Index of /~formation/M2_Phylogenomique/scripts

[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[ ]MCL_OG_paralogy.R27-Sep-2018 15:41 2.2K 
[ ]MCL_OG_size.R05-Oct-2018 13:53 1.3K 
[ ]MCL_partition_inflate.R27-Sep-2018 15:30 3.0K 
[ ]Mash_dist_allpairs.sh19-Oct-2018 09:12 710  
[ ]Mash_sketch.sh19-Oct-2018 09:12 334  
[ ]RunSLURM_ANI.csh24-Sep-2020 14:51 525  
[ ]RunSLURM_Mauve_6GProchlo.csh06-Oct-2020 18:38 718  
[ ]RunSLURM_PMauve_6GProchlo.csh24-Sep-2020 10:47 539  
[ ]RunSLURM_PMauve_12GProchlo.csh06-Oct-2020 18:37 645  
[TXT]_trim.aln_trim.txt09-Oct-2018 09:50 0  
[ ]aa_to_dna_aln.pl15-Nov-2023 17:18 3.6K 
[ ]aa_to_dna_aln_loop.pl05-Oct-2018 16:06 4.6K 
[ ]blastn_genome_pair.pl27-Sep-2018 10:26 3.0K 
[ ]blastp_inter.pl08-Oct-2018 12:02 2.8K 
[ ]blastp_intra.pl09-Oct-2018 15:23 2.5K 
[ ]cat_blast_resutls.pl11-Sep-2018 16:29 2.8K 
[ ]concat_aligments.pl16-Nov-2023 11:09 5.9K 
[ ]essai.R17-Sep-2018 18:19 2.7K 
[ ]extract_sequences_from_list.pl23-Oct-2019 09:23 3.1K 
[ ]extract_sequences_from_matchtable.pl15-Nov-2023 16:54 3.5K 
[ ]fetch_eggNoG.pl14-Nov-2023 16:46 2.1K 
[ ]gc_freq.pl26-Oct-2018 14:34 1.8K 
[ ]genbank2dna.pl10-Sep-2018 10:29 5.0K 
[ ]genoplot_OG_links.R27-Sep-2018 12:32 11K 
[ ]genoplot_blastn_links.R05-Oct-2018 13:49 2.4K 
[ ]index_eggNoG.pl14-Nov-2023 16:46 1.6K 
[ ]index_fasta.pl05-Oct-2018 10:26 3.4K 
[ ]muscle_loop.pl05-Oct-2018 11:08 4.2K 
[ ]myscript.sh24-Sep-2020 14:22 353  
[ ]new_genes_plot.R05-Oct-2018 13:53 1.4K 
[ ]pan_core_plot.R05-Oct-2018 13:53 1.9K 
[ ]panoct_P.csh24-Sep-2020 14:13 679  
[ ]panoct_PS.csh24-Sep-2020 14:05 695  
[ ]parse_mcl.pl17-Sep-2018 18:19 1.8K 
[ ]prokka_loop.pl22-Sep-2020 14:17 4.6K 
[ ]prokkagff2panoct.pl27-Sep-2018 16:31 3.9K 
[ ]retrieve_ncbi_entries_list.pl10-Oct-2018 09:58 16K 
[ ]rnammer_loop.pl04-Oct-2018 17:51 3.7K 
[ ]short_PorthoMCL.sh26-Sep-2018 16:53 6.3K 
[TXT]species_strain_names.txt08-Oct-2018 11:40 779  
[ ]trimal_conservation.pl05-Oct-2018 17:13 2.7K 
[ ]trimal_selection.pl24-Oct-2018 10:44 4.5K