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Alignment Text XML ASN.1 JSON Seq-align Hit Table(text) Hit Table(csv) Multiple-file XML2 Single-file XML2 Multiple-file JSON Single-file JSON SAM	Search Strategies ASN.1	PSSM to restart search PSSM	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at https://www.ncbi.nlm.nih.gov/books/NBK153387/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1". Alignment written out in Abstract Syntax Notation 1.
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5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.
6). "XML2". New XML format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
7). "JSON". New JSON format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
8). "SAM". Sequence Alignment Map format.

XML2 and JSON can be downloaded either as one file per query (multiple-file) or one file for all queries (single-file). These formats are listed as Multiple-file XML2 (and JSON) or Single-file XML (and JSON).

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see https://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

Job title: AF171223:Oryza sativa putative zinc finger...

RID: HFCR187K01R (Expires on 09-08 04:51 am)

Query ID: AF171223.1; AF171223.1
Description: Oryza sativa putative zinc finger protein mRNA, complete cds.
Molecule type: rna
Query Length: 834


Database Name: est
Description: Database of GenBank+EMBL+DDBJ sequences from EST Divisions See details
Program: BLASTN 2.13.0+ Citation

Other reports: Search Summary [Distance tree of results]

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Aug 23, 2022 9:06 PM
Number of letters	604,074,311
Number of sequences	1,254,778
Entrez query	Includes: rice (taxid:4530) Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	28
Effective length of query	806
Effective length of database	568940527
Effective search space	458566064762
Effective search space used	458566064762

Descriptions

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:

Select:All None Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max Score	Total Score	Query Cover	E value	Per. Ident	Accession
1Select seq CT850081.1	CT850081 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cDNA clone OSIGCEA011C15, mRNA sequence	1371	1371	99%	0.0	96.42%	CT850081.1
2Select seq AU077984.1	AU077984 Rice callus Oryza sativa Japonica Group cDNA clone C62969_6Z, mRNA sequence	1170	1170	78%	0.0	98.93%	AU077984.1
3Select seq CX115376.1	EI098K16 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI098K16 5', mRNA sequence	1125	1125	81%	0.0	96.90%	CX115376.1
4Select seq CK082509.1	82533rsicen_25441.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence	1123	1123	73%	0.0	99.84%	CK082509.1
5Select seq CF297208.1	30DGS--07-O11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--07-O11, mRNA sequence	1090	1090	72%	0.0	99.01%	CF297208.1
6Select seq CF297280.1	30DGS--08-A11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--08-A11, mRNA sequence	1085	1085	71%	0.0	99.33%	CF297280.1
7Select seq CX100163.1	RECm0988 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI070K04, BI076P19, EI088E11 5', mRNA sequence	1038	1038	75%	0.0	96.37%	CX100163.1
8Select seq CF960612.1	11339rsiced_2753.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence	965	965	63%	0.0	99.62%	CF960612.1
9Select seq CR282938.1	CR282938 Oryza sativa library (Han B) Oryza sativa cDNA clone y764e09p5, mRNA sequence	939	939	65%	0.0	97.46%	CR282938.1
10Select seq CI027777.1	CI027777 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group cDNA clone 009-M044R-D11 3', mRNA sequence	893	893	59%	0.0	99.00%	CI027777.1
11Select seq CI317917.1	CI317917 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone J01B3041J10M3 3', mRNA sequence	885	885	60%	0.0	98.23%	CI317917.1
12Select seq AU223288.1	AU223288 Rice shoot Oryza sativa Japonica Group cDNA clone S5671, mRNA sequence	852	852	56%	0.0	99.36%	AU223288.1
13Select seq CI040304.1	CI040304 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group cDNA clone 009-M192R-G04 3', mRNA sequence	830	830	55%	0.0	98.72%	CI040304.1
14Select seq C97778.1	C97778 Rice callus Oryza sativa Japonica Group cDNA clone C62780_6Z, mRNA sequence	826	826	55%	0.0	98.50%	C97778.1
15Select seq CF297209.1	30DGS--07-O11.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--07-O11, mRNA sequence	809	809	55%	0.0	98.28%	CF297209.1
16Select seq AU078066.1	AU078066 Rice shoot Oryza sativa Japonica Group cDNA clone S2957_8Z, mRNA sequence	793	793	54%	0.0	97.83%	AU078066.1
17Select seq AU223174.1	AU223174 Rice shoot Oryza sativa Japonica Group cDNA clone S4358, mRNA sequence	776	776	51%	0.0	98.85%	AU223174.1
18Select seq CX116161.1	EI102N10 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI102N10 5', mRNA sequence	771	771	82%	0.0	87.97%	CX116161.1
19Select seq CF196200.1	Azvi1.4_B02 AZ-VI Oryza sativa Japonica Group cDNA clone AZ-VI1.4B02 5', mRNA sequence	767	767	53%	0.0	96.85%	CF196200.1
20Select seq CF338176.1	JMT--08-O21.g1 AtJMT-overexpressing transgenic rice plasmid cDNA library (JMT) Oryza sativa Japonica Group cDNA clone JMT--08-O21, mRNA sequence	756	756	53%	0.0	96.93%	CF338176.1
21Select seq CR282926.1	CR282926 Oryza sativa library (Han B) Oryza sativa cDNA clone y764e09p3, mRNA sequence	754	754	53%	0.0	96.92%	CR282926.1
22Select seq CI463070.1	CI463070 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa Japonica Group cDNA clone J07B5067O16M3 3', mRNA sequence	747	747	49%	0.0	99.03%	CI463070.1
23Select seq CF196231.1	Azvi1.4_H10 AZ-VI Oryza sativa Japonica Group cDNA clone AZ-VI1.4H10 5', mRNA sequence	741	741	49%	0.0	99.03%	CF196231.1
24Select seq CF295850.1	30DGS--05-P12.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--05-P12, mRNA sequence	737	1054	71%	0.0	98.57%	CF295850.1
25Select seq CI336137.1	CI336137 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone J01B3154B21M3 3', mRNA sequence	732	732	52%	0.0	97.01%	CI336137.1
26Select seq D41648.1	RICS4289A Rice shoot Oryza sativa Japonica Group cDNA, mRNA sequence	719	719	47%	0.0	99.49%	D41648.1
27Select seq CF993576.1	20563rsicee_2336.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence	715	715	48%	0.0	98.76%	CF993576.1
28Select seq CI486814.1	CI486814 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa Japonica Group cDNA clone J07B5176H03M3 3', mRNA sequence	708	708	46%	0.0	99.48%	CI486814.1
29Select seq CI485207.1	CI485207 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa Japonica Group cDNA clone J07B5167F20M3 3', mRNA sequence	706	706	46%	0.0	99.74%	CI485207.1
30Select seq CI015025.1	CI015025 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group cDNA clone 006-M103R-E07 3', mRNA sequence	676	676	44%	0.0	99.20%	CI015025.1
31Select seq AU078059.1	AU078059 Rice green shoot Oryza sativa Japonica Group cDNA clone S12677_10Z, mRNA sequence	662	662	50%	0.0	94.14%	AU078059.1
32Select seq CI295555.1	CI295555 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group cDNA clone 009-M044F-D11 5', mRNA sequence	660	660	43%	0.0	99.72%	CI295555.1
33Select seq CF965589.1	13814rsiced_15508.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence	649	649	42%	0.0	99.44%	CF965589.1
34Select seq CI589372.1	CI589372 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone J02B3029I22T3 5', mRNA sequence	641	641	41%	0.0	99.71%	CI589372.1
35Select seq CI582845.1	CI582845 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone J01B3154B21T3 5', mRNA sequence	641	641	41%	0.0	99.71%	CI582845.1
36Select seq AU066216.1	AU066216 Rice shoot Oryza sativa Japonica Group cDNA clone S5671_1A, mRNA sequence	632	632	44%	2e-179	97.30%	AU066216.1
37Select seq AU078057.1	AU078057 Rice green shoot Oryza sativa Japonica Group cDNA clone S11004_7A, mRNA sequence	630	630	41%	6e-179	99.71%	AU078057.1
38Select seq AU078067.1	AU078067 Rice shoot Oryza sativa Japonica Group cDNA clone S3525_8Z, mRNA sequence	623	623	43%	1e-176	97.55%	AU078067.1
39Select seq CF295851.1	30DGS--05-P12.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--05-P12, mRNA sequence	610	968	64%	8e-173	98.83%	CF295851.1
40Select seq AU066162.1	AU066162 Rice shoot Oryza sativa Japonica Group cDNA clone S5310_1A, mRNA sequence	608	608	42%	3e-172	96.96%	AU066162.1
41Select seq AU078058.1	AU078058 Rice green shoot Oryza sativa Japonica Group cDNA clone S11004_8Z, mRNA sequence	603	603	40%	1e-170	97.96%	AU078058.1
42Select seq D47359.1	RICS12677A Rice green shoot Oryza sativa Japonica Group cDNA, mRNA sequence	595	595	39%	2e-168	99.39%	D47359.1
43Select seq D41196.1	RICS3525A Rice shoot Oryza sativa Japonica Group cDNA, mRNA sequence	540	540	35%	1e-151	99.01%	D41196.1
44Select seq D40803.1	RICS2957A Rice shoot Oryza sativa Japonica Group cDNA, mRNA sequence	521	521	35%	4e-146	97.68%	D40803.1
45Select seq D40571.1	RICS2639A Rice shoot Oryza sativa Japonica Group cDNA, mRNA sequence	475	475	31%	3e-132	99.24%	D40571.1
46Select seq CI292888.1	CI292888 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group cDNA clone 006-M103F-E07 5', mRNA sequence	466	466	30%	2e-129	99.61%	CI292888.1
47Select seq D41693.1	RICS4358A Rice shoot Oryza sativa Japonica Group cDNA, mRNA sequence	464	464	32%	7e-129	97.41%	D41693.1
48Select seq AU078068.1	AU078068 Rice shoot Oryza sativa Japonica Group cDNA clone S4289_8Z, mRNA sequence	385	385	35%	5e-105	88.92%	AU078068.1
49Select seq AU063584.2	AU063584 Rice callus Oryza sativa Japonica Group cDNA clone C62969_5A, mRNA sequence	126	126	8%	4e-27	100.00%	AU063584.2
50Select seq AU078064.1	AU078064 Rice shoot Oryza sativa Japonica Group cDNA clone S2639_22Z, mRNA sequence	119	119	24%	6e-25	78.46%	AU078064.1

Alignments

Download GenBank Graphics Next Previous Descriptions

CT850081 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cDNA clone OSIGCEA011C15, mRNA sequence

Sequence ID: CT850081.1Length: 1199Number of Matches: 1

Range 1: 51 to 887GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
1371 bits(742)	0.0()	808/838(96%)	11/838(1%)	Plus/Plus

Query  1    CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  51   CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  110

Query  61   CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  170

Query  121  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  230

Query  181  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  240
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  231  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  290

Query  241  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  350

Query  301  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  410

Query  361  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  411  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  470

Query  421  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  530

Query  481  GAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  531  GAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGA  590

Query  541  GCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  GCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCA  650

Query  601  GAAACTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACT  660
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  651  GAAACTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAATGTTACTACT  710

Query  661  GCAT-GGTTGCAAGGGTGGTAGAAGTACCTT-AGCTTCCAAGA-TCGTTGTAATGTGTGA  717
            |||| |||||||||||||||||||||| ||| ||||||||||| ||||| ||||| | ||
Sbjct  711  GCATGGGTTGCAAGGGTGGTAGAAGTAACTTTAGCTTCCAAGAATCGTT-TAATGGGGGA  769

Query  718  GTTTAATTTTGGCGTTTTAAGTAATAAGTCT-AGTGATTGCAGGATTGTA-CGGGGTAAT  775
            |||||||||||||| ||||| ||| |||||| || |||||||||| |||| ||||| || 
Sbjct  770  GTTTAATTTTGGCGGTTTAAATAAAAAGTCTAAGGGATTGCAGGAATGTAACGGGGAAAA  829

Query  776  GT-ACTTGCATTATCCATT-ATAATC-TTAAGCATCC-AATATAATT-ATGCaaaaaa  828
            |  |||||| || ||| || | |||| |||| ||||| ||| ||||| ||||||||||
Sbjct  830  GGGACTTGCTTTTTCCTTTTAAAATCCTTAAACATCCCAATTTAATTTATGCAAAAAA  887

Download GenBank Graphics Next Previous Descriptions

AU077984 Rice callus Oryza sativa Japonica Group cDNA clone C62969_6Z, mRNA sequence

Sequence ID: AU077984.1Length: 689Number of Matches: 1

Range 1: 4 to 659GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
1170 bits(633)	0.0()	649/656(99%)	3/656(0%)	Plus/Plus

Query  172  CCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGC-TGTCCTCCCTGGACATTCGCCC-GG  229
            |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct  4    CCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTTGACCTCCCTGGACATTCGCCCGGG  63

Query  230  GCGACTGGTACTGCAACTGC-GGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAA  288
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  64   GCGACTGGTACTGCAACTGCGGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAA  123

Query  289  TGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGAC  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  124  TGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGAC  183

Query  349  TTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATT  408
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  184  TTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGGATT  243

Query  409  TGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGC  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  TGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGC  303

Query  469  AATGCACCTAGGGAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGT  528
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  304  AATGCACCTAGGGAAGCAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGT  363

Query  529  GAGACGTGACGAGCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACA  588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  GAGACGTGACGAGCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACA  423

Query  589  GGCTGCGATCCAGAAACTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTA  648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  424  GGCTGCGATCCAGAAACTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTA  483

Query  649  AGTGTTACTACTGCATGGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  484  AGTGTTACTACTGCATGGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGT  543

Query  709  AATGTGTGAGTTTAATTTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACG  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  544  AATGTGTGAGTTTAATTTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACG  603

Query  769  GGGTAATGTACTTGCATTATCCATTATAATCTTAAGCATCCAATATAATTATGCaa  824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  604  GGGTAATGTACTTGCATTATCCATTATAATCTTAAGCATCCAATATAATTATGCAA  659

Download GenBank Graphics Next Previous Descriptions

EI098K16 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI098K16 5', mRNA sequence

Sequence ID: CX115376.1Length: 965Number of Matches: 1

Range 1: 77 to 743GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
1125 bits(609)	0.0()	656/677(97%)	10/677(1%)	Plus/Plus

Query  1    CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  136

Query  61   CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  196

Query  121  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  197  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  256

Query  181  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  240
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  257  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  316

Query  241  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  317  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  376

Query  301  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  436

Query  361  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  420
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  437  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGGATTTGCACAAGGCCT  496

Query  421  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  497  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  556

Query  481  GAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGA  540
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  557  GAAGCAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGA  616

Query  541  GCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCA  600
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  617  GCTGGGCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACTTTCACAGGCTGCGATCCA  676

Query  601  GAAACTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACT  660
            ||| |||||| ||||||||||| |||||||| |||| ||| || |  |||||| ||| ||
Sbjct  677  GAA-CTATGG-TGGGACTATGT-GTAACGTGGTGAT-TATAATGG--AAGTGT-ACT-CT  728

Query  661  GCATGGTTGCAAGGGTG  677
            || || ||||  |||||
Sbjct  729  GCTTG-TTGCC-GGGTG  743

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82533rsicen_25441.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence

Sequence ID: CK082509.1Length: 644Number of Matches: 1

Range 1: 34 to 644GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
1123 bits(608)	0.0()	610/611(99%)	0/611(0%)	Plus/Plus

Query  1    CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  34   CCTAGTACTAAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGGGCTTAACTG  93

Query  61   CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  153

Query  121  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  213

Query  181  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  240
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  214  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  273

Query  241  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  333

Query  301  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  393

Query  361  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  394  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  453

Query  421  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  454  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  513

Query  481  GAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  GAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGA  573

Query  541  GCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  574  GCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCA  633

Query  601  GAAACTATGGA  611
            |||||||||||
Sbjct  634  GAAACTATGGA  644

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30DGS--07-O11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA clone 30DGS--07-O11, mRNA sequence

Sequence ID: CF297208.1Length: 633Number of Matches: 1

Range 1: 25 to 633GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
1090 bits(590)	0.0()	603/609(99%)	1/609(0%)	Plus/Minus

Query  220  ATTCGCCCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGC  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  633  ATTCGCCCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGC  574

Query  280  TGCTTCAAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCC  339
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  573  TGCTTCAAATGTGGCGCCACTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCC  514

Query  340  AACGGTGACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGT  399
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  513  AACGGTGACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGC  454

Query  400  GACTGGATTTGCACAAGGCCTGGTTGCAACGTCC-ACAACTTTGCAAGTAGGATTGAGTG  458
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  453  GACTGGATTTGCACAAGGCCTGGTTGCAACGTCCCACAACTTTGCAAGTAGGATTGAGTG  394

Query  459  CTATAGGTGCAATGCACCTAGGGAAGCAGGTAATGTGAAGTAAGAAAAGACTGACGCGAC  518
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  393  CTATAGGTGCAATGCACCTAGGGAAGCAGGTAATGTGAAGTAAGAAAGGACTGACGCGAC  334

Query  519  CAAAGATCGTGAGACGTGACGAGCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGT  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  CAAAGATCGTGAGACGTGACGAGCTGGCCGAGGATGAATAAAGTGACTGCTGTCAGTTGT  274

Query  579  CACATTCACAGGCTGCGATCCAGAAACTATGGATGGGACTATGTAGTAACGTGCTGATAT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  CACATTCACAGGCTGCGATCCAGAAACTATGGATGGGACTATGTAGTAACGTGCTGATAT  214

Query  639  ATTATTGCTAAGTGTTACTACTGCATGGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCA  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  213  ATTATTGCTAAGTGTTACTACTGCATGGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCA  154

Query  699  AGATCGTTGTAATGTGTGAGTTTAATTTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCA  758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  153  AGATCGTTGTAATGTGTGAGTTTAATTTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCA  94

Query  759  GGATTGTACGGGGTAATGTACTTGCATTATCCATTATAATCTTAAGCATCCAATATAATT  818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  93   GGATTGTACGGGGTAATGTACTTGCATTATCCATTATAATCTTAAGCATCCAATATAATT  34

Query  819  ATGCaaaaa  827
            |||||| ||
Sbjct  33   ATGCAATAA  25

Job title: AF171223:Oryza sativa putative zinc finger...

Graphic Summary

Distribution of the top 52 Blast Hits on 50 subject sequences [?]

Descriptions

Alignments