## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates  --INPUT SRR7062655.bam --OUTPUT SRR7062655.md.bam --METRICS_FILE SRR7062655.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true  --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Oct 25 12:08:01 UTC 2021

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062655	1622	958977	721	1622	330	43234	0	0.045217	10313454

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	874335	874335
2.0	1.911209	39702	39702
3.0	2.741511	1614	1614
4.0	3.498089	75	75
5.0	4.18749	11	11
6.0	4.815678	3	3
7.0	5.388088	1	1
8.0	5.909674	2	2
9.0	6.384948	0	0
10.0	6.818021	0	0
11.0	7.212641	0	0
12.0	7.572223	0	0
13.0	7.899877	0	0
14.0	8.198438	0	0
15.0	8.47049	0	0
16.0	8.718386	0	0
17.0	8.94427	0	0
18.0	9.150099	0	0
19.0	9.337651	0	0
20.0	9.508551	0	0
21.0	9.664276	0	0
22.0	9.806174	0	0
23.0	9.935473	0	0
24.0	10.053292	0	0
25.0	10.160649	0	0
26.0	10.258473	0	0
27.0	10.347612	0	0
28.0	10.428836	0	0
29.0	10.502848	0	0
30.0	10.570289	0	0
31.0	10.631741	0	0
32.0	10.687737	0	0
33.0	10.738761	0	0
34.0	10.785255	0	0
35.0	10.82762	0	0
36.0	10.866224	0	0
37.0	10.9014	0	0
38.0	10.933452	0	0
39.0	10.962659	0	0
40.0	10.989272	0	0
41.0	11.013523	0	0
42.0	11.03562	0	0
43.0	11.055755	0	0
44.0	11.074102	0	0
45.0	11.09082	0	0
46.0	11.106054	0	0
47.0	11.119935	0	0
48.0	11.132584	0	0
49.0	11.144109	0	0
50.0	11.154612	0	0
51.0	11.164181	0	0
52.0	11.172901	0	0
53.0	11.180847	0	0
54.0	11.188087	0	0
55.0	11.194685	0	0
56.0	11.200696	0	0
57.0	11.206174	0	0
58.0	11.211165	0	0
59.0	11.215714	0	0
60.0	11.219858	0	0
61.0	11.223634	0	0
62.0	11.227075	0	0
63.0	11.230211	0	0
64.0	11.233068	0	0
65.0	11.235672	0	0
66.0	11.238044	0	0
67.0	11.240205	0	0
68.0	11.242175	0	0
69.0	11.24397	0	0
70.0	11.245605	0	0
71.0	11.247096	0	0
72.0	11.248454	0	0
73.0	11.249691	0	0
74.0	11.250818	0	0
75.0	11.251846	0	0
76.0	11.252782	0	0
77.0	11.253635	0	0
78.0	11.254412	0	0
79.0	11.255121	0	0
80.0	11.255766	0	0
81.0	11.256354	0	0
82.0	11.25689	0	0
83.0	11.257378	0	0
84.0	11.257823	0	0
85.0	11.258229	0	0
86.0	11.258598	0	0
87.0	11.258935	0	0
88.0	11.259241	0	0
89.0	11.259521	0	0
90.0	11.259775	0	0
91.0	11.260008	0	0
92.0	11.260219	0	0
93.0	11.260412	0	0
94.0	11.260587	0	0
95.0	11.260747	0	0
96.0	11.260893	0	0
97.0	11.261026	0	0
98.0	11.261147	0	0
99.0	11.261257	0	0
100.0	11.261358	0	0