Your search is limited to records that include: entrez query: "Oryza sativa"[Organism] AND biomol_genomic[PROP] Full Entrez Query

Edit and Resubmit [Sign in above to save your search strategy] Formatting options Download How to read this page Blast report description Click here to use the new BLAST results page Questions/comments

Formatting options
Show	Alignment as Reset form to defaults Help
Alignment View	Help
Display	Graphical Overview Linkout Sequence Retrieval NCBI-gi CDS feature Help
Masking	Character: Color: Help
Limit results	Descriptions: Graphical overview: Alignments: Line length: Help
	Organism Type common name, binomial, taxid, or group name. Only 20 top taxa will be shown. exclude Help
	Entrez query: Help
	Expect Min: Expect Max: Help
	Percent Identity Min: Percent Identity Max: Help
Format for	PSI-BLAST with inclusion threshold: Help Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

Download
Alignment Text XML ASN.1 JSON Seq-align Hit Table(text) Hit Table(csv) Multiple-file XML2 Single-file XML2 Multiple-file JSON Single-file JSON SAM	Search Strategies ASN.1	PSSM to restart search PSSM	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at https://www.ncbi.nlm.nih.gov/books/NBK153387/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1". Alignment written out in Abstract Syntax Notation 1.
4). "JSON Seq-align". Alignment written out in JSON.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.
6). "XML2". New XML format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
7). "JSON". New JSON format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
8). "SAM". Sequence Alignment Map format.

XML2 and JSON can be downloaded either as one file per query (multiple-file) or one file for all queries (single-file). These formats are listed as Multiple-file XML2 (and JSON) or Single-file XML (and JSON).

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see https://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

Job title: Contig1

RID: HGM5NBZU01R (Expires on 09-08 16:05 pm)

Query ID: lcl|Query_42631; lcl|Query_42631
Description: Contig1
Molecule type: dna
Query Length: 1335


Database Name: nt
Description: Nucleotide collection (nt) See details
Program: BLASTN 2.13.0+ Citation

Other reports: Search Summary [Distance tree of results]

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Aug 26, 2022 4:08 AM
Number of letters	2,540,435,410
Number of sequences	31,358
Entrez query	Includes: entrez query: "Oryza sativa"[Organism] AND biomol_genomic[PROP] Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	30
Effective length of query	1305
Effective length of database	2539494670
Effective search space	3314040544350
Effective search space used	3314040544350

Descriptions

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:

Select:All None Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max Score	Total Score	Query Cover	Per. Ident	Accession
1Select seq CP018162.1	Oryza sativa Indica Group cultivar Shuhui498 chromosome 6, partial sequence	680	2432	97%	99.73%	CP018162.1
2Select seq AP014962.1	Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence	680	2432	97%	99.73%	AP014962.1
3Select seq CP054681.1	Oryza sativa Indica Group cultivar Minghui 63 chromosome 6	680	2432	97%	99.73%	CP054681.1
4Select seq AP000399.1	Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0535G04	680	2432	97%	99.73%	AP000399.1
5Select seq CP012614.1	Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence	669	2393	97%	99.19%	CP012614.1
6Select seq CP056057.1	Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 6	669	2393	97%	99.19%	CP056057.1

Alignments

Download GenBank Graphics

Sort by:

Next Previous Descriptions

Oryza sativa Indica Group cultivar Shuhui498 chromosome 6, partial sequence

Sequence ID: CP018162.1Length: 32465040Number of Matches: 5

Range 1: 2041673 to 2042043GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
680 bits(368)	0.0()	371/372(99%)	1/372(0%)	Plus/Minus

Query  505      GCAGGGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  564
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2042043  GCA-GGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  2041985

Query  565      TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041984  TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  2041925

Query  625      GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  684
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041924  GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  2041865

Query  685      CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041864  CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  2041805

Query  745      AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  804
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041804  AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  2041745

Query  805      GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  864
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041744  GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  2041685

Query  865      ATTTGCACAAGG  876
                ||||||||||||
Sbjct  2041684  ATTTGCACAAGG  2041673

Range 2: 2040441 to 2040794GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
654 bits(354)	0.0()	354/354(100%)	0/354(0%)	Plus/Minus

Query  944      CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  1003
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040794  CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  2040735

Query  1004     GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  1063
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040734  GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  2040675

Query  1064     CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  1123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040674  CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  2040615

Query  1124     GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  1183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040614  GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  2040555

Query  1184     TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  1243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040554  TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  2040495

Query  1244     TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTa  1297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2040494  TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTA  2040441

Range 3: 2047083 to 2047380GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
545 bits(295)	2e-152()	297/298(99%)	0/298(0%)	Plus/Minus

Query  1        CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2047380  CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  2047321

Query  61       GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2047320  GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  2047261

Query  121      ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2047260  ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  2047201

Query  181      ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2047200  ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  2047141

Query  241      ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGCTA  298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2047140  ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGGTA  2047083

Range 4: 2042751 to 2042971GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
403 bits(218)	1e-109()	221/222(99%)	1/222(0%)	Plus/Minus

Query  289      GCTCCAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  348
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2042971  GCT-CAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  2042913

Query  349      GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  408
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2042912  GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  2042853

Query  409      AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  468
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2042852  AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  2042793

Query  469      AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  510
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2042792  AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  2042751

Range 5: 2041422 to 2041510GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
147 bits(79)	2e-32()	86/89(97%)	1/89(1%)	Plus/Minus

Query  866      TTTGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  925
                ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2041510  TTTTCACCAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  2041451

Query  926      GCAATGCACCTAGGGAAGCAGGTA-ATGT  953
                |||||||||||||||||||||||| ||||
Sbjct  2041450  GCAATGCACCTAGGGAAGCAGGTACATGT  2041422

Download GenBank Graphics

Sort by:

Next Previous Descriptions

Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence

Sequence ID: AP014962.1Length: 31248787Number of Matches: 5

Related Information

NewGenome Data Viewer-aligned genomic context

Range 1: 2163969 to 2164339GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
680 bits(368)	0.0()	371/372(99%)	1/372(0%)	Plus/Minus

Features:

os06g0141200

Query  505      GCAGGGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  564
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164339  GCA-GGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  2164281

Query  565      TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164280  TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  2164221

Query  625      GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  684
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164220  GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  2164161

Query  685      CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164160  CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  2164101

Query  745      AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  804
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164100  AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  2164041

Query  805      GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  864
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2164040  GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  2163981

Query  865      ATTTGCACAAGG  876
                ||||||||||||
Sbjct  2163980  ATTTGCACAAGG  2163969

Range 2: 2162737 to 2163090GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
654 bits(354)	0.0()	354/354(100%)	0/354(0%)	Plus/Minus

Features:

os06g0141200

Query  944      CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  1003
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2163090  CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  2163031

Query  1004     GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  1063
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2163030  GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  2162971

Query  1064     CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  1123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2162970  CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  2162911

Query  1124     GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  1183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2162910  GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  2162851

Query  1184     TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  1243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2162850  TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  2162791

Query  1244     TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTa  1297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2162790  TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTA  2162737

Range 3: 2169379 to 2169676GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
545 bits(295)	2e-152()	297/298(99%)	0/298(0%)	Plus/Minus

Features:

5057 bp at 5' side: os06g0141200 1492 bp at 3' side: os06g0141400

Query  1        CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2169676  CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  2169617

Query  61       GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2169616  GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  2169557

Query  121      ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2169556  ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  2169497

Query  181      ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2169496  ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  2169437

Query  241      ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGCTA  298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2169436  ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGGTA  2169379

Range 4: 2165047 to 2165267GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
403 bits(218)	1e-109()	221/222(99%)	1/222(0%)	Plus/Minus

Features:

725 bp at 5' side: os06g0141200 5901 bp at 3' side: os06g0141400

Query  289      GCTCCAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  348
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2165267  GCT-CAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  2165209

Query  349      GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  408
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2165208  GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  2165149

Query  409      AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  468
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2165148  AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  2165089

Query  469      AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  510
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2165088  AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  2165047

Range 5: 2163718 to 2163806GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
147 bits(79)	2e-32()	86/89(97%)	1/89(1%)	Plus/Minus

Features:

os06g0141200

Query  866      TTTGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  925
                ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2163806  TTTTCACCAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  2163747

Query  926      GCAATGCACCTAGGGAAGCAGGTA-ATGT  953
                |||||||||||||||||||||||| ||||
Sbjct  2163746  GCAATGCACCTAGGGAAGCAGGTACATGT  2163718

Download GenBank Graphics

Sort by:

Next Previous Descriptions

Oryza sativa Indica Group cultivar Minghui 63 chromosome 6

Sequence ID: CP054681.1Length: 31921180Number of Matches: 5

Range 1: 2026416 to 2026786GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
680 bits(368)	0.0()	371/372(99%)	1/372(0%)	Plus/Minus

Query  505      GCAGGGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  564
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026786  GCA-GGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  2026728

Query  565      TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026727  TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  2026668

Query  625      GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  684
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026667  GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  2026608

Query  685      CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026607  CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  2026548

Query  745      AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  804
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026547  AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  2026488

Query  805      GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  864
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026487  GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  2026428

Query  865      ATTTGCACAAGG  876
                ||||||||||||
Sbjct  2026427  ATTTGCACAAGG  2026416

Range 2: 2025184 to 2025537GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
654 bits(354)	0.0()	354/354(100%)	0/354(0%)	Plus/Minus

Query  944      CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  1003
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025537  CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  2025478

Query  1004     GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  1063
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025477  GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  2025418

Query  1064     CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  1123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025417  CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  2025358

Query  1124     GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  1183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025357  GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  2025298

Query  1184     TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  1243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025297  TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  2025238

Query  1244     TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTa  1297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2025237  TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTA  2025184

Range 3: 2031826 to 2032123GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
545 bits(295)	2e-152()	297/298(99%)	0/298(0%)	Plus/Minus

Query  1        CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2032123  CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  2032064

Query  61       GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2032063  GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  2032004

Query  121      ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2032003  ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  2031944

Query  181      ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2031943  ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  2031884

Query  241      ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGCTA  298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2031883  ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGGTA  2031826

Range 4: 2027494 to 2027714GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
403 bits(218)	1e-109()	221/222(99%)	1/222(0%)	Plus/Minus

Query  289      GCTCCAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  348
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2027714  GCT-CAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  2027656

Query  349      GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  408
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2027655  GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  2027596

Query  409      AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  468
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2027595  AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  2027536

Query  469      AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  510
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2027535  AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  2027494

Range 5: 2026165 to 2026253GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
147 bits(79)	2e-32()	86/89(97%)	1/89(1%)	Plus/Minus

Query  866      TTTGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  925
                ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2026253  TTTTCACCAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  2026194

Query  926      GCAATGCACCTAGGGAAGCAGGTA-ATGT  953
                |||||||||||||||||||||||| ||||
Sbjct  2026193  GCAATGCACCTAGGGAAGCAGGTACATGT  2026165

Download GenBank Graphics

Sort by:

Next Previous Descriptions

Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0535G04

Sequence ID: AP000399.1Length: 154180Number of Matches: 5

Range 1: 22418 to 22788GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
680 bits(368)	0.0()	371/372(99%)	1/372(0%)	Plus/Minus

Query  505    GCAGGGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  564
              ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22788  GCA-GGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  22730

Query  565    TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  624
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22729  TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  22670

Query  625    GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  684
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22669  GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  22610

Query  685    CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  744
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22609  CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  22550

Query  745    AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  804
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22549  AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  22490

Query  805    GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  864
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22489  GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  22430

Query  865    ATTTGCACAAGG  876
              ||||||||||||
Sbjct  22429  ATTTGCACAAGG  22418

Range 2: 21186 to 21539GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
654 bits(354)	0.0()	354/354(100%)	0/354(0%)	Plus/Minus

Query  944    CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  1003
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21539  CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  21480

Query  1004   GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  1063
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21479  GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  21420

Query  1064   CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  1123
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21419  CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  21360

Query  1124   GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  1183
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21359  GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  21300

Query  1184   TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  1243
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21299  TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  21240

Query  1244   TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTa  1297
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21239  TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTA  21186

Range 3: 27828 to 28125GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
545 bits(295)	2e-152()	297/298(99%)	0/298(0%)	Plus/Minus

Query  1      CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28125  CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  28066

Query  61     GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28065  GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  28006

Query  121    ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  28005  ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  27946

Query  181    ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27945  ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  27886

Query  241    ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGCTA  298
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  27885  ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGGTA  27828

Range 4: 23496 to 23716GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
403 bits(218)	1e-109()	221/222(99%)	1/222(0%)	Plus/Minus

Query  289    GCTCCAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  348
              ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23716  GCT-CAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  23658

Query  349    GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  408
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23657  GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  23598

Query  409    AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  468
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23597  AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  23538

Query  469    AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  510
              ||||||||||||||||||||||||||||||||||||||||||
Sbjct  23537  AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  23496

Range 5: 22167 to 22255GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
147 bits(79)	2e-32()	86/89(97%)	1/89(1%)	Plus/Minus

Query  866    TTTGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  925
              ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22255  TTTTCACCAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  22196

Query  926    GCAATGCACCTAGGGAAGCAGGTA-ATGT  953
              |||||||||||||||||||||||| ||||
Sbjct  22195  GCAATGCACCTAGGGAAGCAGGTACATGT  22167

Download GenBank Graphics

Sort by:

Next Previous Descriptions

Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence

Sequence ID: CP012614.1Length: 30903862Number of Matches: 5

Range 1: 2077246 to 2077616GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
669 bits(362)	0.0()	369/372(99%)	1/372(0%)	Plus/Minus

Query  505      GCAGGGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  564
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077616  GCA-GGGCTTAACTGCGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCG  2077558

Query  565      TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077557  TGCCAGCATCTCAACTTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAG  2077498

Query  625      GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  684
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077497  GACCTGCCGCTTGGCGATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGC  2077438

Query  685      CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077437  CCGGGCGACTGGTACTGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTC  2077378

Query  745      AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  804
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077377  AAATGTGGCGCCATTGTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGT  2077318

Query  805      GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGG  864
                |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  2077317  GACTTTGCCCGTGCCCTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGG  2077258

Query  865      ATTTGCACAAGG  876
                ||||||||||||
Sbjct  2077257  ATTTGCACAAGG  2077246

Range 2: 2076014 to 2076367GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #2
Score	Expect	Identities	Gaps	Strand	Frame
649 bits(351)	0.0()	353/354(99%)	0/354(0%)	Plus/Minus

Query  944      CAGGTAATGTGAAGTAAGAAAGGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  1003
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  2076367  CAGGTAATGTGAAGTAAGAAAAGACTGACGCGACCAAAGATCGTGAGACGTGACGAGCTG  2076308

Query  1004     GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  1063
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2076307  GCCGAGGATGAATAAAGTGACTGCTGTCAGTTGTCACATTCACAGGCTGCGATCCAGAAA  2076248

Query  1064     CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  1123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2076247  CTATGGATGGGACTATGTAGTAACGTGCTGATATATTATTGCTAAGTGTTACTACTGCAT  2076188

Query  1124     GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  1183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2076187  GGTTGCAAGGGTGGTAGAAGTACCTTAGCTTCCAAGATCGTTGTAATGTGTGAGTTTAAT  2076128

Query  1184     TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  1243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2076127  TTTGGCGTTTTAAGTAATAAGTCTAGTGATTGCAGGATTGTACGGGGTAATGTACTTGCA  2076068

Query  1244     TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTa  1297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2076067  TTATCCATTATAATCTTAAGCATCCAATATAATTATGCAATAATTCGTGCCTTA  2076014

Range 3: 2082656 to 2082953GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #3
Score	Expect	Identities	Gaps	Strand	Frame
534 bits(289)	3e-149()	295/298(99%)	0/298(0%)	Plus/Minus

Query  1        CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2082953  CAAATAGCCCAACTCGTGATCGCGCCGCCGCCGTGCTCTCCACCGGAGAGAGCGGCGGAG  2082894

Query  61       GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2082893  GAGAGCAAGTGGGGATAGGGGCCGGTCGGGGTTGCGACGGGCGGGAGCGGGAGGAGGCGC  2082834

Query  121      ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2082833  ACGCTGCCTGAATGCCGGCGCCGTCGACGACCTCGCCGGTGATTGGTTCGCGCTCCGGCG  2082774

Query  181      ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2082773  ATCGTCGAGGGCCGCCCGGGCAGGCGGAGGAGCGGAGGAGGCAAAGCGAGTGGCCGCGAG  2082714

Query  241      ACCTCCGCTTCCATCGCGCGGCTCGCAGTCGCAAACCCTACCAAATTTGCTCCAGCTA  298
                ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||
Sbjct  2082713  ACCTCCGCTTCCATCGCGCGGCTCGCAGTCTTAAACCCTACCAAATTTGCTCCAGGTA  2082656

Range 4: 2078324 to 2078544GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #4
Score	Expect	Identities	Gaps	Strand	Frame
392 bits(212)	2e-106()	219/222(99%)	1/222(0%)	Plus/Minus

Query  289      GCTCCAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCGCCTCCACAGCACACCCT  348
                ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2078544  GCT-CAGCTAGAAAGGCTAAGATCAGAACAGAGCATCTCCGCACCTCCACAGCACACCCT  2078486

Query  349      GGATTCGCAATTATTGGGGGCAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  408
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  2078485  GGATTCGCAATTATTGGGGGAAACTCCACTATAAAAAGCGAACCATCCACAAGAAGTAAG  2078426

Query  409      AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  468
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2078425  AACACACCAAGAAAGCAAGCTCACAACAAGGACAAGACAGGAACTGAAAGCCCTAGTACT  2078366

Query  469      AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  510
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2078365  AAGAACAGCAACCACCTCTGAAAGCTTTACAAGTTCGCAGGG  2078324

Range 5: 2076995 to 2077083GenBank Graphics Next Match Previous Match First Match

Alignment statistics for match #5
Score	Expect	Identities	Gaps	Strand	Frame
147 bits(79)	2e-32()	86/89(97%)	1/89(1%)	Plus/Minus

Query  866      TTTGCACAAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  925
                ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2077083  TTTTCACCAGGCCTGGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGT  2077024

Query  926      GCAATGCACCTAGGGAAGCAGGTA-ATGT  953
                |||||||||||||||||||||||| ||||
Sbjct  2077023  GCAATGCACCTAGGGAAGCAGGTACATGT  2076995

Job title: Contig1

Graphic Summary

Distribution of the top 30 Blast Hits on 6 subject sequences [?]

Descriptions

Alignments