#Variable a charger
# slurm
export
DRMAA_LIBRARY_PATH=/tools/libraries/slurm-drmaa/slurm-drmaa-1.0.7/lib/libdrmaa.so

sur genotoul
#sge
export DRMAA_LIBRARY_PATH=/SGE/ogs/lib/linux-x64/libdrmaa.so


#lancement sur le cluster avec dmraa
snakemake -s Snakefile_join  --cluster-config resources_SLURM.yaml --drmaa --jobs 32 --rerun-incomplete


#lancement sur le cluster avec cluster
snakemake -s Snakefile --jobs 99 \
           --configfile config.yaml \
           --cluster-config resources_SLURM.yaml \
           --cluster "sbatch -p unlimitq --cpus-per-task={cluster.cpus} --time={cluster.time} --mem-per-cpu={cluster.mem} -e SLURM_out/%x.err -o SLURM_out/%x.out" \
           --printshellcmds --latency-wait 30



resources_SLURM.yaml
__default__:
    mem: "1G"
    cpus: 1
    time: 01:00:00

bwa_map:
    cpus: 8