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Alignment Text XML ASN.1 JSON Seq-align Hit Table(text) Hit Table(csv) Multiple-file XML2 Single-file XML2 Multiple-file JSON Single-file JSON SAM	Search Strategies ASN.1	PSSM to restart search PSSM	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at https://www.ncbi.nlm.nih.gov/books/NBK153387/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1". Alignment written out in Abstract Syntax Notation 1.
4). "JSON Seq-align". Alignment written out in JSON.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.
6). "XML2". New XML format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
7). "JSON". New JSON format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
8). "SAM". Sequence Alignment Map format.

XML2 and JSON can be downloaded either as one file per query (multiple-file) or one file for all queries (single-file). These formats are listed as Multiple-file XML2 (and JSON) or Single-file XML (and JSON).

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see https://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

Job title: cDNA, 490 bases, Oryza sativa

RID: HC6FH214016 (Expires on 09-06 23:46 pm)

Query ID: lcl|Query_43321; lcl|Query_43321
Description: cDNA, 490 bases, Oryza sativa
Molecule type: dna
Query Length: 490


Database Name: nt
Description: Nucleotide collection (nt) See details
Program: BLASTN 2.13.0+ Citation

Reference

Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.

Reference - database indexing

Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer (2008), "Database Indexing for Production MegaBLAST Searches", Bioinformatics 24:1757-1764.

Other reports: Search Summary [Distance tree of results]

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	0.05
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Aug 31, 2022 2:44 PM
Number of letters	859,114,427,265
Number of sequences	85,877,331
Entrez query	Includes: Excludes: None

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	36
Effective length of query	454
Effective length of database	856022843349
Effective search space	388634370880446
Effective search space used	388634370880446

Descriptions

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:

Select:All None Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max Score	Total Score	Query Cover	E value	Per. Ident	Accession
1Select seq AF171223.1	Oryza sativa putative zinc finger protein mRNA, complete cds	776	776	85%	0.0	100.00%	AF171223.1
2Select seq CT830197.1	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA011C15, full insert sequence	771	771	85%	0.0	99.76%	CT830197.1
3Select seq XM_015786400.2	PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein C17H9.04c (LOC4340075), transcript variant X2, mRNA	760	760	85%	0.0	99.29%	XM_015786400.2
4Select seq XM_015786399.2	PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein C17H9.04c (LOC4340075), transcript variant X1, mRNA	760	760	85%	0.0	99.29%	XM_015786399.2
5Select seq AK061234.1	Oryza sativa Japonica Group cDNA clone:006-211-B04, full insert sequence	760	760	85%	0.0	99.29%	AK061234.1
6Select seq AK099058.1	Oryza sativa Japonica Group cDNA clone:J013154B21, full insert sequence	760	760	85%	0.0	99.29%	AK099058.1
7Select seq CP012614.1	Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence	654	781	86%	0.0	99.72%	CP012614.1
8Select seq CP056057.1	Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 6	654	781	86%	0.0	99.72%	CP056057.1
9Select seq CP018162.1	Oryza sativa Indica Group cultivar Shuhui498 chromosome 6, partial sequence	643	770	86%	6e-180	99.16%	CP018162.1
10Select seq AP014962.1	Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence	643	770	86%	6e-180	99.16%	AP014962.1
11Select seq CP054681.1	Oryza sativa Indica Group cultivar Minghui 63 chromosome 6	643	770	86%	6e-180	99.16%	CP054681.1
12Select seq AP000399.1	Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0535G04	643	770	86%	6e-180	99.16%	AP000399.1
13Select seq XM_015838907.2	PREDICTED: Oryza brachyantha uncharacterized RNA-binding protein C17H9.04c-like (LOC107304508), transcript variant X2, mRNA	601	601	85%	4e-167	92.43%	XM_015838907.2
14Select seq XM_015838906.2	PREDICTED: Oryza brachyantha uncharacterized RNA-binding protein C17H9.04c-like (LOC107304508), transcript variant X1, mRNA	601	601	85%	4e-167	92.43%	XM_015838906.2
15Select seq XM_010229791.3	PREDICTED: Brachypodium distachyon uncharacterized RNA-binding protein C17H9.04c (LOC100824932), transcript variant X4, mRNA	313	313	85%	2e-80	81.00%	XM_010229791.3
16Select seq XM_014896389.2	PREDICTED: Brachypodium distachyon uncharacterized RNA-binding protein C17H9.04c (LOC100824932), transcript variant X3, mRNA	313	313	85%	2e-80	81.00%	XM_014896389.2
17Select seq XM_010229792.3	PREDICTED: Brachypodium distachyon uncharacterized RNA-binding protein C17H9.04c (LOC100824932), transcript variant X2, mRNA	313	313	85%	2e-80	81.00%	XM_010229792.3
18Select seq XM_003557152.3	PREDICTED: Brachypodium distachyon uncharacterized RNA-binding protein C17H9.04c (LOC100824932), transcript variant X1, mRNA	313	313	85%	2e-80	81.00%	XM_003557152.3
19Select seq XM_047219332.1	PREDICTED: Lolium rigidum RNA-binding protein involved in heterochromatin assembly dri1-like (LOC124685047), transcript variant X2, mRNA	274	274	85%	1e-68	79.33%	XM_047219332.1
20Select seq XM_047219330.1	PREDICTED: Lolium rigidum RNA-binding protein involved in heterochromatin assembly dri1-like (LOC124685047), transcript variant X1, mRNA	274	274	85%	1e-68	79.33%	XM_047219330.1
21Select seq EF059989.1	Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds	254	349	68%	1e-62	83.70%	EF059989.1
22Select seq MT612432.1	Cloning vector pAAV-EF1A-Gephyrin.FingR-GFP-CCR5TC, complete sequence	130	130	14%	2e-25	100.00%	MT612432.1
23Select seq MT612429.1	Cloning vector pAAV-EF1A-PSD95.FingR-GFP-CCR5TC, complete sequence	130	130	14%	2e-25	100.00%	MT612429.1
24Select seq MT612428.1	Cloning vector pAAV-EF1A-mRuby2-Gephyrin.FingR-IL2RGTC, complete sequence	130	130	14%	2e-25	100.00%	MT612428.1
25Select seq MT586119.1	Cloning vector pAAV-EF1A-mScarlet-Gephyrin.FingR-IL2RGTC, complete sequence	130	130	14%	2e-25	100.00%	MT586119.1
26Select seq MT453110.1	Cloning vector pBXL_attP_PUbDsRed.T3_fa_s1-tTA_a, complete sequence	130	130	14%	2e-25	100.00%	MT453110.1
27Select seq MN996874.1	Cloning vector sh-AFP-PPP2CA, complete sequence	130	130	14%	2e-25	100.00%	MN996874.1
28Select seq MN996873.1	Cloning vector sh-PPP2CA.dna, complete sequence	130	130	14%	2e-25	100.00%	MN996873.1
29Select seq MN996872.1	Cloning vector sh-ctrl, complete sequence	130	130	14%	2e-25	100.00%	MN996872.1
30Select seq MN996871.1	Cloning vector sh-AFP, complete sequence	130	130	14%	2e-25	100.00%	MN996871.1
31Select seq MT221180.1	Cloning vector CAS9, complete sequence	130	130	14%	2e-25	100.00%	MT221180.1
32Select seq MN161744.1	Cloning vector pEA206, complete sequence	130	130	14%	2e-25	100.00%	MN161744.1
33Select seq CP046410.1	Aeromonas veronii strain A8-AHP plasmid pA8AHP3, complete sequence	130	130	14%	2e-25	100.00%	CP046410.1
34Select seq MN326018.1	Transformation vector pMEK19, complete sequence	130	130	14%	2e-25	100.00%	MN326018.1
35Select seq MN326017.1	Transformation vector pMEK18, complete sequence	130	130	14%	2e-25	100.00%	MN326017.1
36Select seq MK422201.1	Cloning vector PB-Gal4-mCherry-RUNX1a-Teton-GFP-RUNX1b, complete sequence	130	130	14%	2e-25	100.00%	MK422201.1
37Select seq MK422200.1	Cloning vector PB-Gal4-Teton-cis, complete sequence	130	130	14%	2e-25	100.00%	MK422200.1
38Select seq MK422199.1	Cloning vector PB-Gal4-Teton-trans, complete sequence	130	130	14%	2e-25	100.00%	MK422199.1
39Select seq MK838522.1	Synthetic construct Engrailed-ORF-amphi-bl-Zic sequence	130	130	14%	2e-25	100.00%	MK838522.1
40Select seq MK838521.1	Synthetic construct VP16-ORF-amphi-bl-Zic sequence	130	130	14%	2e-25	100.00%	MK838521.1
41Select seq MK838520.1	Synthetic construct Engrailed-DBD-amphi-bl-Pax3/7 sequence	130	130	14%	2e-25	100.00%	MK838520.1
42Select seq MK838519.1	Synthetic construct VP16-DBD-amphi-bl-Pax3/7 sequence	130	130	14%	2e-25	100.00%	MK838519.1
43Select seq MK838518.1	Synthetic construct Engrailed-ORF-amphi-bl-Six1/2 sequence	130	130	14%	2e-25	100.00%	MK838518.1
44Select seq MK838517.1	Synthetic construct VP16-ORF-amphi-bl-Six1/2 sequence	130	130	14%	2e-25	100.00%	MK838517.1
45Select seq MK838516.1	Synthetic construct Engrailed-DBD-amphi-bl-Etv1/4/5 sequence	130	130	14%	2e-25	100.00%	MK838516.1
46Select seq MK838515.1	Synthetic construct VP16-DBD-amphi-bl-Etv1/4/5 sequence	130	130	14%	2e-25	100.00%	MK838515.1
47Select seq MN019123.1	Cloning vector pBM019, complete sequence	130	130	14%	2e-25	100.00%	MN019123.1
48Select seq MK674483.1	Synthetic construct CamKII-tTA Transgene Array TG-VECTOR-TG sequence; and ampicillin resistance protein (ampR), complete cds	130	130	14%	2e-25	100.00%	MK674483.1
49Select seq MH590894.1	Transformation vector pJF1153, complete sequence	130	130	14%	2e-25	100.00%	MH590894.1
50Select seq MH590893.1	Transformation vector pJF1151, complete sequence	130	130	14%	2e-25	100.00%	MH590893.1
51Select seq MH590892.1	Transformation vector pJF1150, complete sequence	130	130	14%	2e-25	100.00%	MH590892.1
52Select seq MH590891.1	Transformation vector pCH8, complete sequence	130	130	14%	2e-25	100.00%	MH590891.1
53Select seq MK317920.1	Cloning vector PBTH-mwtGFP, complete sequence	130	130	14%	2e-25	100.00%	MK317920.1
54Select seq MK317919.1	Cloning vector PBQP-IntB1-EGFP2x, complete sequence	130	130	14%	2e-25	100.00%	MK317919.1
55Select seq MK317918.1	Cloning vector PBQP-H2B-EGFP2x, complete sequence	130	130	14%	2e-25	100.00%	MK317918.1
56Select seq MK317914.1	Cloning vector PBQB-MWTGFP, complete sequence	130	130	14%	2e-25	100.00%	MK317914.1
57Select seq MK317913.1	Cloning vector PBTRE-IntB1-ArrayG, complete sequence	130	130	14%	2e-25	100.00%	MK317913.1
58Select seq MK317910.1	Cloning vector H2B-ARRAYGN, complete sequence	130	130	14%	2e-25	100.00%	MK317910.1
59Select seq MH037010.1	Vector NanoLucNeo, complete sequence	130	130	14%	2e-25	100.00%	MH037010.1
60Select seq MH488950.1	Cloning vector pWAS-anti-fadR-anti-xapR, complete sequence	130	130	14%	2e-25	100.00%	MH488950.1
61Select seq MH488948.1	Cloning vector pWAS-anti-pabA, complete sequence	130	130	14%	2e-25	100.00%	MH488948.1
62Select seq MH488912.1	Cloning vector pWAS, complete sequence	130	130	14%	2e-25	100.00%	MH488912.1
63Select seq MH282432.1	Vector pAAV-hSyn1-GCaMP6s-P2A-mRuby3, complete sequence	130	130	14%	2e-25	100.00%	MH282432.1
64Select seq MH282431.1	Vector pAAV-hSyn1-GCaMP6s-P2A-mKate2, complete sequence	130	130	14%	2e-25	100.00%	MH282431.1
65Select seq MH282430.1	Vector pAAV-hSyn1-GAP43-GCaMP6s, complete sequence	130	130	14%	2e-25	100.00%	MH282430.1
66Select seq MH282429.1	Vector pAAV-hSyn1-GAP43-GCaMP6s-P2A-mRuby3, complete sequence	130	130	14%	2e-25	100.00%	MH282429.1
67Select seq MH282428.1	Vector pAAV-hSyn1-GAP43-GCaMP6s-P2A-mKate2, complete sequence	130	130	14%	2e-25	100.00%	MH282428.1
68Select seq MH282427.1	Vector pAAV-hSyn1-GAP43-GCaMP6m, complete sequence	130	130	14%	2e-25	100.00%	MH282427.1
69Select seq MH282426.1	Vector pAAV-hSyn1-GAP43-GCaMP6f, complete sequence	130	130	14%	2e-25	100.00%	MH282426.1
70Select seq MH282425.1	Vector pAAV-hSyn1-FLEx-GAP43-GCaMP6s, complete sequence	130	130	14%	2e-25	100.00%	MH282425.1
71Select seq MH282424.1	Vector pAAV-hSyn1-FLEX-GAP43-GCaMP6s-P2A-mRuby3, complete sequence	130	130	14%	2e-25	100.00%	MH282424.1
72Select seq MH282423.1	Vector pAAV-hSyn1-FLEX-GCaMP6s-P2A-mRuby3, complete sequence	130	130	14%	2e-25	100.00%	MH282423.1
73Select seq MH187600.1	Cloning vector pBS[NBL KO 1], complete sequence	130	130	14%	2e-25	100.00%	MH187600.1
74Select seq MH220818.1	Cloning vector pCnCas9:U6-gRNA, complete sequence	130	130	14%	2e-25	100.00%	MH220818.1
75Select seq MG687284.1	Cloning vector GAANTRY P donor nptII, complete sequence	130	130	14%	2e-25	100.00%	MG687284.1
76Select seq MG687283.1	Cloning vector GAANTRY B donor tdTom, complete sequence	130	130	14%	2e-25	100.00%	MG687283.1
77Select seq MG687282.1	Cloning vector GAANTRY B donor MoroMYB, complete sequence	130	130	14%	2e-25	100.00%	MG687282.1
78Select seq MG687281.1	Cloning vector GAANTRY P donor TBS, complete sequence	130	130	14%	2e-25	100.00%	MG687281.1
79Select seq OL452023.1	Synthetic construct pCas9activity, complete sequence	130	130	14%	2e-25	100.00%	OL452023.1
80Select seq OL452022.1	Synthetic construct pAePUbEGFP, complete sequence	130	130	14%	2e-25	100.00%	OL452022.1
81Select seq OL452020.1	Synthetic construct pAeaPUbCas9, complete sequence	130	130	14%	2e-25	100.00%	OL452020.1
82Select seq OL452017.1	Synthetic construct AeaB2tC109GD, complete sequence	130	130	14%	2e-25	100.00%	OL452017.1
83Select seq OL452016.1	Synthetic construct AeaZpgC109GD, complete sequence	130	130	14%	2e-25	100.00%	OL452016.1
84Select seq OL452015.1	Synthetic construct AeaNosC109GD, complete sequence	130	130	14%	2e-25	100.00%	OL452015.1
85Select seq ON287367.1	Vector CaHygB-flipper, complete sequence	130	130	14%	2e-25	100.00%	ON287367.1
86Select seq ON246334.1	Vector pBSS2, complete sequence	130	130	14%	2e-25	100.00%	ON246334.1
87Select seq OL809666.1	Synthetic construct immunoglobulin kappa light chain variable region IGKV3-20 and immunoglobulin kappa light chain variable region IGKV1-17 genes, partial cds	130	130	14%	2e-25	100.00%	OL809666.1
88Select seq MW079340.1	Transfection vector Cas9-TagBFP, complete sequence	130	130	14%	2e-25	100.00%	MW079340.1
89Select seq OK413188.1	Synthetic construct plasmid 020_pB_CAG_moxGFPnls_P2A_SecNanoLuc, complete sequence	130	130	14%	2e-25	100.00%	OK413188.1
90Select seq MZ783067.1	Cloning vector LctraKI, complete sequence	130	130	14%	2e-25	100.00%	MZ783067.1
91Select seq CP080650.1	Ruficoccus sp. ZRK36 plasmid p36, complete sequence	130	130	14%	2e-25	100.00%	CP080650.1
92Select seq MZ328883.1	Transformation vector FL20, complete sequence	130	130	14%	2e-25	100.00%	MZ328883.1
93Select seq MT891341.1	Cloning vector pT-PGK-mCherry, complete sequence	130	130	14%	2e-25	100.00%	MT891341.1
94Select seq MW139901.1	Cloning vector AAV-CaMKII-GCaMP6f-4X128-mAGNET, complete sequence	130	130	14%	2e-25	100.00%	MW139901.1
95Select seq MW139900.1	Cloning vector AAV-CaMKII-GCaMP6f, complete sequence	130	130	14%	2e-25	100.00%	MW139900.1
96Select seq MW139899.1	Cloning vector AAV-CaMKII-mRuby2-4X128-mAGNET, complete sequence	130	130	14%	2e-25	100.00%	MW139899.1
97Select seq MT936307.1	Cloning vector pEASY-Flox-FRT-foxa2KI, complete sequence	130	130	14%	2e-25	100.00%	MT936307.1
98Select seq MT180326.1	Cloning vector pD2, complete sequence	130	130	14%	2e-25	100.00%	MT180326.1
99Select seq MT180325.1	Cloning vector pD1, complete sequence	130	130	14%	2e-25	100.00%	MT180325.1
100Select seq MT180324.1	Synthetic construct AmpR (ampR) gene, complete cds	130	130	14%	2e-25	100.00%	MT180324.1

Alignments

Download GenBank Graphics Next Previous Descriptions

Oryza sativa putative zinc finger protein mRNA, complete cds

Sequence ID: AF171223.1Length: 834Number of Matches: 1

Related Information

GEO Profiles-microarray expression data

Range 1: 61 to 480GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
776 bits(420)	0.0()	420/420(100%)	0/420(0%)	Plus/Plus

Query  1    CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  120

Query  61   TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  180

Query  121  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  240

Query  181  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  300

Query  241  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  360

Query  301  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  420

Query  361  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  480

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Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA011C15, full insert sequence

Sequence ID: CT830197.1Length: 886Number of Matches: 1

Range 1: 110 to 529GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
771 bits(417)	0.0()	419/420(99%)	0/420(0%)	Plus/Plus

Query  1    CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  110  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  169

Query  61   TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  229

Query  121  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  230  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  289

Query  181  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  349

Query  241  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  409

Query  301  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  469

Query  361  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  529

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PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein C17H9.04c (LOC4340075), transcript variant X2, mRNA

Sequence ID: XM_015786400.2Length: 1297Number of Matches: 1

Related Information

Gene-associated gene details

NewGenome Data Viewer-aligned genomic context

Range 1: 520 to 939GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
760 bits(411)	0.0()	417/420(99%)	0/420(0%)	Plus/Plus

Query  1    CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  579

Query  61   TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  580  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  639

Query  121  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  640  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  699

Query  181  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  700  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  759

Query  241  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  760  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  819

Query  301  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  360
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  820  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGGATTTGCACAAGGCCT  879

Query  361  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  939

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PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein C17H9.04c (LOC4340075), transcript variant X1, mRNA

Sequence ID: XM_015786399.2Length: 1299Number of Matches: 1

Related Information

Gene-associated gene details

NewGenome Data Viewer-aligned genomic context

Range 1: 522 to 941GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
760 bits(411)	0.0()	417/420(99%)	0/420(0%)	Plus/Plus

Query  1    CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  522  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  581

Query  61   TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  582  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  641

Query  121  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  642  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  701

Query  181  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  702  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  761

Query  241  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  762  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  821

Query  301  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  360
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  822  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGGATTTGCACAAGGCCT  881

Query  361  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  882  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  941

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Oryza sativa Japonica Group cDNA clone:006-211-B04, full insert sequence

Sequence ID: AK061234.1Length: 890Number of Matches: 1

Related Information

Gene-associated gene details

GEO Profiles-microarray expression data

Range 1: 114 to 533GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
760 bits(411)	0.0()	417/420(99%)	0/420(0%)	Plus/Plus

Query  1    CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  CGAATGAACATCCAGAGGAAGCCAGGAGACTGGAACTGCAAATCGTGCCAGCATCTCAAC  173

Query  61   TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  174  TTCAGCCGCCGGGACTACTGCCAGCGCTGCCATACCCCACGCCAGGACCTGCCGCTTGGC  233

Query  121  GATGGTTATGTCCCAGGTGGTGTGCTGTCCTCCCTGGACATTCGCCCGGGCGACTGGTAC  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  234  GATGGTTATGTCCCAGGTGGTGTGCTGACCTCCCTGGACATTCGCCCGGGCGACTGGTAC  293

Query  181  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  TGCAACTGCGGCTATCACAACTTTGCTAGCCGAGCAAGCTGCTTCAAATGTGGCGCCATT  353

Query  241  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  GTGAAGGACCTTCCAGCAGGCCAAGGTGGTGGTGTTGCCAACGGTGACTTTGCCCGTGCC  413

Query  301  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCGGGTGACTGGATTTGCACAAGGCCT  360
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  414  CTCGACAGCAGCGCAGTTCGTGCTGGGTGGAAGGCAGGCGACTGGATTTGCACAAGGCCT  473

Query  361  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  GGTTGCAACGTCCACAACTTTGCAAGTAGGATTGAGTGCTATAGGTGCAATGCACCTAGG  533

Job title: cDNA, 490 bases, Oryza sativa

Graphic Summary

Distribution of the top 107 Blast Hits on 100 subject sequences [?]

Descriptions

Alignments