## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates  --INPUT SRR7062654.bam --OUTPUT SRR7062654.md.bam --METRICS_FILE SRR7062654.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true  --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Oct 22 20:32:58 UTC 2021

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062654	333849	185270090	425104	925323	98914	6063855	0	0.032967	2768196175

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	173482476	173482476
2.0	1.935262	5525296	5525296
3.0	2.809978	175944	175944
4.0	3.628067	11457	11457
5.0	4.393195	3428	3428
6.0	5.10879	1871	1871
7.0	5.77806	1129	1129
8.0	6.404002	827	827
9.0	6.989423	590	590
10.0	7.536945	410	410
11.0	8.049021	278	278
12.0	8.527948	220	220
13.0	8.975869	156	156
14.0	9.394793	138	138
15.0	9.786597	93	93
16.0	10.153037	84	84
17.0	10.495754	71	71
18.0	10.816285	55	55
19.0	11.116065	47	47
20.0	11.396438	46	46
21.0	11.658661	49	49
22.0	11.903908	36	36
23.0	12.133278	40	40
24.0	12.347799	24	24
25.0	12.548433	36	36
26.0	12.736078	27	27
27.0	12.911576	32	32
28.0	13.075712	28	28
29.0	13.229222	29	29
30.0	13.372795	37	37
31.0	13.507073	21	21
32.0	13.632658	24	24
33.0	13.750113	26	26
34.0	13.859965	28	28
35.0	13.962705	21	21
36.0	14.058793	24	24
37.0	14.148661	17	17
38.0	14.232712	18	18
39.0	14.311321	20	20
40.0	14.384841	17	17
41.0	14.453602	18	18
42.0	14.517911	29	29
43.0	14.578057	23	23
44.0	14.634309	22	22
45.0	14.68692	23	23
46.0	14.736125	30	30
47.0	14.782144	27	27
48.0	14.825184	24	24
49.0	14.865438	25	25
50.0	14.903086	25	25
51.0	14.938297	18	18
52.0	14.971228	30	30
53.0	15.002028	16	16
54.0	15.030833	23	23
55.0	15.057774	19	19
56.0	15.082971	28	28
57.0	15.106536	33	33
58.0	15.128576	22	22
59.0	15.149189	20	20
60.0	15.168468	24	24
61.0	15.186498	27	27
62.0	15.203362	29	29
63.0	15.219133	13	13
64.0	15.233884	28	28
65.0	15.247679	24	24
66.0	15.260582	19	19
67.0	15.272649	22	22
68.0	15.283936	27	27
69.0	15.294491	14	14
70.0	15.304363	14	14
71.0	15.313596	14	14
72.0	15.322232	17	17
73.0	15.330308	11	11
74.0	15.337861	12	12
75.0	15.344926	16	16
76.0	15.351533	4	4
77.0	15.357712	12	12
78.0	15.363492	8	8
79.0	15.368897	8	8
80.0	15.373952	5	5
81.0	15.37868	8	8
82.0	15.383102	12	12
83.0	15.387238	6	6
84.0	15.391106	12	12
85.0	15.394723	11	11
86.0	15.398107	4	4
87.0	15.401271	4	4
88.0	15.40423	6	6
89.0	15.406998	11	11
90.0	15.409587	2	2
91.0	15.412008	5	5
92.0	15.414272	5	5
93.0	15.41639	3	3
94.0	15.418371	3	3
95.0	15.420223	3	3
96.0	15.421956	2	2
97.0	15.423576	2	2
98.0	15.425092	2	2
99.0	15.426509	4	4
100.0	15.427835	2	2
102.0	0	3	3
103.0	0	2	2
104.0	0	1	1
105.0	0	2	2
106.0	0	7	7
107.0	0	2	2
108.0	0	3	3
109.0	0	3	3
110.0	0	3	3
111.0	0	3	3
112.0	0	1	1
113.0	0	2	2
114.0	0	4	4
115.0	0	2	2
116.0	0	5	5
117.0	0	1	1
118.0	0	1	1
119.0	0	1	1
121.0	0	3	3
122.0	0	3	3
123.0	0	6	6
124.0	0	2	2
125.0	0	1	1
126.0	0	5	5
127.0	0	1	1
128.0	0	4	4
129.0	0	2	2
131.0	0	1	1
132.0	0	1	1
133.0	0	1	1
134.0	0	1	1
135.0	0	3	3
136.0	0	1	1
137.0	0	1	1
138.0	0	1	1
141.0	0	1	1
142.0	0	1	1
143.0	0	4	4
144.0	0	2	2
145.0	0	1	1
146.0	0	2	2
147.0	0	3	3
149.0	0	2	2
150.0	0	3	3
152.0	0	1	1
153.0	0	1	1
154.0	0	1	1
155.0	0	2	2
156.0	0	1	1
157.0	0	1	1
160.0	0	2	2
161.0	0	1	1
162.0	0	1	1
163.0	0	2	2
165.0	0	2	2
167.0	0	2	2
168.0	0	1	1
173.0	0	1	1
174.0	0	1	1
178.0	0	1	1
179.0	0	1	1
183.0	0	1	1
186.0	0	1	1
188.0	0	1	1
189.0	0	1	1
190.0	0	1	1
191.0	0	2	2
195.0	0	1	1
196.0	0	1	1
199.0	0	2	2
200.0	0	2	2
201.0	0	1	1
213.0	0	1	1
214.0	0	1	1
220.0	0	1	1
221.0	0	1	1
222.0	0	1	1
228.0	0	1	1
232.0	0	1	1
233.0	0	1	1
235.0	0	1	1
239.0	0	1	1
240.0	0	1	1
241.0	0	1	1
245.0	0	1	1
248.0	0	1	1
255.0	0	1	1
259.0	0	1	1
273.0	0	1	1