## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates  --INPUT SRR7062655.bam --OUTPUT SRR7062655.md.bam --METRICS_FILE SRR7062655.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true  --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Oct 22 20:33:03 UTC 2021

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062655	326129	186719183	448939	918435	103379	9817860	0	0.052812	1712741376

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	167769694	167769694
2.0	1.896715	8641181	8641181
3.0	2.700811	439687	439687
4.0	3.421857	32981	32981
5.0	4.068429	7078	7078
6.0	4.648219	3077	3077
7.0	5.168125	1748	1748
8.0	5.634333	1136	1136
9.0	6.052388	770	770
10.0	6.427264	552	552
11.0	6.763421	389	389
12.0	7.064858	294	294
13.0	7.335161	219	219
14.0	7.577545	163	163
15.0	7.794895	129	129
16.0	7.989795	111	111
17.0	8.164565	73	73
18.0	8.321284	89	89
19.0	8.461816	82	82
20.0	8.587834	68	68
21.0	8.700835	58	58
22.0	8.802165	40	40
23.0	8.893029	29	29
24.0	8.974508	44	44
25.0	9.047572	34	34
26.0	9.113089	24	24
27.0	9.171839	30	30
28.0	9.224521	34	34
29.0	9.271762	26	26
30.0	9.314124	34	34
31.0	9.35211	37	37
32.0	9.386173	25	25
33.0	9.416717	30	30
34.0	9.444107	28	28
35.0	9.468668	25	25
36.0	9.490692	25	25
37.0	9.510441	33	33
38.0	9.528151	26	26
39.0	9.544031	29	29
40.0	9.558271	23	23
41.0	9.571041	30	30
42.0	9.582491	22	22
43.0	9.592759	28	28
44.0	9.601966	29	29
45.0	9.610222	36	36
46.0	9.617626	39	39
47.0	9.624265	27	27
48.0	9.630218	30	30
49.0	9.635556	37	37
50.0	9.640343	35	35
51.0	9.644636	24	24
52.0	9.648485	27	27
53.0	9.651936	27	27
54.0	9.655031	24	24
55.0	9.657807	28	28
56.0	9.660296	18	18
57.0	9.662527	26	26
58.0	9.664528	24	24
59.0	9.666323	27	27
60.0	9.667932	31	31
61.0	9.669375	30	30
62.0	9.670669	28	28
63.0	9.671829	20	20
64.0	9.67287	16	16
65.0	9.673803	24	24
66.0	9.674639	17	17
67.0	9.675389	11	11
68.0	9.676062	16	16
69.0	9.676665	24	24
70.0	9.677206	18	18
71.0	9.677691	22	22
72.0	9.678126	10	10
73.0	9.678516	15	15
74.0	9.678866	16	16
75.0	9.67918	13	13
76.0	9.679461	10	10
77.0	9.679713	10	10
78.0	9.679939	8	8
79.0	9.680142	14	14
80.0	9.680324	11	11
81.0	9.680487	11	11
82.0	9.680633	3	3
83.0	9.680764	4	4
84.0	9.680882	0	0
85.0	9.680987	3	3
86.0	9.681082	5	5
87.0	9.681167	4	4
88.0	9.681243	4	4
89.0	9.681311	3	3
90.0	9.681372	4	4
91.0	9.681427	1	1
92.0	9.681476	5	5
93.0	9.68152	3	3
94.0	9.681559	2	2
95.0	9.681595	4	4
96.0	9.681627	4	4
97.0	9.681655	4	4
98.0	9.681681	5	5
99.0	9.681704	3	3
100.0	9.681724	2	2
102.0	0	5	5
103.0	0	6	6
104.0	0	3	3
106.0	0	4	4
107.0	0	4	4
108.0	0	4	4
109.0	0	4	4
111.0	0	3	3
112.0	0	2	2
113.0	0	5	5
115.0	0	3	3
116.0	0	1	1
117.0	0	4	4
118.0	0	1	1
119.0	0	1	1
120.0	0	2	2
121.0	0	1	1
122.0	0	7	7
123.0	0	1	1
124.0	0	3	3
125.0	0	2	2
126.0	0	2	2
127.0	0	1	1
128.0	0	2	2
131.0	0	2	2
132.0	0	2	2
133.0	0	1	1
134.0	0	2	2
135.0	0	2	2
136.0	0	2	2
137.0	0	2	2
138.0	0	2	2
139.0	0	2	2
141.0	0	1	1
143.0	0	1	1
144.0	0	2	2
145.0	0	1	1
147.0	0	3	3
148.0	0	1	1
149.0	0	3	3
150.0	0	2	2
151.0	0	3	3
152.0	0	1	1
153.0	0	2	2
154.0	0	1	1
155.0	0	5	5
156.0	0	2	2
158.0	0	2	2
159.0	0	1	1
160.0	0	2	2
161.0	0	1	1
162.0	0	2	2
163.0	0	5	5
164.0	0	1	1
166.0	0	1	1
167.0	0	3	3
169.0	0	1	1
170.0	0	3	3
171.0	0	1	1
172.0	0	1	1
173.0	0	3	3
174.0	0	2	2
175.0	0	1	1
178.0	0	2	2
181.0	0	1	1
182.0	0	2	2
183.0	0	1	1
184.0	0	2	2
185.0	0	1	1
188.0	0	2	2
189.0	0	2	2
190.0	0	2	2
191.0	0	1	1
193.0	0	1	1
195.0	0	2	2
196.0	0	1	1
198.0	0	1	1
201.0	0	1	1
204.0	0	1	1
207.0	0	1	1
208.0	0	1	1
211.0	0	2	2
214.0	0	1	1
219.0	0	1	1
220.0	0	1	1
224.0	0	1	1
225.0	0	1	1
226.0	0	1	1
230.0	0	2	2
231.0	0	1	1
232.0	0	1	1
235.0	0	1	1
236.0	0	1	1
237.0	0	1	1
243.0	0	1	1
247.0	0	1	1
250.0	0	1	1
253.0	0	1	1
273.0	0	1	1
275.0	0	1	1