R version 4.0.2 (2020-06-22) -- "Taking Off Again" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-conda_cos6-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(ASCAT); help(package='ASCAT') Loading required package: RColorBrewer Warning message: package ‘RColorBrewer’ was built under R version 4.0.5 Information on package ‘ASCAT’ Description: Package: ASCAT Type: Package Title: Allele-Specific Copy Number Analysis of Tumours Version: 2.5.2 Date: 2018-08-29 Authors@R: c(person("Peter", "Van Loo", role=c("aut","cre"), email="Peter.VanLoo@crick.ac.uk"), person("Gro", "Nielsen", role="ctb"), person("Jiqiu","Cheng", role="ctb"), person("Stefan","Dentro", role="ctb"), person("Edith","Ross", role="ctb"), person("Kerstin","Haase", role="ctb")) Author: Peter Van Loo [aut, cre], Gro Nielsen [ctb], Jiqiu Cheng [ctb], Stefan Dentro [ctb], Edith Ross [ctb], Kerstin Haase [ctb] Maintainer: Kerstin Haase Description: R package of ASCAT as published in http://www.ncbi.nlm.nih.gov/ pubmed/20837533 Depends: R (>= 2.13.0), RColorBrewer, grDevices, graphics, stats, utils License: GPL-3 LazyLoad: yes RoxygenNote: 6.1.0 Built: R 4.0.2; ; 2020-08-13 08:42:19 UTC; unix Index: ascat.GCcorrect ascat.GCcorrect ascat.asmultipcf Allele-specific segmentation of multiple samples ascat.aspcf ascat.aspcf ascat.loadData ascat.loadData ascat.plotAscatProfile ascat.plotAscatProfile ascat.plotGenotypes ascat.plotGenotypes ascat.plotNonRounded ascat.plotNonRounded ascat.plotRawData ascat.plotRawData ascat.plotSegmentedData ascat.plotSegmentedData ascat.plotSunrise ascat.plotSunrise ascat.predictGermlineGenotypes ascat.predictGermlineGenotypes ascat.runAscat ascat.runAscat > >