## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates  --INPUT SRR7062654.bam --OUTPUT SRR7062654.md.bam --METRICS_FILE SRR7062654.bam.metrics --ASSUME_SORT_ORDER coordinate --TMP_DIR . --CREATE_INDEX true  --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --REMOVE_DUPLICATES false --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Oct 25 12:08:01 UTC 2021

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
SRR7062654	1643	992311	698	1643	278	27581	0	0.027912	17518388

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	937845	937845
2.0	1.94493	26206	26206
3.0	2.837824	663	663
4.0	3.681546	15	15
5.0	4.478805	1	1
6.0	5.232159	0	0
7.0	5.944027	0	0
8.0	6.616692	0	0
9.0	7.252313	0	0
10.0	7.852931	0	0
11.0	8.420474	0	0
12.0	8.956762	0	0
13.0	9.463517	0	0
14.0	9.942365	0	0
15.0	10.394844	0	0
16.0	10.822404	0	0
17.0	11.226419	0	0
18.0	11.608185	0	0
19.0	11.968927	0	0
20.0	12.309804	0	0
21.0	12.631908	0	0
22.0	12.936275	0	0
23.0	13.223879	0	0
24.0	13.495646	0	0
25.0	13.752447	0	0
26.0	13.995106	0	0
27.0	14.224401	0	0
28.0	14.44107	0	0
29.0	14.645806	0	0
30.0	14.839268	0	0
31.0	15.022076	0	0
32.0	15.194817	0	0
33.0	15.358045	0	0
34.0	15.512284	0	0
35.0	15.658029	0	0
36.0	15.795748	0	0
37.0	15.925883	0	0
38.0	16.048852	0	0
39.0	16.165049	0	0
40.0	16.274847	0	0
41.0	16.378598	0	0
42.0	16.476636	0	0
43.0	16.569274	0	0
44.0	16.656812	0	0
45.0	16.739528	0	0
46.0	16.81769	0	0
47.0	16.891547	0	0
48.0	16.961337	0	0
49.0	17.027283	0	0
50.0	17.089598	0	0
51.0	17.148482	0	0
52.0	17.204122	0	0
53.0	17.256699	0	0
54.0	17.30638	0	0
55.0	17.353325	0	0
56.0	17.397685	0	0
57.0	17.439602	0	0
58.0	17.479211	0	0
59.0	17.516638	0	0
60.0	17.552005	0	0
61.0	17.585423	0	0
62.0	17.617002	0	0
63.0	17.646841	0	0
64.0	17.675037	0	0
65.0	17.701681	0	0
66.0	17.726857	0	0
67.0	17.750646	0	0
68.0	17.773126	0	0
69.0	17.794368	0	0
70.0	17.81444	0	0
71.0	17.833406	0	0
72.0	17.851328	0	0
73.0	17.868263	0	0
74.0	17.884266	0	0
75.0	17.899387	0	0
76.0	17.913676	0	0
77.0	17.927177	0	0
78.0	17.939936	0	0
79.0	17.951991	0	0
80.0	17.963383	0	0
81.0	17.974147	0	0
82.0	17.984319	0	0
83.0	17.99393	0	0
84.0	18.003012	0	0
85.0	18.011594	0	0
86.0	18.019703	0	0
87.0	18.027366	0	0
88.0	18.034607	0	0
89.0	18.041449	0	0
90.0	18.047914	0	0
91.0	18.054024	0	0
92.0	18.059796	0	0
93.0	18.065251	0	0
94.0	18.070406	0	0
95.0	18.075276	0	0
96.0	18.079879	0	0
97.0	18.084228	0	0
98.0	18.088337	0	0
99.0	18.09222	0	0
100.0	18.09589	0	0