product: Terminase-like family => Terminase-like family protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: Integrase core domain => Integrase core domain protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: Transposase IS66 family => Transposase IS66 family protein
[10:42:41] Modify product: Alpha/beta hydrolase family => Alpha/beta hydrolase family protein
[10:42:41] Modify product: Zinc-finger domain => Zinc-finger domain protein
[10:42:41] Modify product: EVE domain => EVE domain protein
[10:42:41] Modify product: Ankyrin repeat => Ankyrin repeat protein
[10:42:41] Modify product: Ulp1 protease family, C-terminal catalytic domain => hypothetical protein
[10:42:41] Modify product: Resolvase, N terminal domain => hypothetical protein
[10:42:41] Modify product: Integrase core domain => Integrase core domain protein
[10:42:41] Modify product: Ankyrin repeat => Ankyrin repeat protein
[10:42:41] Modify product: Ankyrin repeat => Ankyrin repeat protein
[10:42:41] Modify product: SPFH domain / Band 7 family => SPFH domain / Band 7 family protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Sodium:dicarboxylate symporter family => Sodium:dicarboxylate symporter family protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Integrase core domain => Integrase core domain protein
[10:42:41] Modify product: ETC complex I subunit conserved region => hypothetical protein
[10:42:41] Modify product: Transposase IS116/IS110/IS902 family => Transposase IS116/IS110/IS902 family protein
[10:42:41] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[10:42:41] Modify product: Major Facilitator Superfamily => Major Facilitator Superfamily protein
[10:42:41] Modify product: Tim44-like domain => Tim44-like domain protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Modify product: Ankyrin repeat => Ankyrin repeat protein
[10:42:41] Modify product: PAAR motif => PAAR motif protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: MgtE intracellular N domain => MgtE intracellular N domain protein
[10:42:41] Modify product: RDD family => RDD family protein
[10:42:41] Modify product: RDD family => RDD family protein
[10:42:41] Modify product: DnaJ domain => DnaJ domain protein
[10:42:41] Modify product: Tetratricopeptide repeat => Tetratricopeptide repeat protein
[10:42:41] Modify product: TrbC/VIRB2 family => TrbC/VIRB2 family protein
[10:42:41] Modify product: Transposase DDE domain => Transposase DDE domain protein
[10:42:41] Cleaned 61 /product names
[10:42:41] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.faa
[10:42:41] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/proteins.bls
[10:42:41] Labelling remaining 373 proteins as 'hypothetical protein'
[10:42:41] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wNfe_contig000001 position 7819
[10:42:41] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wNfe_contig000001 position 10839
[10:42:41] Possible /pseudo 'TrbL/VirB6 plasmid conjugal transfer protein' at gnl|Prokka|wNfe_contig000001 position 13251
[10:42:41] Possible /pseudo 'Putative prophage major tail sheath protein' at gnl|Prokka|wNfe_contig000002 position 16979
[10:42:41] Possible /pseudo 'Transposase, Mutator family' at gnl|Prokka|wNfe_contig000018 position 1897
[10:42:41] Possible /pseudo 'Transposase, Mutator family' at gnl|Prokka|wNfe_contig000018 position 2076
[10:42:41] Possible /pseudo 'Amino-acid carrier protein AlsT' at gnl|Prokka|wNfe_contig000026 position 6802
[10:42:41] Possible /pseudo 'Ankyrin repeat protein' at gnl|Prokka|wNfe_contig000050 position 1484
[10:42:41] Possible /pseudo 'Quaternary ammonium compound-resistance protein SugE' at gnl|Prokka|wNfe_contig000051 position 550
[10:42:41] Possible /pseudo 'Modification methylase PvuII' at gnl|Prokka|wNfe_contig000072 position 551
[10:42:41] Possible /pseudo 'L-allo-threonine aldolase' at gnl|Prokka|wNfe_contig000115 position 10308
[10:42:41] Possible /pseudo 'Aminopyrimidine aminohydrolase' at gnl|Prokka|wNfe_contig000157 position 25887
[10:42:41] Possible /pseudo 'Putative prophage major tail sheath protein' at gnl|Prokka|wNfe_contig000159 position 3693
[10:42:41] Possible /pseudo 'anaerobic benzoate catabolism transcriptional regulator' at gnl|Prokka|wNfe_contig000164 position 6805
[10:42:41] Possible /pseudo 'Phage portal protein' at gnl|Prokka|wNfe_contig000165 position 1212
[10:42:41] Possible /pseudo 'Exopolysaccharide synthesis, ExoD' at gnl|Prokka|wNfe_contig000187 position 592
[10:42:41] Possible /pseudo 'PD-(D/E)XK nuclease family transposase' at gnl|Prokka|wNfe_contig000218 position 5114
[10:42:41] Possible /pseudo 'anaerobic benzoate catabolism transcriptional regulator' at gnl|Prokka|wNfe_contig000219 position 4064
[10:42:41] Possible /pseudo 'Chaperone SurA' at gnl|Prokka|wNfe_contig000221 position 6538
[10:42:41] Possible /pseudo 'RDD family protein' at gnl|Prokka|wNfe_contig000221 position 10160
[10:42:41] Found 574 unique /gene codes.
[10:42:41] Fixed 37 colliding /gene names.
[10:42:41] Adding /locus_tag identifiers
[10:42:41] Assigned 1293 locus_tags to CDS and RNA features.
[10:42:41] Writing outputs to /home/yquentin/work/wolbachia/prokka/wNfe/
[10:42:43] Generating annotation statistics file
[10:42:43] Generating Genbank and Sequin files
[10:42:43] Running: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.10 from http://www.vicbioinformatics.com' -Z \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/wNfe\.err -i \/home\/yquentin\/work\/wolbachia\/prokka\/wNfe\/wNfe\.fsa 2> /dev/null
[10:42:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/errorsummary.val
[10:42:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.dr
[10:42:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.fixedproducts
[10:42:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.ecn
[10:42:46] Deleting unwanted file: /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.val
[10:42:46] Output files:
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.sqn
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.fna
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.gbk
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.err
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.ffn
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.txt
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.fsa
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.tbl
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.faa
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.gff
[10:42:46] /home/yquentin/work/wolbachia/prokka/wNfe/wNfe.log
[10:42:46] Walltime used: 1.32 minutes
[10:42:46] If you use this result please cite the Prokka paper:
[10:42:46] Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics. 30(14):2068-9.
[10:42:46] Type 'prokka --citation' for more details.
[10:42:46] Share and enjoy!