RPSBLAST 2.9.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: COG.3-28-17 4,873 sequences; 1,498,208 total letters Query= BifidoAdolescentis.s2#1#35132#ORF1 Crossover junction endodeoxyribonuclease RuvC Length=193 Score E Sequences producing significant alignments: (Bits) Value CDD:223887 COG0817, RuvC, Holliday junction resolvasome, endonucl... 119 1e-35 >CDD:223887 COG0817, RuvC, Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]. Length=160 Score = 119 bits (301), Expect = 1e-35, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%), Gaps = 1/134 (1%) Query 4 LGVDPGLTRCGVGVIEAGAYRRLSFIHVDVVRSDPKTSQDLRLLAIYNGLVEKIERFAPD 63 LG+DPGL R G GVIE R+LS++ V+R+ RL +Y+GL E ++ + PD Sbjct 1 LGIDPGLRRTGYGVIEVEG-RQLSYLASGVIRTSSDAPLAERLKQLYDGLSEVLDEYQPD 59 Query 64 AVSIERVFAQENRNTVLGTAQAAGLAMLAAAQRGIPVALHTPTESKLAITGNGKAEKIQM 123 V+IE+VF +N ++ L QA G+A+LAAA+RG+PV +TP + K A+ GNGKA+K Q+ Sbjct 60 EVAIEQVFVNKNADSALKLGQARGVALLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQV 119 Query 124 ERMVARILGLNTLP 137 + MV R+LGL P Sbjct 120 QHMVKRLLGLEEPP 133 Lambda K H a alpha 0.320 0.134 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0751 0.140 1.90 42.6 43.6 Effective search space used: 126909474 Query= BifidoAdolescentis.s2#1#35132#ORF2 Holliday junction ATP-dependent DNA helicase RuvA Length=205 Score E Sequences producing significant alignments: (Bits) Value CDD:223705 COG0632, RuvA, Holliday junction resolvasome, DNA-bind... 180 2e-58 >CDD:223705 COG0632, RuvA, Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]. Length=201 Score = 180 bits (458), Expect = 2e-58, Method: Composition-based stats. Identities = 77/188 (41%), Positives = 115/188 (61%), Gaps = 5/188 (3%) Query 1 MIGMLRGHVESVDAVSAIIEVGGVGYEVRMPSADLASM-HAGQEIKVYTSLNVSQDAITL 59 MIG LRG V + +IEV GVGYE+ +P LA + G+E+K++T L V +DA L Sbjct 1 MIGYLRGKVTEKNPDYIVIEVNGVGYEINVPMRTLAELPEVGEEVKLFTHLVVREDAHLL 60 Query 60 FGFGTLASKRMFLQLQKVSGIGPKVALSLLSTLPPDRLARAVADGDATALAKAPGLGKKG 119 +GF T + +F L V+GIGPK+AL++LS L P+ LA+A+A+ D AL+K PG+GKK Sbjct 61 YGFLTEEERELFRLLISVNGIGPKLALAILSNLDPEELAQAIANEDVKALSKIPGIGKKT 120 Query 120 AQKIILELKG---SIDLSQIEGSSATASTPEDTGA-EQVVEGLMSLGWHQQDAAHAVQTV 175 A++I+LELKG + + S E + A E+ VE L++LG+ +++ AV+ V Sbjct 121 AERIVLELKGKLAAFLKGDGGSPAEDLSLDESSPALEEAVEALVALGYKEKEIKKAVKKV 180 Query 176 CADNQIET 183 +N Sbjct 181 LKENPDAD 188 Lambda K H a alpha 0.315 0.131 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 138546000 Query= BifidoAdolescentis.s2#1#35132#ORF3 Holliday junction ATP-dependent DNA helicase RuvB Length=362 Score E Sequences producing significant alignments: (Bits) Value CDD:225164 COG2255, RuvB, Holliday junction resolvasome, helicase... 496 1e-178 CDD:225165 COG2256, MGS1, ATPase related to the helicase subunit ... 80.4 2e-17 CDD:224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) ... 72.2 7e-15 CDD:223786 COG0714, COG0714, MoxR-like ATPases [General function ... 70.2 2e-14 >CDD:225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]. Length=332 Score = 496 bits (1279), Expect = 1e-178, Method: Composition-based stats. Identities = 183/329 (56%), Positives = 247/329 (75%), Gaps = 0/329 (0%) Query 25 RMVSAAPVGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPG 84 R++S E + LRP L+ FIGQ ++K QLQ+F+ AA+KR DH+LL GPPG Sbjct 3 RIISPEKQEEEMKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPG 62 Query 85 LGKTTLAMIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFIDEIHRLPRAAEEL 144 LGKTTLA I+ANEL V +++TSGPA++ GDLA+IL++L+ G+VLFIDEIHRL A EE+ Sbjct 63 LGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEV 122 Query 145 LYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSPLRARFGFTAHLDFYP 204 LY AMEDFR+D+++GKGP A SI L LP FT+IGATTR GML +PLR RFG L+FY Sbjct 123 LYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYT 182 Query 205 HEELEKLIERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLRRVRDWAIVHDLESVRPD 264 EELE++++RS+ +LGI++++ AA ++A RSRGTPRIANRLLRRVRD+A V + D Sbjct 183 VEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRD 242 Query 265 DVKEALALYQIDTEGLDRLDIAVLKAIVTNFNGGPVGLNNLAAMVGEESETVETVCEPYL 324 +AL + +D GLD +D L+A++ F GGPVGL+ +AA +GE+ +T+E V EPYL Sbjct 243 IADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 Query 325 VREGFLIRTPKGRVATRKAWEHLGITPDE 353 +++GF+ RTP+GR+AT KA+EHLG+ P E Sbjct 303 IQQGFIQRTPRGRIATAKAYEHLGLPPPE 331 >CDD:225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]. Length=436 Score = 80.4 bits (199), Expect = 2e-17, Method: Composition-based stats. Identities = 62/241 (26%), Positives = 95/241 (39%), Gaps = 56/241 (23%) Query 25 RMVSAAPVGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHI---LLAG 81 + + P++ E LRP L+ +GQ L + +R V H+ +L G Sbjct 2 SLDLSDNEFRMPLA-ERLRPKSLDEVVGQEHLLGE-----GKPLRRAVEAGHLHSMILWG 55 Query 82 PPGLGKTTLAMIVANELEVPIR----VTSGPA-IQHAGDLASILSSLDAGEVLFIDEIHR 136 PPG GKTTLA ++A VTSG ++ + A L +LF+DEIHR Sbjct 56 PPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHR 115 Query 137 LPRAAEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPS-----PLR 191 +A ++ L +E+ + +IGATT PS L Sbjct 116 FNKAQQDALLPHVENGTI--------------------ILIGATTEN---PSFELNPALL 152 Query 192 AR---FGFTAHLDFYPHEELEKLIERSSAVLG-------IQLEDGAARQLAMRSRGTPRI 241 +R F E+++KL++R+ I L++ A L S G R Sbjct 153 SRARVFELKPLSS----EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 Query 242 A 242 A Sbjct 209 A 209 >CDD:224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length=368 Score = 72.2 bits (177), Expect = 7e-15, Method: Composition-based stats. Identities = 68/253 (27%), Positives = 109/253 (43%), Gaps = 27/253 (11%) Query 37 VSDEELRPHILEGFIGQPRLKAQLQLFL----DAARKRDVPPDHILLAGPPGLGKTTLAM 92 E + L+ IGQ K + +L + + R D P ++L GPPG GKT +A Sbjct 110 EDREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAK 169 Query 93 IVANELEVPIRVTSGPAI--QHAGDLASILSSL------DAGEVLFIDEIHR--LPRAAE 142 +ANE +VP+ + + +H GD A + L A ++FIDE+ L R + Sbjct 170 ALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ 229 Query 143 ELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTV--IGATTREGMLPSPLRARFGFTAHL 200 EL R DV + + V I AT R +L +R+RF Sbjct 230 EL--------RGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEF 281 Query 201 DFYPHEELEKLIERSSAVLGIQLEDGAARQLAMRSRGTP--RIANRLLRRVRDWAIVHDL 258 EE +++E + + + D R LA +++G I ++L+ AI D Sbjct 282 KLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR 340 Query 259 ESVRPDDVKEALA 271 E V +D+++AL Sbjct 341 EKVEREDIEKALK 353 >CDD:223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]. Length=329 Score = 70.2 bits (172), Expect = 2e-14, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 101/294 (34%), Gaps = 42/294 (14%) Query 25 RMVSAAPVGNEPVSDEELRPHILEGFIGQPRLKAQLQLFLDAARKRDVPPDHILLAGPPG 84 AP+ ++R + + +G + L H+LL GPPG Sbjct 1 LEEIMAPLERVAEILGKIRSELEKVVVGDEEVI--ELALLALLAGG-----HVLLEGPPG 53 Query 85 LGKTTLAMIVANELEVP---IRVTSG---------PAIQHAGDLASILSSLD------AG 126 +GKT LA +A L +P I+ T A + Sbjct 54 VGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 Query 127 EVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREG-- 184 +L +DEI+R P + L A+E+ +V V + LP ++ AT G Sbjct 114 VILLLDEINRAPPEVQNALLEALEERQVTV-------PGLTTIRLPPPFIVIATQNPGEY 166 Query 185 ----MLPSPLRARFGFTAHLDFYPHEELEKLIERSSAVLGIQLEDGAARQLAMRSRGTPR 240 LP L RF ++D+ EE E++I V G+ D + + S Sbjct 167 EGTYPLPEALLDRFLLRIYVDYPDSEEEERIILAR--VGGVDELDLESLVKPVLSDEELL 224 Query 241 IANRLLRRVR-DWAIVHDL-ESVRPDDVKEALALYQIDTEGLDRLDIAVLKAIV 292 + +++V ++ + V +AL L L A++ Sbjct 225 RLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALL 278 Lambda K H a alpha 0.318 0.137 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 297839880 Query= BifidoAdolescentis.s2#1#35132#ORF4 hypothetical protein Length=137 Score E Sequences producing significant alignments: (Bits) Value CDD:224775 COG1862, YajC, Preprotein translocase subunit YajC [In... 66.9 2e-16 >CDD:224775 COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion]. Length=97 Score = 66.9 bits (164), Expect = 2e-16, Method: Composition-based stats. Identities = 26/82 (32%), Positives = 48/82 (59%), Gaps = 2/82 (2%) Query 1 MDILFLVVLIVVMFGMM-FWQSKKAKQQQAERQNFRSSLQPGTEVITIGGIIGKVVSVDT 59 L L++ +V++F + F + +++ E Q +SL+ G EV+TIGGI+G V V Sbjct 6 GSGLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNSLKKGDEVVTIGGIVGTVTKVGD 65 Query 60 EYEEIVVDSEGSQLRFGFNAIS 81 + EI + +G++++F AI+ Sbjct 66 DTVEIELG-DGTKIKFEKEAIA 86 Lambda K H a alpha 0.314 0.134 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 70229446 Query= BifidoAdolescentis.s2#1#35132#ORF5 Adenine phosphoribosyltransferase Length=193 Score E Sequences producing significant alignments: (Bits) Value CDD:223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferas... 157 3e-50 >CDD:223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]. Length=179 Score = 157 bits (400), Expect = 3e-50, Method: Composition-based stats. Identities = 76/171 (44%), Positives = 97/171 (57%), Gaps = 4/171 (2%) Query 21 YLVSKIRTIPGFPKEGILFRDFMPVLADARAFGILMGALEAALPVDVDDFDMVVGLEARG 80 L IR IP FPK GILF D +L D L+ L D D + +EARG Sbjct 7 LLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIV--TIEARG 64 Query 81 FLFGPALAARLGKGFIAVRKAGKLPPETMSQSYDLEYGQASMEIETNVVHEGVRVLIVDD 140 A+A LG F+ VRK GKLP E++ ++Y LEYG ++E+ + + G RVLIVDD Sbjct 65 IPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDD 124 Query 141 LIATGGTANAARSLIEKCGGVVAGFSFVMELTGIDGMKSLGD--YPTSSLV 189 L+ATGGTA A L+E+ G V G +FV+EL +DG K L D P SLV Sbjct 125 LLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKKLEDDGLPVFSLV 175 Lambda K H a alpha 0.321 0.139 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126909474 Query= BifidoAdolescentis.s2#1#35132#ORF6 Succinate--CoA ligase [ADP-forming] subunit beta Length=395 Score E Sequences producing significant alignments: (Bits) Value CDD:223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [... 388 8e-135 >CDD:223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]. Length=387 Score = 388 bits (999), Expect = 8e-135, Method: Composition-based stats. Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 18/387 (5%) Query 1 MDLYEYQARELLEEQGIPTPKAIFAQNSHEVAEAADQIG-YPNVIKAQVKIGHRGQAGGV 59 M+L+EYQA+EL + GIP P A + E EAA ++G P V+KAQV G RG+AGGV Sbjct 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGV 60 Query 60 KLAKTRDESILASEDIL----PMTIHKHKVSGVLVAEAKNILH-EYYVSISVDRSSRDFD 114 KLAK+ +E+ A+E+IL I V+ VLV EA +I+ EYY+SI +DRSSR Sbjct 61 KLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPV 120 Query 115 VLATANGGTEVEEIAKEHPESVKRLHIDALDDFDLEAATKMAESIGFYHADVDQAAQILL 174 ++A+ GG ++EE+A++ PE + ++ +D L A ++A +G V Q A I+ Sbjct 121 LMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLEGELVKQVADIIK 180 Query 175 KMWRCFKENDATLVEINPLAKIGDPDDESSKSLCALDAKISLDDNASFRHDGWKRFTDPI 234 K+++ F E DATLVEINPL D D + ALDAKI+LDDNA FRH D Sbjct 181 KLYKLFVEKDATLVEINPLVVTPDGGD-----VLALDAKITLDDNALFRHPDLAELRDES 235 Query 235 YVDPYEQKAREHGLHYVHLKGSVGVIGNGAGLVMSSLDAVSGAGEDQGTNVKPANFLDIG 294 DP E +A +GL+YV L G++G I NGAGL M+++D V G KPANFLD+G Sbjct 236 EEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYG------GKPANFLDVG 289 Query 295 GGASAEVMSNSLGIVLSDPQVESVLINVYGGITSCEQVAKGILEALDELGSSKPIVVRFD 354 GGA+AE + + ++LSDP V+++ +N++GGIT C++VA+GI+ AL E+G + P+VVR + Sbjct 290 GGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLE 349 Query 355 GNAAAEGLNILAQAGRANLHVAQTMEE 381 G EG ILA++G N+ A ++E Sbjct 350 GTNVEEGKRILAESGL-NIIAADDLDE 375 Lambda K H a alpha 0.314 0.132 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 333451170 Query= BifidoAdolescentis.s2#1#35132#ORF7 Succinate--CoA ligase [ADP-forming] subunit alpha Length=307 Score E Sequences producing significant alignments: (Bits) Value CDD:223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit ... 350 1e-122 CDD:223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [E... 73.5 2e-15 >CDD:223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]. Length=293 Score = 350 bits (900), Expect = 1e-122, Method: Composition-based stats. Identities = 157/307 (51%), Positives = 206/307 (67%), Gaps = 19/307 (6%) Query 1 MTLFIEDGAPVIVQGMTGHQGMTHTARMLKAGTNIVGGVNARKAGLDVTFPEAKNGEDAT 60 M++ + VIVQG+TG QG HT +ML GT IVGGV K G + Sbjct 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTIL----------G 50 Query 61 IHVFANCSEAIEATGAKASVVFVPPRFAKDAVVEAIEAGIELIVVITEGIPVADSAYFVE 120 + VF EA++ TGA ASV+FVPP FA DA++EAI+AGI+L+V+ITEGIPV D Sbjct 51 LPVFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKR 110 Query 121 LALRKGVRIVGPNCPGLLTLPSSKDAKGCNLGIIPDGIVSRGPLGLVSKSGTLTYQLMGE 180 A KG R++GPNCPG++T C +GI+P I G +G+VS+SGTLTY+ + + Sbjct 111 YAREKGTRLIGPNCPGIIT------PGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQ 164 Query 181 LSD--IGFTACLGAGGDPIVGTTLQEALEAFENDEATKAVVMIGEIGGSAEQDAAKWASE 238 L++ +G + +G GGDPI GT+ +ALE FE D T+A+VMIGEIGG AE++AA++ Sbjct 165 LTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA 224 Query 239 HMT-KPVVAYIAGFTAPEGKQMGHAGAIVSGGKGTAQDKKEALEAVGIRVGRTPGQTAEI 297 + T KPVVAYIAG TAPEGK+MGHAGAIVSGGKGTA+ K ALEA G++V TP + E+ Sbjct 225 NATRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGEL 284 Query 298 MREVLAS 304 + EVL Sbjct 285 LLEVLKG 291 >CDD:223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]. Length=598 Score = 73.5 bits (181), Expect = 2e-15, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 86/202 (43%), Gaps = 25/202 (12%) Query 78 ASVVFVPPRFAKDAVVEAIEAGIELIVVITEGIPVADSAY------FVELALRKGVRIVG 131 +V+ VP + + V E E G++ +VI+ G A VE A + G+RI+G Sbjct 69 LAVIVVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIG 128 Query 132 PNCPGLLTLPSSKDAKGCNLGIIPD-GIVSRGPLGLVSKSGTLTYQL--MGELSDIGFTA 188 PNC GL+ G N P G+ G VS+SG +++ + +GF+ Sbjct 129 PNCLGLINPII-----GLNATFDPVFGLGRGGGGAFVSQSGAVSFAILDWANEDGMGFSI 183 Query 189 C--LGAGGDPIVGTTLQEALEAFENDEATKAVVMIGEIGGSAEQD--AAKWASEHMTKPV 244 LG D + LE +D TKA+ + E + AA+ A KP+ Sbjct 184 KVSLGNAAD----RDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERK--KPI 237 Query 245 VAYIAGFTAPEGKQM-GHAGAI 265 +A AG + K H G++ Sbjct 238 IALKAGRSEAGAKAAASHTGSL 259 Lambda K H a alpha 0.315 0.134 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 242819348 Query= BifidoAdolescentis.s2#1#35132#ORF8 hypothetical protein Length=462 ***** No hits found ***** Lambda K H a alpha 0.324 0.136 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 399949616 Query= BifidoAdolescentis.s2#1#35132#ORF9 Bifunctional purine biosynthesis protein PurH Length=542 Score E Sequences producing significant alignments: (Bits) Value CDD:223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase... 724 0.0 >CDD:223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]. Length=515 Score = 724 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 265/540 (49%), Positives = 344/540 (64%), Gaps = 29/540 (5%) Query 7 PIRRALVSVFHKEGIEVLAEAFIKAGTEVVSTGSTAKRLAELGVKVTEVSEVTGFPECLD 66 I+RAL+SV K GI A+A ++ G E++STG TAK LAE G+ VTEVS++TGFPE LD Sbjct 1 MIKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLD 60 Query 67 GRVKTLDPHIHAGILADMTNPDHASQLEKFGIKPFDLVVVNLYPFADTV-RSGADEAATI 125 GRVKTL P IH GILA +H + LE+ GI+P DLVVVNLYPF +TV + G + Sbjct 61 GRVKTLHPKIHGGILARRDKDEHMAALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAV 120 Query 126 EKIDIGGPSMVRGAAKNSATVAIITDPNDYALVASRIENGEGFSLDERRWLAGKAFAHTA 185 E IDIGGP+M+R AAKN V ++ DP DYA V ++ SL R+ LA KAF HTA Sbjct 121 ENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKANGELSLATRKRLAAKAFEHTA 180 Query 186 AYDATINEWTAKHWPKPASIEQPVSEGETEVNEAKFPATFTRTWDRAHVLRYGENPHQQA 245 AYDA I + +E+ +FP ++ + LRYGENPHQ A Sbjct 181 AYDAAIANYF------------------SELLGGEFPEQLNLSFTKKQDLRYGENPHQSA 222 Query 246 SLYLDPLNQNGFAHAEQLGGKPMSYNNYVDADAAWRAVWDF-APQIAVAVVKHNNPCGLA 304 + Y D + G A A+QL GK +SYNN DADAAW V +F P A A+VKH NPCG+A Sbjct 223 AFYRDGNAKGGVATAKQLQGKELSYNNIADADAAWELVKEFDEPGPACAIVKHANPCGVA 282 Query 305 IGATVAEAHKKAHACDPMSAYGGVIAANSKVTMEMAESVRPIFTEVIVAPDYDADALELL 364 +G T+AEA+K+A+ DP SA+GG+IA N +V +E AE++ IF EVI+AP Y +ALE+L Sbjct 283 VGDTIAEAYKRAYEADPTSAFGGIIALNREVDVETAEAISKIFLEVIIAPSYTEEALEIL 342 Query 365 QTKKKNLRILKVSE--PPKTKTQFRQIDGGLLVQSTDLIDAPGDDPNAWKLVSGEPADAE 422 KKKNLR+L + P +F+++ GGLLVQ D + K+V+ + Sbjct 343 -AKKKNLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMIDEAE---LKVVTKRQPTEQ 398 Query 423 TVRDLVFAWRAIRCVKSNAILIAHDQATVGIGMGQVNRVDSANLSVERANTLADGANRTK 482 + DL+FAW+ ++ VKSNAI+ A D TVGIG GQ++RVDSA ++ E+A D R Sbjct 399 ELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKA---GDAGLRAH 455 Query 483 GAVAASDAFFPFADGAEILINAGVKAIVQPGGSIRDEEVFEAARKAGVTMYVTGTRHFFH 542 GAV ASDAFFPF DG + AG+KAI+QPGGSIRD+EV AA + G+ M TG RHF H Sbjct 456 GAVLASDAFFPFPDGIDAAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH 515 Lambda K H a alpha 0.316 0.132 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 482223483 Query= BifidoAdolescentis.s2#1#35132#ORF10 hypothetical protein Length=94 ***** No hits found ***** Lambda K H a alpha 0.329 0.143 0.441 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36927479 Query= BifidoAdolescentis.s2#1#35132#ORF11 Aquaporin Z Length=311 Score E Sequences producing significant alignments: (Bits) Value CDD:223653 COG0580, GlpF, Glycerol uptake facilitator and related... 96.9 1e-24 >CDD:223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]. Length=241 Score = 96.9 bits (242), Expect = 1e-24, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 95/245 (39%), Gaps = 19/245 (8%) Query 17 PLALRAGAELVGSFIICFAIYSICT----LGSAIYGVNMAFIALLTGLVYAAATLIFGTI 72 L + AE +G+F++ F GS G IAL GL A FG I Sbjct 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGI 62 Query 73 SGAQFNPAVSVAAMLSGKTHVLDGVLYIIAQVLGGIGAGAAIRFLLPTSEQVTLKIWLTP 132 SGA NPAV++A + G+ + YI+AQVLG A L + Sbjct 63 SGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAAL------------LYLLYYG 110 Query 133 VINGFDKNSVS-YATLGNYGVSFSITLAIAVELVAGIIIVATALNTTSESGKTNTSHAIA 191 I + + ++ +S+ A +E V ++V L T + +A Sbjct 111 KILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNANAGFAPLA 170 Query 192 MGLAYGVGAAISYPVTGAALNPARATGIAIFAQ--NQGLSQEPLQQLWVFWICPILAAAI 249 +GL P TG A+NPAR G + ++ W+ I PI+ A + Sbjct 171 IGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAIL 230 Query 250 VSLVA 254 +L+ Sbjct 231 GALLY 235 Lambda K H a alpha 0.316 0.130 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 247174852 Query= BifidoAdolescentis.s2#1#35132#ORF12 putative RNA pseudouridine synthase Length=257 Score E Sequences producing significant alignments: (Bits) Value CDD:224108 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate sy... 258 5e-88 >CDD:224108 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]. Length=248 Score = 258 bits (662), Expect = 5e-88, Method: Composition-based stats. Identities = 105/248 (42%), Positives = 155/248 (63%), Gaps = 8/248 (3%) Query 17 EGIRLQKLLAQAGFGSRRKCEEIITDGRVEIDGELITELGTRVDPKRQEVRVDGSRVRVN 76 + +RL K LA+AG GSRR+ E++I +GRV ++G++ T G VDP V VDG R+ + Sbjct 1 DSMRLNKFLAEAGVGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGKRIELK 60 Query 77 PNHVTLALNKPKRVLSAMEDPKGRYTLRD---IVGDKYERIFHMGRLDYDSEGLILMTND 133 V L LNKP+ +S+ ED +GR T+ D + +R+F +GRLD D+EGL+L+TND Sbjct 61 EERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPERLPRKKRLFPVGRLDKDTEGLLLLTND 120 Query 134 GELSQHVMHPKYEVEKTYIATLEGRISGQVCRRLVTTGVKLDDGWIKLDRCAILD--SSR 191 GEL+ +MHP EVEK Y+ +EG ++ + +L GV LDDG K + A L+ + Sbjct 121 GELAHRLMHPSSEVEKEYLVRVEGPVTEEDLEKL-RKGVTLDDGETKPAKPASLEKEPGK 179 Query 192 ESTLVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLGD--LKSGTYRVLSQAEVR 249 ++ +++ L G+NR VRR+F ++G V RL R +IGP+ LGD L G +R L+ E+ Sbjct 180 NNSWLRITLTEGRNRQVRRMFEAVGLEVLRLKRIRIGPLSLGDLPLPPGEWRELTLEEIA 239 Query 250 SLSKAVGL 257 L K V L Sbjct 240 QLRKLVEL 247 Lambda K H a alpha 0.319 0.138 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 192258850 Query= BifidoAdolescentis.s2#1#35132#ORF13 GTPase Der Length=709 Score E Sequences producing significant alignments: (Bits) Value CDD:224082 COG1160, COG1160, Predicted GTPases [General function ... 515 2e-179 CDD:223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport ... 183 2e-54 CDD:223561 COG0486, ThdF, Predicted GTPase [General function pred... 116 1e-28 CDD:224081 COG1159, Era, GTPase [General function prediction only] 103 3e-25 CDD:223296 COG0218, COG0218, Predicted GTPase [General function p... 75.3 2e-16 CDD:223447 COG0370, FeoB, Fe2+ transport system protein B [Inorga... 62.7 5e-11 CDD:224083 COG1161, COG1161, Predicted GTPases [General function ... 57.8 9e-10 CDD:225171 COG2262, HflX, GTPases [General function prediction only] 55.7 6e-09 CDD:224025 COG1100, COG1100, GTPase SAR1 and related small G prot... 53.8 7e-09 CDD:226124 COG3596, COG3596, Predicted GTPase [General function p... 53.6 1e-08 >CDD:224082 COG1160, COG1160, Predicted GTPases [General function prediction only]. Length=444 Score = 515 bits (1330), Expect = 2e-179, Method: Composition-based stats. Identities = 204/442 (46%), Positives = 283/442 (64%), Gaps = 10/442 (2%) Query 274 VLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWET- 332 V+A+VGRPNVGKSTL NR+ GRR A+V DTPGVTRDR+ DAEW G +F L+DTGG + Sbjct 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG 64 Query 333 DVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVDD 392 D + ++ I QA IA++ AD ++ VVDG G+T DE I K+LR + KPV L VNK+D+ Sbjct 65 DEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDN 124 Query 393 RESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPSHLRRVAL 452 ++E L EF+ +G GEP ISA HGRGIG+LLDA L+ L E + ++A+ Sbjct 125 LKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEE-EEETDPIKIAI 183 Query 453 VGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLHKL 512 +GRPNVGKSSL+N + EER +V+D+AGTTRD +D DG ++ IDTAGI+R+ Sbjct 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 Query 513 SGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWDLMD 572 E +S RT AIER+++ L++ DA++ IS+QDL++ +AGR IV+V NKWDL++ Sbjct 244 ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 Query 573 EFDRQRMERLWK---TEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIPTGKL 629 E D ME K + + +A V +SA TG ++L A++ +RI T L Sbjct 304 E-DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLL 362 Query 630 NAFLGKIQAAHPHPLRGGKQPRILFATQASTRPPRFVIFATG--FLEHGYRRYIERCLRE 687 N L A HP P+R G++ +I +ATQ ST PP FV+F L Y+RY+E LR+ Sbjct 363 NRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRK 422 Query 688 EFGFEGSPIQISVNVREKKKRK 709 FGFEG+PI++ ++KK Sbjct 423 AFGFEGTPIRL--EFKKKKNPY 442 >CDD:223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]. Length=222 Score = 183 bits (467), Expect = 2e-54, Method: Composition-based stats. Identities = 95/239 (40%), Positives = 127/239 (53%), Gaps = 30/239 (13%) Query 1 MIRVAIDGPAGVGKSSTSKALAKYYGFAYLDTGAMYRACAWWCMHKGIDLDAETIDEQLV 60 I +AIDGPAG GKS+ +K LA+ GF YLDTGAMYRA A + G+DLD DE + Sbjct 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLD----DEDAL 59 Query 61 TETVGEFFTDGHFDISVDPDDPKVYADDEDISEAIRSSEVSSHVSKVSNIIPVRHVLIAA 120 DIS DD +V+ + ED+SE IR+ EV + SKV+ I VR L+ Sbjct 60 VALA------KELDISFVNDD-RVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKL 112 Query 121 QRAYIAREASVDSFSEGAGIVAEGRDITTVVAPDAEVRILLTAREEVRQARRSGQAVSGV 180 QRA+ G GIVA+GRDI TVV PDAE++I LTA E R RR Q + Sbjct 113 QRAFAK---------NGPGIVADGRDIGTVVFPDAELKIFLTASPEERAERRYKQLQAKG 163 Query 181 GAEN-------VAARDKADS--KVTNFTSAAEGVLTVDNSDLNFGETLDVLVRIVDDAI 230 +E + RD+ DS V AE L +D S L+ E ++ ++ ++ + Sbjct 164 FSEVFEELLAEIKERDERDSNRAVAPLK-PAEDALLLDTSSLSIEEVVEKILELIRQKL 221 >CDD:223561 COG0486, ThdF, Predicted GTPase [General function prediction only]. Length=454 Score = 116 bits (294), Expect = 1e-28, Method: Composition-based stats. Identities = 57/163 (35%), Positives = 88/163 (54%), Gaps = 22/163 (13%) Query 419 RGIGELLDAALDSLKKAER-TSGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVND 477 + LD L + K+ + G +V ++GRPNVGKSSLLN L +R +V D Sbjct 195 EELIAELDELLATAKQGKILREGL-------KVVIIGRPNVGKSSLLNALLGRDRAIVTD 247 Query 478 LAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRLH-----KLSGAEYFSSLRTQAAIERSEL 532 +AGTTRD ++E + ++G +DTAGI R ++ G E R + AIE ++L Sbjct 248 IAGTTRDVIEEDINLNGIPVRLVDTAGI--RETDDVVERI-GIE-----RAKKAIEEADL 299 Query 533 ALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWDLMDEFD 575 L + DASQP+ +DL ++ IV++ NK DL+ + + Sbjct 300 VLFVLDASQPLDKEDLALIELLPKKKPIIVVL-NKADLVSKIE 341 Score = 103 bits (258), Expect = 5e-24, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 17/211 (8%) Query 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGW-ETD 333 + ++GRPNVGKS+L+N +LGR A+V D G TRD + D G +LVDT G ETD Sbjct 220 VVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 Query 334 --VE--GIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNK 389 VE GIE A + + AD V+ V+D L D ++++L KP+ + +NK Sbjct 280 DVVERIGIERAKKAIEE-----ADLVLFVLDASQPLDKEDLALIELLP-KKKPIIVVLNK 333 Query 390 VDDRESEYLTAEFWKMGLGEP-YGISAMHGRGIGELLDAALDSLKKAERTSGFLTPSHLR 448 D S+ K+ G+ ISA G G+ L +A K L S+LR Sbjct 334 A-DLVSKIELESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLR 391 Query 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLA 479 + L+ + L + L E DL Sbjct 392 HIQLLEQ---AAEHLEDALQQLELGQPLDLL 419 >CDD:224081 COG1159, Era, GTPase [General function prediction only]. Length=298 Score = 103 bits (260), Expect = 3e-25, Method: Composition-based stats. Identities = 51/176 (29%), Positives = 84/176 (48%), Gaps = 17/176 (10%) Query 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCG--TDFK----LV 325 G +A++GRPNVGKSTL+N ++G++ ++V P TR+R+ G T V Sbjct 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR------GIVTTDNAQIIFV 59 Query 326 DTGGWETDVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTL 385 DT G + + A+ A++ D ++ VVD G DE I++ L+ PV L Sbjct 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVIL 119 Query 386 AVNKVDDRESEYLTAEF-----WKMGLGEPYGISAMHGRGIGELLDAALDSLKKAE 436 VNK+D + + + + + E ISA+ G + LL+ + L + Sbjct 120 VVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 Score = 81.5 bits (202), Expect = 1e-17, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 86/184 (47%), Gaps = 23/184 (13%) Query 439 SGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL 498 SGF VA++GRPNVGKS+LLN L ++ ++V+ TTR+ + +VT D + Sbjct 6 SGF--------VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQII 57 Query 499 FIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLF--DASQPISDQDLKVMSQAVD 556 F+DT GI + H L E + A ++ L+LF DA + D ++ Q Sbjct 58 FVDTPGIHKPKHALG--ELMNKAARSAL---KDVDLILFVVDADEGWGPGDEFILEQLKK 112 Query 557 AGRCIVLVFNKWDLMDEFDR--QRMERLWKT-EFNRVTWAQRVNLSAKTGWHTNRLANAM 613 ++LV NK D + + + L K F + V +SA G + + L + Sbjct 113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEI-----VPISALKGDNVDTLLEII 167 Query 614 RGAL 617 + L Sbjct 168 KEYL 171 >CDD:223296 COG0218, COG0218, Predicted GTPase [General function prediction only]. Length=200 Score = 75.3 bits (186), Expect = 2e-16, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 34/184 (18%) Query 276 AVVGRPNVGKSTLVNRILGRRA-AVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGG----- 329 A GR NVGKS+L+N + ++ A TPG T+ ++ + + +LVD G Sbjct 28 AFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAK 84 Query 330 --------WETDVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGK 381 W+ IE + +A + V+L++D D D +++ L G Sbjct 85 VPKEVKEKWKKL---IEEYLEKRANLK-----GVVLLIDARHPPKDLDREMIEFLLELGI 136 Query 382 PVTLAVNKVD----DRESEYLTAEFWKMGLGEPYGI-----SAMHGRGIGELLDAALDSL 432 PV + + K D ++ L ++ P S++ +GI EL L+ L Sbjct 137 PVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 Query 433 KKAE 436 K+A+ Sbjct 197 KEAK 200 >CDD:223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]. Length=653 Score = 62.7 bits (153), Expect = 5e-11, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 77/173 (45%), Gaps = 24/173 (14%) Query 274 VLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGG-WET 332 +A+VG PNVGK+TL N + G V + PGVT ++ ++ G + ++VD G + Sbjct 5 TVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 Query 333 DVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKM---LRAAGKPVTLAVNK 389 + +A + D ++ VVD L ER + + L G P+ LA+N Sbjct 64 TAYSEDEKVARDF-LLEGKPDLIVNVVDATN-L----ERNLYLTLQLLELGIPMILALNM 117 Query 390 VDDRES-------EYLTAEFWKMGLGEP-YGISAMHGRGIGELLDAALDSLKK 434 +D+ + E L+ LG P A G G+ EL A ++ + Sbjct 118 IDEAKKRGIRIDIEKLSKL-----LGVPVVPTVAKRGEGLEELKRAIIELAES 165 Score = 54.2 bits (131), Expect = 2e-08, Method: Composition-based stats. Identities = 40/177 (23%), Positives = 68/177 (38%), Gaps = 28/177 (16%) Query 445 SHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAG 504 VALVG PNVGK++L N L + V N G T + + + G + +D G Sbjct 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGN-WPGVTVEKKEGKLKYKGHEIEIVDLPG 59 Query 505 IKRRLHKLSGAEYFSSLRTQAAI-----ERSELALVLFDASQPISDQDLKVMSQAVDAGR 559 + L+ S + A + +L + + DA+ +++L + Q ++ G Sbjct 60 T----YSLTAY----SEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGI 109 Query 560 CIVLVFNKWDLM----DEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANA 612 ++L N D D +++ +L V AK G L A Sbjct 110 PMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVVPTVAKRGEGLEELKRA 158 >CDD:224083 COG1161, COG1161, Predicted GTPases [General function prediction only]. Length=322 Score = 57.8 bits (140), Expect = 9e-10, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 23/168 (14%) Query 349 VQLADAVILVVDGLVGLT---DTDERIVKMLRAAGKPVTLAVNKVDDRESEYLTAEFWKM 405 ++ D V+ VVD L ERIVK KP L +NK D + + WK Sbjct 32 LKSVDVVVEVVDARDPLGTRNPELERIVK-----EKPKLLVLNKAD--LAPKEVTKKWKK 84 Query 406 GLGEPYGISAMH--------GRGIGELLDAALDSLKKAERTSGFLTPSHLRRVALVGRPN 457 + GI + G+ I + L+ + K + G L RV +VG PN Sbjct 85 YFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRK--IRVGVVGYPN 142 Query 458 VGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI 505 VGKS+L+N+L ++ ++ GTT+ + + DG +DT GI Sbjct 143 VGKSTLINRLLGKKVAKTSNRPGTTKG-IQWIKLDDG--IYLLDTPGI 187 Score = 56.6 bits (137), Expect = 2e-09, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 7/55 (13%) Query 277 VVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTD--FKLVDTGG 329 VVG PNVGKSTL+NR+LG++ A + PG T+ +W D L+DT G Sbjct 137 VVGYPNVGKSTLINRLLGKKVAKTSNRPGTTK-----GIQWIKLDDGIYLLDTPG 186 >CDD:225171 COG2262, HflX, GTPases [General function prediction only]. Length=411 Score = 55.7 bits (135), Expect = 6e-09, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 27/181 (15%) Query 449 RVALVGRPNVGKSSLLNQLAHEERTVVND-----LAGTTRDPVDEVVTVDGEDWLFIDTA 503 VALVG N GKS+L N L V D L TTR + DG L DT Sbjct 194 LVALVGYTNAGKSTLFNALT-GADVYVADQLFATLDPTTR----RIELGDGRKVLLTDTV 248 Query 504 GIKRRL-HKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLK----VMSQAVDAG 558 G R L H L A F S T ++ ++L L + DAS P + L+ V+++ Sbjct 249 GFIRDLPHPLVEA--FKS--TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE 304 Query 559 RCIVLVFNKWDLMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALA 618 I+LV NK DL+++ + + L + N V +SAKTG + L + L+ Sbjct 305 IPIILVLNKIDLLEDEE--ILAELERGSPNPVF------ISAKTGEGLDLLRERIIELLS 356 Query 619 S 619 Sbjct 357 G 357 Score = 54.6 bits (132), Expect = 1e-08, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 17/170 (10%) Query 276 AVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEW-CGTDFKLVDTGGWETD- 333 A+VG N GKSTL N + G V D T D + E G L DT G+ D Sbjct 196 ALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL 254 Query 334 ----VEGIESAIASQAQIAVQLADAVILVVDG----LVGLTDTDERIVKMLRAAGKPVTL 385 VE +S + V+ AD ++ VVD ++ + E ++ + A P+ L Sbjct 255 PHPLVEAFKSTLEE-----VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIIL 309 Query 386 AVNKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKA 435 +NK+D E E + AE + G P ISA G G+ L + ++ L Sbjct 310 VLNKIDLLEDEEILAELER-GSPNPVFISAKTGEGLDLLRERIIELLSGL 358 >CDD:224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]. Length=219 Score = 53.8 bits (129), Expect = 7e-09, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 54/143 (38%), Gaps = 25/143 (17%) Query 445 SHLRRVALVGRPNVGKSSLLNQLAHEE------RTVVNDLAGTTRDPVDEVVTVDGEDWL 498 ++ ++G VGK++LLN+L +E T+ N T +P + + + W Sbjct 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKL--QLW- 59 Query 499 FIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQ----DLKVMSQA 554 DTAG L Y + +V + SD+ L+ + + Sbjct 60 --DTAGQ-EEYRSLRPEYY---RGANGIL------IVYDSTLRESSDELTEEWLEELREL 107 Query 555 VDAGRCIVLVFNKWDLMDEFDRQ 577 I+LV NK DL DE Sbjct 108 APDDVPILLVGNKIDLFDEQSSS 130 >CDD:226124 COG3596, COG3596, Predicted GTPase [General function prediction only]. Length=296 Score = 53.6 bits (129), Expect = 1e-08, Method: Composition-based stats. Identities = 36/153 (24%), Positives = 61/153 (40%), Gaps = 8/153 (5%) Query 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRRL 509 V L+G GKSSL+N L E V+ + T ++ DGE+ + DT G+ Sbjct 42 VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK 101 Query 510 HKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFNKWD 569 K AE+ R + +L L L A D + + G ++F Sbjct 102 DK--DAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLF---- 153 Query 570 LMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKT 602 ++ + DR R W + ++ + A + + K Sbjct 154 VVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 Lambda K H a alpha 0.317 0.134 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 651844770 Query= BifidoAdolescentis.s2#1#35132#ORF14 hypothetical protein Length=137 ***** No hits found ***** Lambda K H a alpha 0.317 0.135 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 70229446 Query= BifidoAdolescentis.s2#1#35132#ORF16 hypothetical protein Length=476 Score E Sequences producing significant alignments: (Bits) Value CDD:226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbo... 187 7e-55 >CDD:226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]. Length=472 Score = 187 bits (477), Expect = 7e-55, Method: Composition-based stats. Identities = 115/373 (31%), Positives = 177/373 (47%), Gaps = 32/373 (9%) Query 74 KTAFLKLNGGLGTSMGLDCAKSLLPVRRHKARQMRFIDIIIGQVLTARTRLGVDLPLTLM 133 K A LKL GG GT +G D K L V+ K D+ Q+ + VD+PL +M Sbjct 105 KLAVLKLAGGQGTRLGCDGPKGLFEVKDGK----SLFDLQAEQIKYLNRQYNVDVPLYIM 160 Query 134 NSFRTSKDTMKVLQTNKKFH--QEDIPMEIIQHQEPKISAETGMPVSFPANPELEWCPPG 191 S +++T ++N F +EDI +Q P++ +++G+P + L W PPG Sbjct 161 TSL-NTEETDSYFKSNDYFGLDKEDIFF-FVQSLFPRLLSDSGLPFLESDDSNLAWYPPG 218 Query 192 HGDLFSTIWESGLLDALEAQGFKYLFISNSDNLGARPSRTLAQHFENTGAPFMIEVAKRT 251 +GDLF + SG+L+ L AQG +YLF+SN DNLGA T +++E +T Sbjct 219 NGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFMAETNYEYLMETTDKT 278 Query 252 PADRKGGHIVRDKATGRLMLREMSQVHPDDKDDAQNIDKHPYFNTNSIWVRIDALKAKLA 311 AD K G +V G+L L E S+V + +++ + K YFNTN+IW + K Sbjct 279 KADEKVGILVTYD--GKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIW--LHLFSVKFL 334 Query 312 SYDGVLPLPVIRNKKTVDPTDPTSEPVIQLETAMGAAVSLFDGATCVCVDRMRFLPVKTT 371 L LP+ + K + D +IQL TA+G +S F+ F+P Sbjct 335 KEAAYLNLPIHKAIKKIPQLD----NIIQLTTAIGKNISKFEN---------EFIPF--- 378 Query 372 DDLFIMRSDRFHLTDQYEMEDGNYIFPDVHLDARYYKNIHDFDARFPYGVPSLAAAKSVD 431 DLF+ +SD P +L+ ++ N+ F P +P + + + Sbjct 379 -DLFLYKSDENGGLLLVPRFGE--FSPLKNLEGSHFDNVETFTCGIPR-IPLILELEGLT 434 Query 432 IDGDWTFGRDVML 444 I G+ FGR+V L Sbjct 435 ISGNVLFGRNVTL 447 Lambda K H a alpha 0.320 0.136 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 414920992 Query= BifidoAdolescentis.s2#1#35132#ORF17 hypothetical protein Length=637 ***** No hits found ***** Lambda K H a alpha 0.315 0.131 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 579621986 Query= BifidoAdolescentis.s2#1#35132#ORF18 hypothetical protein Length=105 ***** No hits found ***** Lambda K H a alpha 0.324 0.136 0.453 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39175650 Query= BifidoAdolescentis.s2#1#35132#ORF19 hypothetical protein Length=867 Score E Sequences producing significant alignments: (Bits) Value CDD:226947 COG4581, COG4581, Superfamily II RNA helicase [DNA rep... 563 0.0 CDD:224125 COG1204, COG1204, Superfamily II helicase [General fun... 215 4e-60 CDD:224123 COG1202, COG1202, Superfamily II helicase, archaea-spe... 153 4e-39 CDD:224122 COG1201, Lhr, Lhr-like helicases [General function pre... 98.5 7e-22 CDD:224126 COG1205, COG1205, Distinct helicase family with a uniq... 77.1 3e-15 CDD:223989 COG1061, SSL2, DNA or RNA helicases of superfamily II ... 73.2 2e-14 CDD:224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, ... 60.4 4e-10 CDD:224121 COG1200, RecG, RecG-like helicase [DNA replication, re... 55.7 1e-08 >CDD:226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]. Length=1041 Score = 563 bits (1452), Expect = 0.0, Method: Composition-based stats. Identities = 303/969 (31%), Positives = 440/969 (45%), Gaps = 193/969 (20%) Query 44 SRFARSMPFELDDFQVKANDALEAGDNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTT 103 + AR PFELD FQ +A LE G++VLV APT +GKTVVA++AI LA + YT+ Sbjct 110 APPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTS 169 Query 104 PIKALSNQKYHDLVETYG--PDRVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSMTLDA 161 PIKALSNQKY DL+ +G D VGL+TGD SIN +A +VMTTE+LRNMLY S +L Sbjct 170 PIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRD 229 Query 162 LRYVILDEVHYLADRFRGPVWEEVIIHLPQSVRIIGLSATVSNVEDFSKWIESVRG-DTT 220 + +V+ DEVHY+ DR RG VWEEVII LP VR + LSATV N E+F++WI+ V Sbjct 230 IEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIH 289 Query 221 LVVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLDQLDRKAAK 280 +V +E RPVPLE V V L DL K N + +A S ++ Sbjct 290 VVSTEHRPVPLEHFVYVGK------GLFDLVDEKKKFNAENFPSA-NRSLSCFSEKVRET 342 Query 281 RRGEQ-RPDRRKGGKGGKWNDHSRRPERHTPRRWAVIDELNFLGILPGIYFIFSRNGCDQ 339 G+ R RR G + RPE ++++L+ +LP I F FSR GC++ Sbjct 343 DDGDVGRYARRTKALRGSAKGPAGRPE--------IVNKLDKDNLLPAIVFSFSRRGCEE 394 Query 340 AVEQCINAGLELTTDDEVRRIRRIVDEMVEGQLSQEDLKALH--FSQFRFALEEGFAPHH 397 A + L LT + E R IR I+D + G L++ED L + L G A HH Sbjct 395 AAQILSTLDLVLTEEKE-RAIREIIDHAI-GDLAEEDR-ELPLQILEISALLLRGIAVHH 451 Query 398 AGMVALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKFDGTGHVGLTPGE 457 AG++ +++VE LF+EGLVKVVFATET A+GINMPAR VV L KFDG GH L+PGE Sbjct 452 AGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGE 511 Query 458 FTQLTGRAGRRGIDTIGHAVVVDH-HGFIPATAAALSSKRVYPLHSSFKPTFNMAVNLLN 516 +TQ++GRAGRRG+D +G +V++ P+ AA L+S ++ PL S F+ ++NM +NLL Sbjct 512 YTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLR 571 Query 517 SSDYETARITLDHSFAQWEANESAWQLEAQMDTLRKALDGYERAFDCEFGDFKE------ 570 +TA L+ SFAQ++ + S ++ +++ L K L+ E E Sbjct 572 VEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELN----DIATELFGTDENDAPKL 627 Query 571 ---FMRLRMRLSDLEK-------------------------------------------- 583 + +LR +L++ + Sbjct 628 SLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLLKLTKRYTTKLTDHE 687 Query 584 ---------------------------NERRKLKHEVFR--------------------- 595 E R L +FR Sbjct 688 LYLAVLVEPNADFSFPRPLVKAMPHMNRESRWLVKILFRISFVYLLNATEILELILTMPR 747 Query 596 -----TQK--------ARSEAFKDLDRSIAE--------------LREKDRDHPCRKCPD 628 K A D + I E K R Sbjct 748 RLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKIQVPELTVSLLKLRFGR----YH 803 Query 629 IQKHLKWGHRWAREMRELERVQHRY-----DSRTGSVARQFDRICN----VLNELGYLDR 679 + ++ A + E E + D + A F VL +LG+++ Sbjct 804 LSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSIEALSFLDDYKTLQEVLKKLGFIED 863 Query 680 LDEGAKEHIDYRLTERGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMSLIYEPR 739 + +G++ + SE +L+L + I G F+ L+ ELA+ + + ++E + Sbjct 864 NAV---------VLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEK 914 Query 740 RGSGGEPRHYPGGMQGNVAVCAAQLKGVHASIAMLCED---YALDEPRQLD---FGITDV 793 G L + L +D ++ +L+ G+ +V Sbjct 915 TDDGTAEAPEITPA------LRDALLRLLELARKLNKDQNSSQIEIYPELNDFSVGLMEV 968 Query 794 VYEWAQGESLSRVLYGTDLTGGDFVRGCKRLADVLQQIAVAGPYLGKRAETLAPIAKQAY 853 VYEWA+G S + + T L G FVR +RL ++L+Q+ A +G L A +A Sbjct 969 VYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIG--NPELEEKAYRAI 1026 Query 854 ENVNRGIVA 862 + + R IV Sbjct 1027 QEIRRDIVF 1035 >CDD:224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]. Length=766 Score = 215 bits (550), Expect = 4e-60, Method: Composition-based stats. Identities = 120/440 (27%), Positives = 199/440 (45%), Gaps = 77/440 (18%) Query 53 ELDDFQVKANDA-LEAGDNVLVAAPTGAGKTVVADFAIY-LAQERNVKAFYTTPIKALSN 110 EL + Q +A + L + +NVL++APTG+GKT++A AI E K Y P+KAL+ Sbjct 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAE 90 Query 111 QKYHDL--VETYGPDRVGLLTGDTSINSE----ADIVVMTTEVLRNMLYEHSMTLDALRY 164 +KY + +E G RVG+ TGD ++ E D++V T E L ++ + ++ + Sbjct 91 EKYEEFSRLEELG-IRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDL 149 Query 165 VILDEVHYLADRFRGPVWEEVIIHLP---QSVRIIGLSATVSNVEDFSKWIESVRGDTTL 221 V++DE+H L DR RGPV E ++ + + +RI+GLSAT+ N E+ + W+ + L Sbjct 150 VVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWL-----NAKL 204 Query 222 VVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLDQLDRKAAKR 281 V S+ RPVPL P + D Sbjct 205 VESDWRPVPLR---------RGVPYVGAFLGADGKKKT---------------------- 233 Query 282 RGEQRPDRRKGGKGGKWNDHSRRPERHTPRRWAVIDELNFLGILPGIYFIFSRNGCDQAV 341 + V++ L G + + F+ SR ++ Sbjct 234 --------WPLLIDNLALEL-------------VLESLAEGGQV--LVFVHSRKEAEKTA 270 Query 342 EQCINAGLELTTDDEVRRIRRIVDEMVEGQLSQEDLKALHFSQFRFALEEGFAPHHAGMV 401 ++ +DDE + ++ + + + L + G A HHAG+ Sbjct 271 KKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEEL-----AELVLRGVAFHHAGLP 325 Query 402 ALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKFDGT-GHVGLTPGEFTQ 460 RQ+VE F +G +KV+ +T TLA G+N+PAR V+++ ++D G V + + Q Sbjct 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQ 385 Query 461 LTGRAGRRGIDTIGHAVVVD 480 + GRAGR G D G A+++ Sbjct 386 MAGRAGRPGYDDYGEAIILA 405 >CDD:224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]. Length=830 Score = 153 bits (388), Expect = 4e-39, Method: Composition-based stats. Identities = 171/723 (24%), Positives = 270/723 (37%), Gaps = 198/723 (27%) Query 53 ELDDFQVKANDA-LEAGDNVLVAAPTGAGKTVVADFA-IYLAQERNVKAFYTTPIKALSN 110 EL QV A +A L G+N+LV + T +GKT++ + A I K + P+ AL+N Sbjct 216 ELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALAN 275 Query 111 QKYHDLVETYGP---------------DRVGLLTGDTSINSEADIVVMTTEVLRNMLYEH 155 QKY D E Y R + DTS + ADI+V T E + +L Sbjct 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPD--ADIIVGTYEGIDYLL-RT 332 Query 156 SMTLDALRYVILDEVHYLADRFRGPVWEEVIIHLP---QSVRIIGLSATVSNVEDFSKWI 212 L + V++DE+H L D RGP + +I L + I LSATV N E+ +K + Sbjct 333 GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKL 392 Query 213 ESVRGDTTLVVSEKRPVPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLD 272 LV+ ++RPVPLE+H++ ++ + ++I A+LV R Sbjct 393 -----GAKLVLYDERPVPLERHLVFARNESEKWDII----------------ARLVKR-- 429 Query 273 QLDRKAAKR-RGEQRPDRRKGGKGGKWNDHSRRPERHTPRRWAVIDELNFLGILPGIYFI 331 + +++K RG+ I F Sbjct 430 EFSTESSKGYRGQT------------------------------------------IVFT 447 Query 332 FSRNGCDQAVEQCINAGLELTTDDEVRRIRRIVDEMVEGQLSQEDLKALHFSQFRFALEE 391 +SR RR + D L+ + LKA Sbjct 448 YSR-----------------------RRCHELAD-----ALTGKGLKA------------ 467 Query 392 GFAPHHAGMVALFRQIVERLFEEGLVKVVFATETLALGINMPARCVVVEKLEKFDGTGHV 451 AP+HAG+ R+ VER F + V T LA G++ PA V+ E L G Sbjct 468 --APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL----AMGIE 521 Query 452 GLTPGEFTQLTGRAGRRGIDTIGHAVVVDHHGFIPATAAALSSKRVYPLHSSFKPTFN-M 510 L+ EF Q+ GRAGR G ++ G + Y H+S + T + + Sbjct 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG------------KKY--HASMEETEDEV 567 Query 511 AVNLLNSSDYETARITLDHSFAQWEANESAWQLEAQMDTLRKALDGYERAFDCEFGDFKE 570 A LL S+ E + +++ + + A + +L ER G + Sbjct 568 AFKLLE-SEPEPVIV-------EYDEEDEEENVLASA-GVTNSLSVIERVNSLMLGAAFD 618 Query 571 FMRLRMRLSDLEKNERRKLKHEVFRTQKARSEAFKDLDRSIAELREKDRDHPCRKCPDIQ 630 + +L + +++ +A + +F L S AE I+ Sbjct 619 PKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSF--LGPSEAEF--------------IR 662 Query 631 KHLKWGHRWAREMRELERVQHRYDSRTGSVARQFDRICNV-----LNELGYLDRLDEGAK 685 + + R ELE ++ Y S G + R + L + LD L+EG K Sbjct 663 EGVLASMDPLRIAAELEPFENAYLS--GFLKRAIESALRGRVPSRLFDSALLDILEEGDK 720 Query 686 -EHIDYRLTERGQLLRHLYSELDLVLAQAIDDGAFDGLDATELASAVMS-LIYEPRRGSG 743 +D +L E+ L +Y + + D E A +S I E R G Sbjct 721 IIELDPKLKEK---LLLIYMDFLNCTCR----------DCCECAEQRLSEKIIELRI-EG 766 Query 744 GEP 746 +P Sbjct 767 KDP 769 >CDD:224122 COG1201, Lhr, Lhr-like helicases [General function prediction only]. Length=814 Score = 98.5 bits (246), Expect = 7e-22, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 100/237 (42%), Gaps = 49/237 (21%) Query 53 ELDDFQVKANDALEAGDNVLVAAPTGAGKTVVADFAIY--------LAQERNVKAFYTTP 104 L Q A + +G+NVL+ APTG+GKT A + E + A Y +P Sbjct 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 Query 105 IKALSNQKYHDL---VETYGPDRVGLL----TGDTSINSEA-------DIVVMTTEVLRN 150 +KAL+N D+ +E +G+ GDT + + I++ T E L Sbjct 82 LKALNN----DIRRRLEEPL-RELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAI 136 Query 151 MLYEHSM--TLDALRYVILDEVHYLADRFRGPVWEEVIIHL-----------PQSVRIIG 197 +L L +RYVI+DE+H LA+ RG + L R IG Sbjct 137 LLNSPKFRELLRDVRYVIVDEIHALAESKRG-------VQLALSLERLRELAGDFQR-IG 188 Query 198 LSATVSNVEDFSKWIESVRGDTTLV-VSEKRPVPLEQHVLVQADDHTEPELIDLYRR 253 LSATV E+ +K++ +V VS + + ++ V+ + E LY R Sbjct 189 LSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYER 245 >CDD:224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]. Length=851 Score = 77.1 bits (190), Expect = 3e-15, Method: Composition-based stats. Identities = 93/469 (20%), Positives = 148/469 (32%), Gaps = 156/469 (33%) Query 41 SVSSRFARSMPFELDDFQVKANDALEAGDNVLVAAPTGAGKTVVADFAIY--LAQERNVK 98 S+ S ++ L QV A + G NV+V TG+GKT I L ++ + + Sbjct 58 SLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSAR 117 Query 99 AFYTTPIKALSNQKYHDLVE----TYGPDRVGLLTGDTS-------INSEADIVVMTTEV 147 A P AL+N + L E G G TGDT I + DI++ ++ Sbjct 118 ALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDM 177 Query 148 LRNMLYEHS----MTLDALRYVILDEVH-----------YLADRFRGPVWEEVIIHLPQS 192 L +L + L L+Y+++DE+H L R + Sbjct 178 LHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLL-----RRLRRYGSP 232 Query 193 VRIIGLSATVSNVEDFSKWIESVRGDTTLVVSEKRPVPLEQHVLVQADDHTEPELIDLYR 252 ++II SAT++N +F++ Sbjct 233 LQIICTSATLANPGEFAE------------------------------------------ 250 Query 253 RDKDGNQTDKLNAQLVSRLDQLDRKAAKRRGEQRPDRRKGGKGGKWNDHSRRPERHTPRR 312 +L R ++ D S R R+ RR Sbjct 251 -------------ELFGRDFEVPV---------------------DEDGSPRGLRYFVRR 276 Query 313 WAVIDELNFLGILPGIYFIFSRNGCDQAVEQCINAGLELTTDDEVRRIRRIV----DEMV 368 P I + + + A+ + L I+ +V + V Sbjct 277 ------------EPPIREL-AESIRRSALAE----LATLAALLVRNGIQTLVFFRSRKQV 319 Query 369 E----GQLSQEDLKALHFSQFRFALEEGFAPHHAGMVALFRQIVERLFEEGLVKVVFATE 424 E + + + + AG+ R+ +E F+EG + V AT Sbjct 320 ELLYLSPRRRLVREGGKLLDAV-------STYRAGLHREERRRIEAEFKEGELLGVIATN 372 Query 425 TLALGINMPARCVVVEKLEKFDGTGHVGLTPG----EFTQLTGRAGRRG 469 L LGI+ + D G PG F Q GRAGRRG Sbjct 373 ALELGID----------IGSLDAVIAYGY-PGVSVLSFRQRAGRAGRRG 410 >CDD:223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]. Length=442 Score = 73.2 bits (180), Expect = 2e-14, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 14/170 (8%) Query 38 KRQSVSSRFARSMPFELDDFQVKANDAL----EAGDNVLVAAPTGAGKTVVADFAIYLAQ 93 + + + + FEL +Q +A DAL ++ PTGAGKTVVA AI Sbjct 21 LDEGLPLKLIVAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA--- 77 Query 94 ERNVKAFYTTPIKALSNQKYHDLVETYG-PDRVGLLTGDTSINSEADIVVMTTEVLRNML 152 E P K L +Q L + D +G+ G A + V T + L Sbjct 78 ELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQ 137 Query 153 YEHSMTLDALRYVILDEVHYL-ADRFRGPVWEEVIIHLPQSVRIIGLSAT 201 + +I DEVH+L A +R E++ +GL+AT Sbjct 138 LLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAA---YPRLGLTAT 182 >CDD:224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair]. Length=542 Score = 60.4 bits (147), Expect = 4e-10, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 40/227 (18%) Query 70 NVLVAAPTGAGKTVVADFAI--YLAQERNVKAFYTTPIKALSNQKYHDLVETYG--PDRV 125 N LV PTG GKT +A I L K + P K L Q + G D + Sbjct 31 NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 Query 126 GLLTGDTSIN------SEADIVVMTTEVLRNMLYEHSMTLDALRYVILDEVH-------- 171 LTG+ ++ + V T +V+ N L + LD + +I DE H Sbjct 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY 149 Query 172 -YLADRFRGPVWEEVIIHLPQSVRIIGLSATV-SNVEDFSKWIESVRGDTTLVVSEKRP- 228 ++A + + ++ I+GL+A+ S++E + +E++ + V +E+ P Sbjct 150 VFVAKEY---------LRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPD 200 Query 229 -VPLEQHVLVQADDHTEPELIDLYRRDKDGNQTDKLNAQLVSRLDQL 274 P + + V+ PE I R L L RL L Sbjct 201 VRPYVKKIKVEWIKVDLPEEIKEIRDL--------LRDALKPRLKPL 239 >CDD:224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription]. Length=677 Score = 55.7 bits (135), Expect = 1e-08, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 73/179 (41%), Gaps = 34/179 (19%) Query 23 LSPAQRYAAFKQTQAKRQSVSS----RFARSMPFELDDFQVKANDALEAGD-------NV 71 LS R A ++ + +F ++PF+L + Q + + A D N Sbjct 228 LSLLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEILA-DLASPVPMNR 286 Query 72 LVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQKYHDLVETYGPD--RVGLLT 129 L+ G+GKTVVA A+ A E +A P + L+ Q Y L + P RV LLT Sbjct 287 LLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLT 346 Query 130 GDTS-----------INSEADIVVMTTEVLRNMLYEHSMTLDALRYVILDEVHYLADRF 177 G + E DIVV T + L + + L VI+DE H RF Sbjct 347 GSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQH----RF 396 Lambda K H a alpha 0.320 0.136 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 808844706 Query= BifidoAdolescentis.s2#1#35132#ORF20 RNA polymerase-binding protein RbpA Length=115 ***** No hits found ***** Lambda K H a alpha 0.318 0.134 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47984118 Query= BifidoAdolescentis.s2#1#35132#ORF21 5'-nucleotidase Length=237 Score E Sequences producing significant alignments: (Bits) Value CDD:223620 COG0546, Gph, Predicted phosphatases [General function... 122 2e-35 CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomut... 59.4 1e-11 CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily... 56.4 1e-10 >CDD:223620 COG0546, Gph, Predicted phosphatases [General function prediction only]. Length=220 Score = 122 bits (308), Expect = 2e-35, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 102/232 (44%), Gaps = 17/232 (7%) Query 5 PKKVVLLDLDGTLTKSDPGIIGCVVKAFEEMGYPVPDDAELHRFIGPAISESMQR--NGI 62 K +L DLDGTL S I+ A E+G P D+ E+ + IG + E ++R Sbjct 3 MIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEA 62 Query 63 PDDKLDEGVRIYRKYYADEAVFDDPNNPGQKVPGRLNNTIYQGIPEQLAKLRADGYYLAI 122 ++ E V R+ + + + RL + G+ E LA L++ GY L I Sbjct 63 DEEAAAELVERLREEFLTAY--------AELLESRL----FPGVKELLAALKSAGYKLGI 110 Query 123 ASCKPQYQCIPICEHFHLDTMVDGIYGASEDNSRLDKDQVIRWAFQHIDFDENAGDKALM 182 + KP+ + + + L D I G + + + + + D ++ALM Sbjct 111 VTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDP---EEALM 167 Query 183 VGDRWTDADGAKACGLDCLGCGWGYAEPGELKAHGAYRILDSVDELAQAVEE 234 VGD D AKA G+ +G WGY EL GA ++DS+ EL + E Sbjct 168 VGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLAE 219 >CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]. Length=221 Score = 59.4 bits (144), Expect = 1e-11, Method: Composition-based stats. Identities = 54/235 (23%), Positives = 86/235 (37%), Gaps = 24/235 (10%) Query 7 KVVLLDLDGTLTKSDPGIIGCVVKAFEEMGYPVPDDAELHRF---IGPAISESMQRNGIP 63 K V+ D+DGTL S+P ++A +E G + D+ I I + Sbjct 3 KAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAG- 61 Query 64 DDKLDEGVRIYRKYYADEAVFDDPNNPGQKVPGRLNNTIYQGIPEQLAKLRADGYYLAIA 123 +D D Y A+ + G+ E L +L+A G LA+A Sbjct 62 EDPADLAELERLLYEAEALELEG-------------LKPIPGVVELLEQLKARGIPLAVA 108 Query 124 SCKPQYQCIPICEHFHLDTMVDGIYGASED-NSRLDKDQVIRWAFQHIDFDENAGDKALM 182 S P+ + L D I A + + D + A + + D ++ ++ Sbjct 109 SSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLL-AAERLGVD---PEECVV 164 Query 183 VGDRWTDADGAKACGLDCLG--CGWGYAEPGELKAHGAYRILDSVDELAQAVEEY 235 V D AKA G+ +G G L AHGA +L + EL +E Sbjct 165 VEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPALLEAR 219 >CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]. Length=229 Score = 56.4 bits (136), Expect = 1e-10, Method: Composition-based stats. Identities = 49/234 (21%), Positives = 81/234 (35%), Gaps = 16/234 (7%) Query 7 KVVLLDLDGTLTKSDPGIIGCVVKAFEEMGYPVPDDAELHRFIGPAISESMQRNGIPDDK 66 K +L DLDGTL D V+ F E+G P + + I + R + Sbjct 5 KAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKL---IEKLEARFLRGEYT 61 Query 67 LDEGVRIYRKYYADEAVFDDPNNPGQKVPGRLNNTIYQGIPEQLAKLRADG--YYLAIAS 124 + G+ + R E + D + + + PE L L+ G Y L I + Sbjct 62 GEYGLTLERLLELLERLLGDEDAELVEELLAALAKLLPDYPEALEALKELGKKYKLGILT 121 Query 125 CKPQYQCIPICEHFHLDTMVDGIYGASEDNSRLDK-DQVI-RWAFQHIDFDENAGDKALM 182 + L D ++ + + K D I +A + + ++AL Sbjct 122 NGARPHQERKLRQLGLLDYFDAVFISEDVGVA--KPDPEIFEYALEKLGVP---PEEALF 176 Query 183 VGDR-WTDADGAKACGLDCLGCGWGY-AEPGELKAHGAYRILDSVDELAQAVEE 234 VGD D GA+A G+ +P + S+ EL +E Sbjct 177 VGDSLENDILGARALGMK--TVWINRGGKPLPDALEAPDYEISSLAELLDLLER 228 Lambda K H a alpha 0.319 0.140 0.438 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 170286410 Query= BifidoAdolescentis.s2#1#35132#ORF22 hypothetical protein Length=121 ***** No hits found ***** Lambda K H a alpha 0.331 0.138 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 54838992 Query= BifidoAdolescentis.s2#1#35132#ORF23 hypothetical protein Length=222 Score E Sequences producing significant alignments: (Bits) Value CDD:223860 COG0789, SoxR, Predicted transcriptional regulators [T... 47.0 5e-08 >CDD:223860 COG0789, SoxR, Predicted transcriptional regulators [Transcription]. Length=124 Score = 47.0 bits (112), Expect = 5e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (5%) Query 41 ASKVAGITYRQLDYWARKQIVEPSITPSHGSGSRRLYSFKDVVILAVSKRLLDAGINLQN 100 +K+ G++ R L ++ RK ++ P G R Y+ +D+ +L + K L + G +L Sbjct 6 VAKLTGVSVRTLRFYERKGLLSPERR---DEGGYRYYTPEDLELLQIIKTLRELGFSLAE 62 Query 101 V 101 + Sbjct 63 I 63 Lambda K H a alpha 0.317 0.130 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 155592795 Query= BifidoAdolescentis.s2#1#35132#ORF24 hypothetical protein Length=148 Score E Sequences producing significant alignments: (Bits) Value CDD:224630 COG1716, COG1716, FOG: FHA domain [Signal transduction... 81.5 6e-21 CDD:225987 COG3456, COG3456, Predicted component of the type VI p... 55.6 1e-10 >CDD:224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]. Length=191 Score = 81.5 bits (201), Expect = 6e-21, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 58/135 (43%), Gaps = 1/135 (1%) Query 8 IPSAGETTIIGLPAITVPVTSTGDRPLTKEDLNTIMRLADGTALLISTRGAVSGSRYLLD 67 + T L A T + L + L L T G GS +L Sbjct 28 LKELKYETAAALRADTRNELTAPLSLLDNGKILEPGVLTALDGPLAVTIGLDEGSVIVLG 87 Query 68 EDEITVGRDPSSDILLDDSTVSRTHAVFRRINGNYSVIDAGSLNGTYVNRQRVDS-QELK 126 E T+GRDP +DI+LDD VSR HA RR + D GS NGTYVN ++V L+ Sbjct 88 EPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQRVLLQ 147 Query 127 NGDEIILGKFRLVYF 141 +GD I LG Sbjct 148 DGDVIRLGGTLAERL 162 >CDD:225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]. Length=430 Score = 55.6 bits (134), Expect = 1e-10, Method: Composition-based stats. Identities = 26/98 (27%), Positives = 44/98 (45%), Gaps = 9/98 (9%) Query 49 TALLISTRGAVSG--SRYLLDEDEITVGRDPSSDILLDDS--TVSRTHAVFRRINGNYSV 104 + + + + SG ++ L D +GR P D +DD VS+ H +G + + Sbjct 4 SLQVTNAQKLESGKAAQKLFDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYRDGGFCL 63 Query 105 IDAGSLNGTYVN----RQRVDSQELKNGDEIILGKFRL 138 D S G VN S L+ GDEI++G++ + Sbjct 64 TDT-SNGGLLVNGSDLPLGEGSARLQQGDEILIGRYII 100 Lambda K H a alpha 0.316 0.134 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 81205920 Query= BifidoAdolescentis.s2#1#35132#ORF25 hypothetical protein Length=74 ***** No hits found ***** Lambda K H a alpha 0.315 0.135 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37088767 Query= BifidoAdolescentis.s2#1#35132#ORF26 hypothetical protein Length=43 ***** No hits found ***** Lambda K H a alpha 0.314 0.127 0.322 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36799542 Query= BifidoAdolescentis.s2#1#35132#ORF31 hypothetical protein Length=269 ***** No hits found ***** Lambda K H a alpha 0.320 0.136 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 203437314 Query= BifidoAdolescentis.s2#1#35132#ORF32 Undecaprenyl-diphosphatase Length=294 Score E Sequences producing significant alignments: (Bits) Value CDD:224879 COG1968, BacA, Undecaprenyl pyrophosphate phosphatase ... 244 3e-81 >CDD:224879 COG1968, BacA, Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]. Length=270 Score = 244 bits (624), Expect = 3e-81, Method: Composition-based stats. Identities = 108/272 (40%), Positives = 164/272 (60%), Gaps = 20/272 (7%) Query 1 MNFFQAIFLGLVQALTEYLPVSSSAHIRIIGDLMLGSDPGAAFTAIIQIGTELAVILYFR 60 M QAI LG+V+ +TE+LP+SS+ H+ ++G L+ SD G +F +IQ+G LAV++YF Sbjct 4 MELLQAIILGIVEGITEFLPISSTGHLILVGHLLGFSDAGKSFEIVIQLGAILAVVVYFW 63 Query 61 HDIIRILGAWFGSLFGKEGKDFKSRMGAHNRDTQMGWFIIIGTLPILIAGLLFKDAIEST 120 +D++R+L K F+ + +R ++ I++ T+P ++ GLLFKD I+S Sbjct 64 NDLLRLL------------KGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSH 111 Query 121 LRNLWITVTVLIIFGILLWVVD--ARAKQVKTMDEMTWKDALIFGIGQMLALIPGVSRSG 178 L N + LI+ GILL + + + +++ +D++T +DALI G+ Q LALIPG SRSG Sbjct 112 LFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSG 171 Query 179 GTITFGRAMGYTREAAVRVSFLMAIPAVFGAGILEAVSAVKDVAAGNAGMFPGWGATIAA 238 TI+ G +G +REAA SFL+AIPA+FGA L+ +G+A + Sbjct 172 ATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFK------SGDALSAADLPILLVG 225 Query 239 TIVAFVVGYVVIIGFLKFVSTFSYKAFAIYRI 270 IVAFVV + I L+F+ S+ FAIYRI Sbjct 226 FIVAFVVSLIAIKFLLRFIKRHSFIPFAIYRI 257 Lambda K H a alpha 0.330 0.143 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 228663960 Query= BifidoAdolescentis.s2#1#35132#ORF33 putative ketoamine kinase Length=273 Score E Sequences producing significant alignments: (Bits) Value CDD:225547 COG3001, COG3001, Uncharacterized protein conserved in... 156 3e-47 >CDD:225547 COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]. Length=286 Score = 156 bits (396), Expect = 3e-47, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 119/259 (46%), Gaps = 37/259 (14%) Query 25 FFECEGRGLKWLGEAQSQGGPRVVDVYDWGKD---------YLDIERVNACGPTIQAARD 75 F E GL+ L + + P+V G YL ++A +A Sbjct 54 MFTAEADGLELLARSNTITVPKV---IAVGASRDHSYLVLEYLPTGPLDA-----HSAFI 105 Query 76 FGVALAHMHDAGAEHFGSAPTGYDGTCYFGPLQDPVPMNAGAW-DDVATYLADGRLRPMV 134 G LA +H G + A G D Y G P W AT+ A+ R+ + Sbjct 106 LGQQLARLHQWGGQ----AQFGLDFDNYIGTTPQPNT-----WQRRWATFFAEQRIGWQL 156 Query 135 RLGMKRRELTDYDMELTEAVIDALPDILGKAANDKPARVHGDLWSGNVMWTADSGDVEAV 194 +L + R LT D++ A+++ + ++L +P+ +HGDLWSGN + D V Sbjct 157 QL-ARERGLTFGDID---AIVEKIQELLADH-QPQPSLLHGDLWSGNCAFGKD----GPV 207 Query 195 LIDPAAHGGHREEDLAMLDLFGMSYLTDILEGYQSAHPLKAGWQDRITLWQLYPIAGHCV 254 + DPA + G RE DLAML+LFG + + +GYQS PL AG+ +R ++QLY + H Sbjct 208 IFDPACYWGDRECDLAMLELFG-GFPPEFYDGYQSVSPLPAGYLERKPIYQLYHLLNHAN 266 Query 255 FFGGGYVSRYRAMCRSLLK 273 FGG Y+ + +L Sbjct 267 LFGGHYLVEAQKSIDRILS 285 Lambda K H a alpha 0.321 0.140 0.452 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 207812310 Query= BifidoAdolescentis.s2#1#35132#ORF34 Chaperone protein DnaJ 2 Length=383 Score E Sequences producing significant alignments: (Bits) Value CDD:223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-t... 340 2e-116 CDD:225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttra... 84.1 1e-19 CDD:227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [... 78.8 9e-17 CDD:227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [T... 55.4 2e-09 >CDD:223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]. Length=371 Score = 340 bits (875), Expect = 2e-116, Method: Composition-based stats. Identities = 165/382 (43%), Positives = 214/382 (56%), Gaps = 19/382 (5%) Query 2 TDYYEVLGVDRSASDDEIKKAYRKMSRKYHPDIAG--PEFEDKFKEVNNAYDVLSDPKKR 59 DYYE+LGV + AS++EIKKAYRK+++KYHPD E E+KFKE+N AY+VLSDP+KR Sbjct 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63 Query 60 QMYDAGVDPNDPNAGGMHGGGFGGGFGDMGDIFSMFTGGGFGGTGGGPTPRTQPGRDALV 119 YD AGG G GFGG GD GDIF F GGG GG R + G D Sbjct 64 AAYDQF-GHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGGRRRPN--RPRRGADLRY 120 Query 120 SATIDLKTAVFGDTTHVKVNTFGLCQECGGTGCQNGTQPTQCPDCHGQGYAQRVVRTMLG 179 + I L+ AVFG ++V C C G+G + GT P CP C+G G Q G Sbjct 121 NLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG--QVRTVQRTG 178 Query 180 QMMTTAPCERCEGHGTVIEKPCPSCLGHGRVRVTRNVGVAVPAGVANNTRLRLANQGEVG 239 C C G G +I+ PC C G GRV+ +++ V +PAGV + R+RL+ +GE G Sbjct 179 FFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAG 238 Query 240 ENGGVAGDLYVDIRIKPDDMFTRDDDDLHCWIKVPMSWAVLGHEVEIDTFDGRQTLDIPA 299 NGG AGDLYV + +KP +F RD DDL+C + + + A LG E+E+ T DGR L IPA Sbjct 239 PNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPA 298 Query 300 GSQPDDTVTLKNLGVTHLDDKNERGDLVAHVVVEIPKKLSDDERELIERFGEMHDTDAQH 359 G+Q + L+ G+ L RGDL V VE PK LSD+++EL+E F + Sbjct 299 GTQTGEVFRLRGKGMPKL-RSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKS------- 350 Query 360 VAVKSRPSSGAKKGFFSKLKDA 381 GFF KLK+ Sbjct 351 ----LGEGPEQSPGFFDKLKNF 368 >CDD:225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]. Length=237 Score = 84.1 bits (207), Expect = 1e-19, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 3/66 (5%) Query 1 MTDYYEVLGVDRSASDDEIKKAYRKMSRKYHPD---IAGPEFEDKFKEVNNAYDVLSDPK 57 + DYYE+LGV +AS +EIKKAYRK++ KYHPD E+KFKE+N AY++LSDP+ Sbjct 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64 Query 58 KRQMYD 63 +R YD Sbjct 65 RRAEYD 70 >CDD:227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]. Length=610 Score = 78.8 bits (194), Expect = 9e-17, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 7/76 (9%) Query 3 DYYEVLGVDRSASDDEIKKAYRKMSRKYHPDIAGP-------EFEDKFKEVNNAYDVLSD 55 D YE+LG+D+ S+ +IKK YR +S K+HPD A P E+E+K+K + AY +L+D Sbjct 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 Query 56 PKKRQMYDAGVDPNDP 71 K+R+ Y P+ P Sbjct 159 KKRRENYLNYGTPDSP 174 >CDD:227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]. Length=379 Score = 55.4 bits (133), Expect = 2e-09, Method: Composition-based stats. Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 7/69 (10%) Query 3 DYYEVLGVDR---SASDDEIKKAYRKMSRKYHPDI--AGPEFEDK--FKEVNNAYDVLSD 55 D Y +LG+ + A +I KA++K KYHPD AG FK + A +VL D Sbjct 44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103 Query 56 PKKRQMYDA 64 K R YD+ Sbjct 104 RKLRLQYDS 112 Lambda K H a alpha 0.317 0.138 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 320501610 Query= BifidoAdolescentis.s2#1#35132#ORF35 Heat-inducible transcription repressor HrcA Length=375 Score E Sequences producing significant alignments: (Bits) Value CDD:224338 COG1420, HrcA, Transcriptional regulator of heat shock... 260 1e-85 >CDD:224338 COG1420, HrcA, Transcriptional regulator of heat shock gene [Transcription]. Length=346 Score = 260 bits (667), Expect = 1e-85, Method: Composition-based stats. Identities = 137/379 (36%), Positives = 200/379 (53%), Gaps = 54/379 (14%) Query 1 MAQSRRMLVLRAVVEDYIRSQEPVGSTTLTRDHDLGVSSATVRNDMAALEDEGYLIQPHT 60 R+ L+LRA+VEDY+ + EPVGS TL+ ++L +SSAT+RN+MA LE G + +PHT Sbjct 3 KLDERQRLILRAIVEDYLATGEPVGSKTLSEKYNLDLSSATIRNEMADLEKLGLIEKPHT 62 Query 61 SAGRVPTEKGYRYFVDRLATVVPLSEAQRRGINSFL-SGSVNLQDTLQRAARLLAQITGQ 119 S+GRVPT+KGYRY+VD L V LSE +RR I SFL S +L+D LQ+AA+LL+++TG Sbjct 63 SSGRVPTDKGYRYYVDHLLEVEDLSEEERRRIESFLESEGYDLEDLLQKAAQLLSELTGL 122 Query 120 VAVVAAPSLSKSTLRHIEIVPVSINTLLAVVITDTGRVAQHILNVTKLPDVTT---LTHL 176 VV P S +L+HIE+VP+ + LAV++TD+G V I+ +LP+ T L L Sbjct 123 TGVVLTPKFSDESLKHIELVPLDPHRALAVLVTDSGEVENRII---ELPEGITLSDLEEL 179 Query 177 TNEINTQCSGVSLTRTADCVRQMGARKEYH---AISTLAETLA---QAFDGMADDERASE 230 +N +N + G +L ++ + E L E + + + S Sbjct 180 SNILNARLRGTTLN-------EIRTKLEKELPEFRRILGELVDNLLELGLHFFSLDGDSR 232 Query 231 LYMAGTSRLAHQ---RTVADLAPLFDALEEQVVLMKLMSSLSETTQSDGVGVAIGSETHT 287 L + G + L +Q + L L + LE+Q VL++L L +++GV V IG E Sbjct 233 LLVGGKANLLNQPEFSDIERLRQLLELLEDQKVLLQL---LDNEEEAEGVTVFIGRENGL 289 Query 288 PGLLHASVVTSGYGRTSAAATDGATHAAASSQTENQSGDDTRQAGEPVAFVGSIGPTHMD 347 L SV+T+ Y R G P+ +G IGPT MD Sbjct 290 ESLEGCSVITAPY----------------------------RIGGSPLGALGVIGPTRMD 321 Query 348 YAATMAAVRAVARYLTAFL 366 Y + V VA+ L+ L Sbjct 322 YQRVIPLVDYVAKVLSELL 340 Lambda K H a alpha 0.315 0.127 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 311868570 Query= BifidoAdolescentis.s2#1#35132#ORF36 Transketolase Length=702 Score E Sequences producing significant alignments: (Bits) Value CDD:223100 COG0021, TktA, Transketolase [Carbohydrate transport a... 859 0.0 CDD:226468 COG3959, COG3959, Transketolase, N-terminal subunit [C... 185 5e-55 CDD:226467 COG3958, COG3958, Transketolase, C-terminal subunit [C... 109 4e-27 CDD:225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydro... 71.6 1e-13 CDD:224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coen... 61.4 1e-10 >CDD:223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]. Length=663 Score = 859 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 341/692 (49%), Positives = 445/692 (64%), Gaps = 31/692 (4%) Query 6 ETELDERAIKMAKVLSADAVERAGHGHPGSPVSLAPIAYTLYQHFIKHDPNDPNWEGRDR 65 ++D+ + LS DAV++A GHPG+P+ A IAY L+ F+KH+P++P W RDR Sbjct 2 MMKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDR 61 Query 66 FILSGGHASLTQYVQLYFSGYGLTLDDLKNFRGGADTRTPGHPEYGLTPGIEMTTGPLGQ 125 F+LS GH S+ Y L+ +GY L+L+DLKNFR ++TPGHPEYG TPG+E TTGPLGQ Sbjct 62 FVLSAGHGSMLLYSLLHLTGYDLSLEDLKNFRQLG-SKTPGHPEYGHTPGVEATTGPLGQ 120 Query 126 GFASAIGFAYGQRFQRGLLDPEAPEGESPFDHNIWVICGEGDIEEGISGEAASLAANQQL 185 G A+A+G A ++ L + G DH +V+ G+G + EG+S EAASLA + +L Sbjct 121 GLANAVGMALAEKHLAALFNRP---GFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKL 177 Query 186 GNLTVIFDANRIQIEGDTNLVLAEDVLKRFQAYGWYTDEFSFIQPDGSYKEDVEGLADTI 245 G L V++D+N I I+GDT+L EDV KRF+AYGW DG D+E + I Sbjct 178 GKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVI----DG---HDLEAIDKAI 230 Query 246 AKARAAAPNQPKLIKVDTLIAWPTPGKTNDPSSHGSKLGAEAVAGLKKLLGYDPEESFHV 305 +A+A+ ++P LI V T+I +P K HG+ LG E VA KK LG++PE F V Sbjct 231 EEAKAST-DKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEP-FEV 288 Query 306 DEEALAHARKVAERGLEAHKEWDEKYNAWRKANPDKAALYDRIKAGELPEGFDKAIDDLE 365 EE A R V ERG +A W+E + A++K P+ AA ++R GELP + + E Sbjct 289 PEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFE 348 Query 366 ATFEVGKNVATRGASGSTLNAIAAVMPELWGGSADLGGSNKTDLKGAETFAPAECATKQW 425 A GK++ATR ASG LNA+A +PEL GGSADL SN T + G+ F+P Sbjct 349 AN---GKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPEN------ 399 Query 426 PNCSKYGRQLHFGVREFTMGTITNGILLGSHTRPYGGTFFMFSDYERSAVRLAALMQIPN 485 GR +HFGVREF M I NGI L PYGGTF +FSDY R AVRLAALM +P Sbjct 400 ----YAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAVRLAALMGLPV 455 Query 486 LYVWSHDSVAVGEDGPTHQPVEHLASFRAIPQLEVARPADAYETAEAYRYFFEKKNTLPT 545 +YV++HDS+ VGEDGPTHQPVE LAS RAIP L V RPADA ETA A++Y E+K+ PT Sbjct 456 IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKDG-PT 514 Query 546 AMVLTRQGVPVLAETAEKAKDGVKKGAYVLVDTEG-TPDVIIMATGSEVQWAVSAAKTLA 604 A++LTRQ +PVL T +GV KGAYVL D+ G PDVI++ATGSEV+ AV AAK L Sbjct 515 ALILTRQNLPVLERTDL---EGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELE 571 Query 605 GEGIKARVVSVPCVEWFEEQDAEYKEAVLPAAVKARVSVEAGVAMPWYKYLGSYGKPVSI 664 EGIK RVVS+P E FE+QD EY+E+VLP AV ARV++EAG A+ WYKY+G G + + Sbjct 572 AEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGM 631 Query 665 EQFGLQGDGAQNMIDLGITAEHVVEAAKASIA 696 + FG G + + G T E+VV AK+ + Sbjct 632 DSFGASAPGDELFKEFGFTVENVVAKAKSLLN 663 >CDD:226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]. Length=243 Score = 185 bits (473), Expect = 5e-55, Method: Composition-based stats. Identities = 89/264 (34%), Positives = 140/264 (53%), Gaps = 26/264 (10%) Query 2 TEFKETELDERAIKMAKVLSADAVERAGHGHPGSPVSLAPIAYTLYQHFIKHDPNDPNWE 61 EL+ A + + + AG GH G +S+ I LY + DP+DP W Sbjct 3 MPLSVDELERIARE-IRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWP 61 Query 62 GRDRFILSGGHASLTQYVQLYFSGYGLTLDDLKNFRGGADTRTPGHPEYGLTPGIEMTTG 121 GRDRFILS GHA+ Y L GY ++L+ FR +R PGHPE TPG+E++TG Sbjct 62 GRDRFILSKGHAAPALYATLAEKGY-FPEEELETFR-RIGSRLPGHPERNKTPGVEVSTG 119 Query 122 PLGQGFASAIGFAYGQRFQRGLLDPEAPEGESPFDHNIWVICGEGDIEEGISGEAASLAA 181 LGQG + A+G A G + + + ++VI G+G+++EG EAA AA Sbjct 120 SLGQGLSVAVGMALGAKLKGS-------------PYRVYVILGDGELDEGQVWEAAMTAA 166 Query 182 NQQLGNLTVIFDANRIQIEGDTNLVL-AEDVLKRFQAYGWYTDEFSFIQPDGSYKEDVEG 240 + +L NL I D N++Q++G+T ++ E + +++A+GW I+ DG D+E Sbjct 167 HYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEV-----IEVDGH---DIEE 218 Query 241 LADTIAKARAAAPNQPKLIKVDTL 264 + + + KA+ + +P +I T+ Sbjct 219 IVEALEKAKGSK-GRPTVIIAKTV 241 >CDD:226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]. Length=312 Score = 109 bits (275), Expect = 4e-27, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 119/285 (42%), Gaps = 56/285 (20%) Query 375 ATRGASGSTLNAIAAVMPELWGGSADLGGSNKTDLKGAETFAPAECATKQWPNCSKYGRQ 434 + R G TL + ++ ADL S KT FA K++P+ R Sbjct 8 SLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGY-----FA------KEFPD-----RF 51 Query 435 LHFGVREFTMGTITNGILLGSHTRPYGGTFFMFS------------DYERSAVRLAALMQ 482 + G+ E M G+ L +P+ TF F Y V++ A Sbjct 52 FNVGIAEQDMVGTAAGLALAGK-KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVA--- 107 Query 483 IPNLYVWSHDSVAVGEDGPTHQPVEHLASFRAIPQLEVARPADAYETAEAYRYFFEKKNT 542 +H V GEDG +HQ +E +A R +P + V PADA ET + K Sbjct 108 -------THAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIADYKG- 159 Query 543 LPTAMVLTRQGVPV-LAETAEKAKDGVKKGAYVLVDTEGTPDVIIMATGSEVQWAVSAAK 601 P M L R VPV + E + G A VL D D+ I+ATG V A+ AA+ Sbjct 160 -PVYMRLGRGKVPVVVDEGGYTFEIG---KANVLRDGS---DLTIIATGVMVAEALEAAE 212 Query 602 TLAGEGIKARVVSVPCVEWFEEQDAEYKEAVLPAAVKAR--VSVE 644 L EGI A V+++ ++ +EQ A+L AA + V+ E Sbjct 213 ILKKEGISAAVINMFTIKPIDEQ------AILKAARETGRIVTAE 251 >CDD:225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]. Length=887 Score = 71.6 bits (176), Expect = 1e-13, Method: Composition-based stats. Identities = 55/199 (28%), Positives = 87/199 (44%), Gaps = 25/199 (13%) Query 31 GHPGSPVSLAPIAYTLYQHFIKHDPNDPNWEGRDRFILSGGHASLTQYVQLYFSGYGLTL 90 GH S S A + + HF + ++ + G D + GHAS Y + + G LT Sbjct 105 GHIASFASSATLYEVGFNHFFR-AKSEKD--GGDL-VFFQGHASPGIYARAFLEGR-LTE 159 Query 91 DDLKNFRGGADTRT-PGHPEYGLTPG-IEMTTGPLGQGFASAIGFAYGQRFQ-----RGL 143 + L NFR D + +P L P + T +G G AI Y RF RGL Sbjct 160 EQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAI---YQARFLKYLEARGL 216 Query 144 LDPEAPEGESPFDHNIWVICGEGDIEEGISGEAASLAANQQLGNLTVIFDANRIQIEGDT 203 D D +W G+G+++E S A + AA ++L NL + + N +++G Sbjct 217 KDTS--------DQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 Query 204 --NLVLAEDVLKRFQAYGW 220 N + +++ F+ GW Sbjct 269 RGNGKIIQELEGIFRGAGW 287 >CDD:224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]. Length=627 Score = 61.4 bits (150), Expect = 1e-10, Method: Composition-based stats. Identities = 53/216 (25%), Positives = 87/216 (40%), Gaps = 26/216 (12%) Query 496 VGEDGPTHQPVEHLASFRAIPQLEVARPADAYETAEAYRYFFEKKNTLPTAMVLTR-QGV 554 VG DGPTHQ + L+ R IP + + P D E + + + P A+ R GV Sbjct 421 VGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG-PVAIRYPRGNGV 479 Query 555 PVLAETAEKAKDGVKKGAYVLVDTEGTPDVIIMATGSEVQWAVSAAKTLAGEGIKARVVS 614 V+ + + G L+ EG V I+A G+ + A+ A+ L GI VV Sbjct 480 GVILTPELEPLEI---GKGELL-KEGE-KVAILAFGTMLPEALKVAEKLNAYGISVTVVD 534 Query 615 VPCVEWFEEQDAEYKEAVLPAAVKAR--VSVEAGVAMPWY-----KYLGSYGKPVSIEQF 667 V+ +E +L A V++E V + ++L ++G V + Sbjct 535 PRFVKPLDE------ALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNL 588 Query 668 GL------QGDGAQNMIDLGITAEHVVEAAKASIAE 697 GL G + + +LG+ AE + + Sbjct 589 GLPDEFIDHGSPEELLAELGLDAEGIARRILEWLKA 624 Lambda K H a alpha 0.315 0.133 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 644461415 Query= BifidoAdolescentis.s2#1#35132#ORF37 Transaldolase Length=367 Score E Sequences producing significant alignments: (Bits) Value CDD:223254 COG0176, MipB, Transaldolase [Carbohydrate transport a... 157 5e-47 >CDD:223254 COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]. Length=239 Score = 157 bits (399), Expect = 5e-47, Method: Composition-based stats. Identities = 83/350 (24%), Positives = 116/350 (33%), Gaps = 114/350 (33%) Query 12 GVSIWLDDLSRSRIESGSLQDLIANKNVVGVTTNPSIFQKALHEVGPYDPQLKELGKVDV 71 G+S W +L + ++ L+ V GVTTNPS+ KA Sbjct 3 GLSQW-MELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKA------------------- 42 Query 72 ETAVRELTTTDVRNATDIFREVAEKSDFVDGRVSIEVDPRLAHETEATEKQAEELWAKVN 131 D E V GRV EVD L+ + EA ++A L ++ Sbjct 43 -----------GAKPRDAVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLID 90 Query 132 RPNAMIKIPATLEGLPAITATLAKGISVNVTLIFSLERYEQVIDAYIEGIAQADANGHDL 191 +IKIPAT EGL AI A A+GI NVTLIFS + A + A A Sbjct 91 NVGIVIKIPATWEGLKAIKALEAEGIKTNVTLIFSAAQ------ALLAAEAGAT------ 138 Query 192 KHIGSVASFFVSR-VDTAVDKLLEANGSDEAKALEGKAAVANARLAYELFENKFANDPRW 250 S FV R D +D G +A AR Y+ ++ Sbjct 139 -----YISPFVGRIDDWGID---------------GMLGIAEAREIYDYYKQHG------ 172 Query 251 AALEAKGAKKQRPLWASTGTKNAAYSDCKYVDELVAPFVVNTMPEKTLNALADHGNGAPS 310 A T +A + + Y+ L V T+P L L HG Sbjct 173 ---------------AKTLVASARFPNHVYIAALAGA-DVLTIPPDLLKQLLKHGG---- 212 Query 311 IKGTYEESHAIMNKLADLGINIKDVTDKLEADGVAAFIKSWDTVLADVQA 360 + L +G+ F K W+ +L + Sbjct 213 -----------------------AMAVPLLDEGIRKFAKDWEKLLKSLSE 239 Lambda K H a alpha 0.313 0.129 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 303235530 Query= BifidoAdolescentis.s2#1#35132#ORF38 Glutamate-pyruvate aminotransferase AlaA Length=405 Score E Sequences producing significant alignments: (Bits) Value CDD:223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotra... 363 8e-125 CDD:223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotran... 123 6e-33 CDD:224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with ... 119 5e-31 CDD:224089 COG1167, ARO8, Transcriptional regulators containing a... 107 2e-26 CDD:224919 COG2008, GLY1, Threonine aldolase [Amino acid transpor... 59.6 1e-10 CDD:223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent... 56.5 1e-09 CDD:223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfura... 53.5 1e-08 >CDD:223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]. Length=393 Score = 363 bits (934), Expect = 8e-125, Method: Composition-based stats. Identities = 140/404 (35%), Positives = 209/404 (52%), Gaps = 21/404 (5%) Query 8 HKLDNVLYDVRGPVADEAARMEAAG--THILKLNIGNPAPFGFRTPDEVVYDMSQQLPDT 65 +L VL V EA ++ L+IG P F TP+ ++ + L + Sbjct 1 SRLLKVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEP---DFPTPEHIIEAAIEALEEG 57 Query 66 E-GYSPSKGLFSARKAIMQ-YAQLKNIPNVSIDDIYTGNGVSELINLSLSALLDNGDEVL 123 Y+PS G+ R+AI + Y + + ++I G E + L+ ALL+ GDEVL Sbjct 58 GTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVL 117 Query 124 VPSPDYPLWTACVNLAGGTAVHYVCD-EDSEWYPDIDDMRSKITDKTKAIVIINPNNPTG 182 +P P YP + A V LAGG V D E++ + PD++D+ + IT KTKAI++ +PNNPTG Sbjct 118 IPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTG 177 Query 183 ALYPKEVLQQIVDLAREHQLMIFSDEIYDRLVMDGLEHISIASLAPDL-FCVTFSGLSKS 241 A+Y KE L+ IV+LAREH ++I SDEIY+ LV DG EH SI LA +T + SK+ Sbjct 178 AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKT 237 Query 242 HMIAGWRVGWMVLSGNKRLAKDYIEGLNMLANMR-MCSNVPAQSVVQTALGGHQSVKDYL 300 + + GWR+GW+V ++ I L L + C+ PAQ AL G QS + Sbjct 238 YGMTGWRIGWVVGPP-----EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVE 292 Query 301 VPGGRIYDQRELVYNMLNDIPGITAVK-PKAAFYIFPKIDVKKFNIHSDEQFALDLLHDK 359 ++R+L+ LN+I G++ VK P+ AFY+FPKI E+FA LL + Sbjct 293 EMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL----DSEEFAKKLLEEA 348 Query 360 HILISHGGAFNWQE-PDHFRVVYLPRISMLKETIGEIGDFFSTY 402 + + G F + R+ L+E + + F + Y Sbjct 349 GVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 >CDD:223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]. Length=356 Score = 123 bits (312), Expect = 6e-33, Method: Composition-based stats. Identities = 95/357 (27%), Positives = 159/357 (45%), Gaps = 50/357 (14%) Query 25 AARMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMSQQLPDTEGYSPSKGLFSARKAIMQY 84 + I+KL+ N P+G P +V+ + L Y P R A+ +Y Sbjct 14 PGARQYGLPGIIKLSS-NENPYGP--PPKVIEAIRAALDKLNRY-PDPDYRELRAALAEY 69 Query 85 AQLKNIPNVSIDDIYTGNGVSELINLSLSALLDNGDEVLVPSPDYPLWTACVNLAGGTAV 144 + V +++ GNG ELI L + A ++ GD VL+P P + ++ LAG V Sbjct 70 YGV-----VDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVV 124 Query 145 HYVCDEDSEWYPDIDDMRSKITDKTKAIVIINPNNPTGALYPKEVLQQIVDLAREHQLMI 204 E + D+D + + I DKTK + + NPNNPTG L P+E L+ +++ E L + Sbjct 125 KVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGL-V 180 Query 205 FSDEIYDRLVMDGLEHISIASLA--PDLFCV-TFSGLSKSHMIAGWRVGWMVLSGNKRLA 261 DE Y ++ S+ L P+L + TF SK+ +AG RVG+ + + Sbjct 181 VIDEAY----IEFSPESSLELLKYPPNLIVLRTF---SKAFGLAGLRVGYAIAN------ 227 Query 262 KDYIEGLNMLA---NMRMCSNVPAQSVVQTALGGHQSVKDYLVPGGRIYDQRELVYNMLN 318 + I LN + N+ + PA + AL +++ + RI ++RE +Y L Sbjct 228 PELIAALNKVRPPFNV----SSPALAAAIAALRDADYLEESVE---RIREERERLYAALK 280 Query 319 DIPGITAVKPKAAFYIFPKIDVKKFNIHSDEQFALDLLHDKHILI----SHGGAFNW 371 + G+ V P A ++ + V ++ + L K IL+ S G + Sbjct 281 AL-GLFGVFPSQANFVL--VRVPD----AEAAALAEALLKKGILVRDCSSVGLLPGY 330 >CDD:224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]. Length=388 Score = 119 bits (300), Expect = 5e-31, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 161/345 (47%), Gaps = 22/345 (6%) Query 44 APFGFRTPDEVVYDMSQQLPDTE-GYS-PSKGLFSARKAIMQYAQLKNIPNVSIDDIYTG 101 A F TP E++ + +++ GY S L+ AI + + ++ + + I Sbjct 33 ADMDFPTPPEIIEALRERVDHGVFGYPYGSDELY---AAIAHWFKQRHQWEIKPEWIVFV 89 Query 102 NGVSELINLSLSALLDNGDEVLVPSPDYPLWTACVNLAGGTAVHYVCD---EDSEWYPDI 158 GV I+L++ AL GD V++ +P YP + + L G + +D + D Sbjct 90 PGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIE--NPLVEDDGRYEIDF 147 Query 159 DDMRSKITD-KTKAIVIINPNNPTGALYPKEVLQQIVDLAREHQLMIFSDEIYDRLVMDG 217 D + D + K ++ NP+NPTG ++ KE L++I +L H + + SDEI+ LV+ G Sbjct 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 Query 218 LEHISIASLAPDL--FCVTFSGLSKSHMIAGWRVGWMVLSGNKRLAKDYIEGLNMLANMR 275 +HI ASL+ +T + SK+ +AG + ++++S N+ L +++ + N Sbjct 208 HKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIIS-NRELRAKFLK--RLKRNGL 264 Query 276 MCSNVPAQSVVQTALGGHQSVKDYLVPGGRIYDQRELVYNMLND-IPGITAVKPKAAFYI 334 + + A + D L+ + D R+ V + LN +PG+ +P+ + Sbjct 265 HGPSALGIIATEAAYNQGEPWLDELLEY--LKDNRDYVADFLNKHLPGVKVTEPQGTYLA 322 Query 335 FPKIDVKKFNIHSDEQFALDLLHDKHILISHGGAFNWQEPDHFRV 379 + +D ++ + D + A LL + + +S G F + R+ Sbjct 323 W--LDCRELGL-DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRL 364 >CDD:224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]. Length=459 Score = 107 bits (269), Expect = 2e-26, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 147/385 (38%), Gaps = 46/385 (12%) Query 35 ILKLNIGNPAP--FGFRT-PDEVVYDMSQQLPD-TEGYSPSKGLFSARKAIMQYAQLKNI 90 ++ G P P F + + Y P+ GL R+AI Y + Sbjct 91 VIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRG 150 Query 91 PNVSIDDIYTGNGVSELINLSLSALLDNGDEVLVPSPDYPLWTACVNLAGGTAVHYV--- 147 + + I +G + ++L L LLD GD VLV P YP + G + Sbjct 151 ISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALG---ARVIPVP 207 Query 148 CDEDSEWYPDIDDMRSKITDKTKAIVIINPN--NPTGALYPKEVLQQIVDLAREHQLMIF 205 DED D + + + V + P NPTG E + ++ LA ++ ++I Sbjct 208 VDEDG---IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLII 264 Query 206 SDEIYDRLVMDGLEHISIASLAPD---LFCVTFSGLSKSHMIAGWRVGWMVLSGNKRLAK 262 D+ Y L DG + +L ++ +F SK+ + G R+G++V Sbjct 265 EDDYYGELRYDGPPPPPLKALDAPGRVIYLGSF---SKT-LAPGLRLGYVVAP------P 314 Query 263 DYIEGLNMLANMRMC-SNVPAQSVVQTAL--GGHQSVKDYLVPGGRIYDQR-ELVYNMLN 318 + IE L L + +Q+ + L G + L R Y +R + + L Sbjct 315 ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLR---REYARRRDALLEALA 371 Query 319 DI--PGITAVKPKAAFYIFPKIDVKKFNIHSDEQFALDLLHDKHILISHGGAFNWQEPDH 376 + T +P+ +++ +++ + D + L +K ++++ G+ + D Sbjct 372 EYLPELATWTRPEGGLFLW--LELPE---GIDARELLAAALEKGVVVTPLGSAFSADGDP 426 Query 377 ---FRVVY-LPRISMLKETIGEIGD 397 R+ + P ++E I + Sbjct 427 RNGLRLSFSSPSEEEIEEGIKRLAA 451 >CDD:224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Length=342 Score = 59.6 bits (145), Expect = 1e-10, Method: Composition-based stats. Identities = 37/169 (22%), Positives = 62/169 (37%), Gaps = 29/169 (17%) Query 110 LSLSALLDNGDEVLVPSPDYPLWTACVNL--AGGTAVH-----YVCDEDSEWYPDIDDMR 162 L+L+A G+ V+ TA + G ++ +D+ Sbjct 65 LALAAHCQPGESVICHE------TAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVE 118 Query 163 SKITDK------TKAIVIINPNNPTGALYPKEVLQQIVDLAREHQLMIFSD--EIYDRLV 214 + I T V+ N G +YP + L+ I + +EH L + D + + LV Sbjct 119 AAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALV 178 Query 215 MDGLEHISIASLAPDLFCVTFSGLSKSHMIAGWRVGWMVLSGNKRLAKD 263 G+ +I S D L+K G VG ++ GN+ AK Sbjct 179 ALGVALKTIKSYV-DSVSF---CLTKG---GGAPVG-AIVFGNRDFAKR 219 >CDD:223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]. Length=374 Score = 56.5 bits (137), Expect = 1e-09, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 56/115 (49%), Gaps = 21/115 (18%) Query 100 TGNGVSELINLSLSAL-LDNGDEVLVPSPDYPLWTA-CVNLAGGTAVHYV-CDEDSEWYP 156 +G + L +L+L AL + GDEV+VPS + TA V L G V +V D D+ Sbjct 55 VSSGTAAL-HLALLALAIGPGDEVIVPSFTFV-ATANAVLLVGAKPV-FVDIDPDT-LNI 110 Query 157 DIDDMRSKITDKTKAIVII----NPNNPTGALYPKEVLQQIVDLAREHQLMIFSD 207 D D + + IT +TKAI+ + P + + I+ LA+ H L + D Sbjct 111 DPDLIEAAITPRTKAIIPVHLAGQPCD----------MDAIMALAKRHGLPVIED 155 >CDD:223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]. Length=405 Score = 53.5 bits (129), Expect = 1e-08, Method: Composition-based stats. Identities = 39/140 (28%), Positives = 64/140 (46%), Gaps = 21/140 (15%) Query 77 ARKAIMQYAQLKNIPNVSIDDIYTGNGVSELINL---SLSALLDNGDEVLVPSPDYP--- 130 AR+A+ A+ N S D+I G +E +NL L L GDE++V ++ Sbjct 71 AREAV---ARFLNAD--SSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNI 125 Query 131 ---LWTACVNLAGGTAVHYVCDEDSEWYPDIDDMRSKITDKTKAIVIINPNNPTGALYPK 187 A G V + D + D+D + IT KTK + + + +N TG + P Sbjct 126 VPWQELAK---RTGAKVRVI-PLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNP- 180 Query 188 EVLQQIVDLAREHQLMIFSD 207 +++I +LA EH ++ D Sbjct 181 --VKEIAELAHEHGALVLVD 198 Lambda K H a alpha 0.320 0.138 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0784 0.140 1.90 42.6 43.6 Effective search space used: 341613726 Query= BifidoAdolescentis.s6#1#42067#ORF1 hypothetical protein Length=83 ***** No hits found ***** Lambda K H a alpha 0.322 0.132 0.457 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37198170 Query= BifidoAdolescentis.s6#1#42067#ORF2 NADPH-dependent oxidoreductase Length=259 Score E Sequences producing significant alignments: (Bits) Value CDD:223849 COG0778, NfnB, Nitroreductase [Energy production and c... 101 5e-27 >CDD:223849 COG0778, NfnB, Nitroreductase [Energy production and conversion]. Length=207 Score = 101 bits (252), Expect = 5e-27, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 17/205 (8%) Query 7 NATVDTLLERRSIRKFK-PKPLPDDVVETLETVAQHAASSQFLNDWSAIRVTEPAAKK-R 64 ++ + RRSIRKF PKP+P++ +E + A+ A S+ L W I V + K Sbjct 3 MDILEAIRSRRSIRKFDSPKPIPEEDLEKILEAARLAPSAGNLQPWRFIVVRDEDELKAA 62 Query 65 LAEI--GGQPYIATAPLLYVFVLDEHRNAAIAARKGVEVASDAFTLNGSYR--------- 113 LAE+ GGQ + A L + D +A + ++ + F L + Sbjct 63 LAELAGGGQAQLKEASALLAVLADLESLDKVAEGRAPDLGAAVFLLAERRKLLGYGRRAA 122 Query 114 FTQAQNDAVLALHAMETAAYSLGLGCVILGSLLND--VPALIDLLNLPEYTYPVLGIAIG 171 A + A +A + AA +LGLG +G + L +LL LPE PV +A+G Sbjct 123 LEYALDAASIAAQNLLLAAEALGLGSCWIGGFDAEDLKELLRELLGLPEEEKPVGLLALG 182 Query 172 KPDQEPAV--KPRMPRSMQFFENEY 194 P +EP KPR+P Y Sbjct 183 YPAEEPPPRLKPRLPLEEVVHYESY 207 Lambda K H a alpha 0.317 0.133 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 192499824 Query= BifidoAdolescentis.s6#1#42067#ORF3 hypothetical protein Length=125 ***** No hits found ***** Lambda K H a alpha 0.317 0.130 0.358 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 58017906 Query= BifidoAdolescentis.s6#1#42067#ORF4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Length=234 Score E Sequences producing significant alignments: (Bits) Value CDD:223483 COG0406, phoE, Broad specificity phosphatase PhoE and ... 123 6e-36 CDD:223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate... 82.3 6e-20 CDD:224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Sign... 51.1 4e-09 >CDD:223483 COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]. Length=208 Score = 123 bits (311), Expect = 6e-36, Method: Composition-based stats. Identities = 70/219 (32%), Positives = 99/219 (45%), Gaps = 28/219 (13%) Query 18 RLVLLRHGQTVWSESGQHTGRTNIPLTDIGCDQARAAGERLREAFPQGFAQGCMFASPLR 77 RL L+RHG+T W+ G+ G T+ PLT+ G QA A ERL A GF ++SPL+ Sbjct 4 RLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLA-ARDIGFDAI--YSSPLK 60 Query 78 RAQQTAQ-LAGY--GDFKVLPEIAEWDYGRAEGRTRQDVSAAGGFAWDVWRDGPRSLPES 134 RAQQTA+ LA +V + E D+G EG T +++ W P P Sbjct 61 RAQQTAEPLAEELGLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPP- 119 Query 135 LEGDWVETLPNGEQVPVHNGPGETVEEAAARTREAIATVKPLLDAGNDVLLVAHAHVLRI 194 GE++ + + R A+A + GN+VL+V+H V+R Sbjct 120 -------------------PGGESLADVSKRVVAALAELLRSPP-GNNVLVVSHGGVIRA 159 Query 195 LTSQWLGVDPHFARLLRLDTAHYCVLSQYKGDNVIEHWN 233 L + LG+D LRLD A VL + I Sbjct 160 LLAYLLGLDLEELWRLRLDNASVTVLE-FDDGRFIRTLG 197 >CDD:223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]. Length=230 Score = 82.3 bits (204), Expect = 6e-20, Method: Composition-based stats. Identities = 57/198 (29%), Positives = 91/198 (46%), Gaps = 33/198 (17%) Query 19 LVLLRHGQTVWSESGQHTGRTNIPLTDIGCDQARAAGERLREAFPQGFAQGCMFASPLRR 78 LVLLRHGQ+ W++ TG ++ LT+ G +A+AAG+ L+E G + S L+R Sbjct 4 LVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE---GLEFDIAYTSVLKR 60 Query 79 AQQTAQLA-GYGDFKVLPEIAEW-----DYGRAEGRTRQDVSAAGGFAWD----VWRDGP 128 A +T + D +P I W YG +G + + +A G + +WR Sbjct 61 AIKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYG---EEQVLIWR--- 114 Query 129 RSL----PESLEGD--WVETLPNGEQVPVHNGP-GETVEEAAART----REAIATVKPLL 177 RS P+ + D + + P E++++ R + IA P L Sbjct 115 RSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIA---PNL 171 Query 178 DAGNDVLLVAHAHVLRIL 195 +G +VL+VAH + LR L Sbjct 172 KSGKNVLIVAHGNSLRAL 189 >CDD:224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]. Length=163 Score = 51.1 bits (123), Expect = 4e-09, Method: Composition-based stats. Identities = 27/85 (32%), Positives = 37/85 (44%), Gaps = 7/85 (8%) Query 18 RLVLLRHGQTVWSESGQHTGRTNIPLTDIGCDQARAAGERLREAFPQGFAQGCMFASPLR 77 RL L+RHG+ W+ G PLT+ G +A L QG + SP Sbjct 3 RLYLMRHGKAEWAAPGIADFDR--PLTERGRKEAELVAAWLAG---QGVEPDLVLVSPAV 57 Query 78 RAQQTA-QLAGYGDFKVLPEIAEWD 101 RA+QTA +A + K E+ E Sbjct 58 RARQTAEIVAEHLGEKK-VEVFEEL 81 Lambda K H a alpha 0.318 0.135 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 166990544 Query= BifidoAdolescentis.s6#1#42067#ORF5 hypothetical protein Length=465 Score E Sequences producing significant alignments: (Bits) Value CDD:224567 COG1653, UgpB, ABC-type sugar transport system, peripl... 127 3e-33 CDD:225093 COG2182, MalE, Maltose-binding periplasmic proteins/do... 64.3 5e-12 >CDD:224567 COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]. Length=433 Score = 127 bits (320), Expect = 3e-33, Method: Composition-based stats. Identities = 90/445 (20%), Positives = 152/445 (34%), Gaps = 32/445 (7%) Query 32 VGMVAIAAMSVGTLAACGGSSSSSDNGKGKVYFLNFKPESSDEWKKLAKDYTKE-TGVEV 90 ++ + + LAACG +++S+ + E +D ++L K++ KE G++V Sbjct 5 SKLLLLLLAAALGLAACGSAAASAAGVTITFWHSWTGGEEADALEELIKEFEKENPGIKV 64 Query 91 KVQTAASGTYEQTLKSEIAKSEAPTLFQVNGPVG--YQNWSSYTEDMSDTEPYKQLINKD 148 KV Y Q L + +A +AP + Q++ + ED++D K ++ Sbjct 65 KVVNVPGDDYLQKLLTALASGDAPDVVQLDPEWLAAFAKAGGLLEDLTDLINPKLDLSDF 124 Query 149 V-----ALKDGDKVVGVPYAMETYGLIYNKDLLAKYIATDGAKIKSVDDIDNFDTLKAVA 203 K+ GVP+ T L YNKDL K K +D L A A Sbjct 125 PPALLDTTTYDGKLYGVPFNSSTPALFYNKDLFKKAGLKPPPK--------TWDELLAAA 176 Query 204 DDIQAKKDQLGVKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTK--QPETIKGTY 261 ++ K A + F L + KD PE ++ Sbjct 177 KKLKEKGGD-VYGIAGGGGWQGEDLFFTFALFLGGAGGGFLDKDGGEAFLNDPEAVEA-- 233 Query 262 LPEYKNIFDLYLKDSTTEPTQLSSKTGDDSTSEFSLGEAAFYQNGTWAWTDLQKAGMKAE 321 + + DLY K + D F G+ A +GTWA +KA Sbjct 234 ---LEFLKDLYKKGLLPKGAS-GYGWDDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKF 289 Query 322 SVGMIPIYTGVKGEKNQGLATGSENYWCINSKASDADKKATKDFLKWVVTSKTGIKSLSS 381 +G+ P+ G G G SK S K+A FL+++ + + + L+ Sbjct 290 DIGVAPLPAGPGGGG-AAGGVGGGGLG--VSKKSKKHKEAAWKFLEFLTSPEAQAELLAK 346 Query 382 DMGFTTPFKSF--SDVKSDNPLVQAAVDDQNSGKTAVSWNFTM--MPSEEWKNKLGSALL 437 G KS + P + A+ + + + E + A+ Sbjct 347 VTGGLPVRKSAYDDPYDKEAPALLKALAEALATAVPAPPIAGLPVFNPIELADITYDAIE 406 Query 438 EYAQGTGDWNAVKKAFVDGWKTEYD 462 G D KA + Sbjct 407 AILTGQKDPEEALKAAQKALEAALK 431 >CDD:225093 COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]. Length=420 Score = 64.3 bits (157), Expect = 5e-12, Method: Composition-based stats. Identities = 70/359 (19%), Positives = 130/359 (36%), Gaps = 42/359 (12%) Query 28 IKAAVGMVAIAAMSVGTLAAC-----GGSSSSSDNGKGKVYFLNFKPESSDEWKKLAKDY 82 +K + + +A +++ LAAC S SS + K+ + D K+ A + Sbjct 4 LKKVLILAVVAVLALSALAACTSSSSTTKSLSSTIAEKKLTVWVDGEKEVDGIKEAAAKF 63 Query 83 TKETGVEVKVQTAASGTYEQTLKSEIAKSEAPTLF-QVNGPVGYQNWSSYTEDMSDTEPY 141 KETG++VK+ + + P +F + +G + ++ Sbjct 64 EKETGIKVKIVEEDYDDLLEKFLLAAPAGQGPDIFVWAHDRIGGLAEAGLLLEIDPYATK 123 Query 142 KQLINKDVALKD---GDKVVGVPYAMETYGLIYNKDLLAKYIATDGAKIKSVDDIDNFDT 198 AL K+ G+P A+ET L YNKDL+ + T ++ Sbjct 124 YTDFY-PAALVAATYKGKLYGLPQAVETLALYYNKDLVPEPPKT-------------WEE 169 Query 199 LKAVADDIQAKKDQLGVKGAFTSAGFDSSSDWRFKT--HLANLPLYYEFKDDNVTKQPET 256 L+A+A + + K F S ++ D Sbjct 170 LEALAKEAKDKGWGKSHGFLADLTNFYYSYGLIAGYGGYVFGKENGKYDPKDIGLANAGA 229 Query 257 IKGTYLPEYKNIFDLYLKDSTTEPTQLSSKTGDDSTSEFSLGEAAFYQNGTWAWTDLQKA 316 I+G +LK + GD + S F+ G+AA NG W+ + + A Sbjct 230 IEGAN----------FLKSWYKKGLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYKDA 279 Query 317 GMKAESVGMIPIYTGVKGEKNQGLATGSENYWCINSKASDADKKATKDFLKWVVTSKTG 375 G + G+ P+ T G+K + + + +++ + +K+A F+K+ K Sbjct 280 G---INYGVAPLPTLNNGKKPKPFSGVK--GYVVSAAS--KNKEAAAKFVKYFTNPKNQ 331 Lambda K H a alpha 0.310 0.127 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 403157768 Query= BifidoAdolescentis.s6#1#42067#ORF6 HTH-type transcriptional repressor CytR Length=337 Score E Sequences producing significant alignments: (Bits) Value CDD:224525 COG1609, PurR, Transcriptional regulators [Transcription] 234 6e-76 CDD:224791 COG1879, RbsB, ABC-type sugar transport system, peripl... 56.7 5e-10 >CDD:224525 COG1609, PurR, Transcriptional regulators [Transcription]. Length=333 Score = 234 bits (598), Expect = 6e-76, Method: Composition-based stats. Identities = 107/338 (32%), Positives = 174/338 (51%), Gaps = 14/338 (4%) Query 5 SIQDVAQLAHVSISTVSRSFTRPDLVSKATRDKVMKAADELNFSISRSAAALKTGRALRI 64 +I+DVA+LA VS +TVSR VS+ TR+KV+ A EL + + A +L+TGR I Sbjct 2 TIKDVAKLAGVSKATVSRVLNGSPYVSEETREKVLAAIKELGYRPNAVARSLRTGRTKTI 61 Query 65 AVLVSGRLNLWFSSSIIEGLNEVFHDEGYDISIYQ-MSSTEERSEFFDMLPVRRNVDAVI 123 ++V N +F + I++G+ E + GY + + E+ E+ + L +++ VD +I Sbjct 62 GLVVPDITNPFF-AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETL-LQKRVDGLI 119 Query 124 VISFDIASNEIRQLRSVDVPIIGINSSLPEERGFNAAVRIDDKQGSELAARHLMMLGHRD 183 ++ + + L + +P++ I+ S P +V ID+ G+ LA HL+ LGHR Sbjct 120 LLGERPNDSLLELLAAAGIPVVVIDRSPPGLG--VPSVGIDNFAGAYLATEHLIELGHRR 177 Query 184 IVYIRSDREVTLHFSVQGRYESFMACCQANGVEPRV-LVTDAGRNRIS--KVVTQLLSLD 240 I +I + + + + R E + A + G+ + + + S + +LL+ Sbjct 178 IAFIGGPLDSS---ASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARG 234 Query 241 H-MPTAIACQEDGIAVPLLFQLERNGFTVPNDISIIGYDDSVYARDLG--LTTIRQTPVE 297 PTAI C D +A+ L L G VP D+S+IG+DD AR L LTT+RQ E Sbjct 235 EPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDDIELARFLTPPLTTVRQPIEE 294 Query 298 MAREAARMTLALIEKQPLDEPFKTFPAQLIVRSTTARL 335 + R AA + L I +P+ P +LIVR +TA Sbjct 295 LGRRAAELLLERINGEPVPPRRIVLPPELIVRESTAPP 332 >CDD:224791 COG1879, RbsB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]. Length=322 Score = 56.7 bits (137), Expect = 5e-10, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 123/321 (38%), Gaps = 24/321 (7%) Query 28 DLVSKATRDKVMKAADELNFSISRSAAALKTGRALRIAVLVSGRLNLWFSSSIIEGLNEV 87 D++ KA AA + + +AAA G I V+V N +F + + +G Sbjct 2 DMMKKAGVSLAALAAALALAAAASAAAAAAAG--KTIGVVVPTLGNPFFQA-VRKGAEAA 58 Query 88 ---FHDEGYDISIYQMSSTEERSEFFDMLPVRRNVDAVIVISFD--IASNEIRQLRSVDV 142 + + ++ + L + + VDA+I+ D + +++ ++ + Sbjct 59 AKKLGVVVAVVIADAQNDVAKQIAQIEDL-IAQGVDAIIINPVDPDALTPAVKKAKAAGI 117 Query 143 PIIGINSSLPEERGFNAAVRIDDKQGSELAARHL--MMLGHRDIVYIRSDREVTLHFSVQ 200 P++ ++S +P A V D+ + LAA +L + G +V + + + Sbjct 118 PVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGSPGNSSA---E 174 Query 201 GRYESFMACCQANGVEPRVLVTDAGRNRISK---VVTQLLSLDHMPTAIACQEDGIAVPL 257 R + F + + + V+ G K V+ LL+ + I DG+A+ Sbjct 175 ERVKGFRDALKEHPPDIEVVDVQTGDWDRDKALEVMEDLLAANPDIDGIYAANDGMALGA 234 Query 258 LFQLERNGFTVPNDISIIGYDDSVYARDL-----GLTTIRQTPVEMAREAARMTLALIEK 312 + L+ G D+ ++G+D + A T+ Q P A + L L++ Sbjct 235 IQALKAAGRK--GDVVVVGFDGTPDALKALKDGKLDATVLQDPAAQGAAAVELALKLLKG 292 Query 313 QPLDEPFKTFPAQLIVRSTTA 333 + P +L+ + Sbjct 293 KKKVPKQVLVPFELVTKDNVD 313 Lambda K H a alpha 0.321 0.134 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 273168756 Query= BifidoAdolescentis.s6#1#42067#ORF7 Melibiose/raffinose/stachyose import permease protein MelD Length=284 Score E Sequences producing significant alignments: (Bits) Value CDD:224096 COG1175, UgpA, ABC-type sugar transport systems, perme... 177 2e-55 CDD:224097 COG1176, PotB, ABC-type spermidine/putrescine transpor... 79.2 5e-18 CDD:224098 COG1177, PotC, ABC-type spermidine/putrescine transpor... 73.4 4e-16 CDD:226666 COG4209, LplB, ABC-type polysaccharide transport syste... 73.1 8e-16 CDD:224099 COG1178, ThiP, ABC-type Fe3+ transport system, permeas... 70.0 2e-14 CDD:223472 COG0395, UgpE, ABC-type sugar transport system, permea... 59.5 3e-11 CDD:226354 COG3833, MalG, ABC-type maltose transport systems, per... 59.2 4e-11 CDD:226616 COG4132, COG4132, ABC-type uncharacterized transport s... 52.1 9e-09 CDD:223629 COG0555, CysU, ABC-type sulfate transport system, perm... 50.3 4e-08 >CDD:224096 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length=295 Score = 177 bits (452), Expect = 2e-55, Method: Composition-based stats. Identities = 88/296 (30%), Positives = 151/296 (51%), Gaps = 15/296 (5%) Query 1 MISMAGKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVT-DAEFVGLKNYKR 59 + + + L P ++ F+ P I+ +YLSF + + + FVGL NY+R Sbjct 2 SRERRSRRLLPY--LLLAPALLLLLVFFLYPLILTLYLSFTNYDLLGPPSTFVGLANYER 59 Query 60 AFADKEFLHALGFSTALTIITTIVINVVAFAIAYMLTKAIKGSNIFRSVFFMPNLIGGII 119 F+D F +AL + T+I+ + V+ +A +L + ++G FR++FF+P I ++ Sbjct 60 LFSDPTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVV 119 Query 120 LGYIWMLLLN---GILAHWGRAL--------TYSATYGFWGLVILVCWQQIGYMMIIYIA 168 G IW L N G+L L + ++I+ W+ G++M++++A Sbjct 120 AGLIWKWLFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLA 179 Query 169 GMQSLPTDVLEAASVDGANGTQTMFKIIIPLMMPSITVCSFLCVTNGFKLYDQNLALTNG 228 G+QS+P ++ EAA +DGA+ Q KI +PL+ P I L F+++D LT G Sbjct 180 GLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLTGG 239 Query 229 APSNMSEGLAMNITRTFYGRMGWEGVGQAKAVLFFILVAIVALIQNKLTTSKEVEA 284 P N + LA I RT +G + + G A AV+ F++V I+ ++Q +L KE Sbjct 240 GPGNATTTLAYYIYRTAFGGLDF-GYAAAIAVILFLIVLILTVVQLRLLRRKERRV 294 >CDD:224097 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]. Length=287 Score = 79.2 bits (196), Expect = 5e-18, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 16/216 (7%) Query 4 MAGKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVGLKNYKRAFAD 63 A W L F ++ ++P + LSF F L NY R D Sbjct 10 ALLIAPPLLWLLLF---FLLPLLIVLVPSFLLPLLSF----FDYSGVF-TLGNYARLLTD 61 Query 64 KEFLHALGFSTALTIITTIVINVVAFAIAYMLTKAI-KGSNIFRSVFFMPNLIGGIILGY 122 +L L S + + T++ ++ + +AY L ++ + N+ + +P +I Y Sbjct 62 SLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTY 121 Query 123 IWMLLL--NGILAHWGRAL-----TYSATYGFWGLVILVCWQQIGYMMIIYIAGMQSLPT 175 W+++L NG++ AL Y ++I + + + +M++ A ++ + Sbjct 122 AWIVILGRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDP 181 Query 176 DVLEAASVDGANGTQTMFKIIIPLMMPSITVCSFLC 211 +LEAA GA+ QT ++I+PL +P I S L Sbjct 182 SLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLV 217 >CDD:224098 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length=267 Score = 73.4 bits (181), Expect = 4e-16, Method: Composition-based stats. Identities = 48/219 (22%), Positives = 92/219 (42%), Gaps = 22/219 (10%) Query 4 MAGKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSF--CKFTTVTDAEFVGLKNYKRAF 61 M + I L A ++ +P ++ V SF + V F LK Y F Sbjct 2 MKRRRIWARIFLKLY--LALVLLFLYLPLLVLVLYSFNSSRLGLVFPPGF-SLKWYGALF 58 Query 62 ADKEFLHALGFSTALTIITTIVINVVAFAIAYMLTKA-IKGSNIFRSVFFMPNLIGGIIL 120 +D L AL S + +++ ++ ++ A L + +G N+ + +P ++ I+ Sbjct 59 SDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVT 118 Query 121 GYIWMLLLNGILAHWGRALTYSATYGFWGLVI---LVCWQQIGYMMIIYIAGMQSLPTDV 177 G +LL + GFW +V+ + + +++++ A +Q + Sbjct 119 GIALLLLFAAL----------GLPGGFWTIVLAHIVFA---LPFVVVVVSARLQGFDRSL 165 Query 178 LEAASVDGANGTQTMFKIIIPLMMPSITVCSFLCVTNGF 216 EAA GA+ QT ++ +PL++P I + L T F Sbjct 166 EEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSF 204 >CDD:226666 COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]. Length=309 Score = 73.1 bits (180), Expect = 8e-16, Method: Composition-based stats. Identities = 66/293 (23%), Positives = 126/293 (43%), Gaps = 30/293 (10%) Query 11 KWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFT---TVTDAEFVGLKNYKRAFADKEFL 67 K L LP F+I IP + G ++F + ++T +E+VGLKN+K F+ +F Sbjct 20 KALLLMVLPGLIWFLIFKYIP-MFGNVIAFKDYRPFLSITGSEWVGLKNFKFLFSSPDFF 78 Query 68 HALGFSTALTIITTIVINVVAFAIAYMLTKAIKGS--NIFRSVFFMPNLIGGIILGYIWM 125 L + +++ I+ V +A +L + + +++ ++P+ + +++ Sbjct 79 IILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKVVQTISYLPHFLSWVVVSGFVF 138 Query 126 LLLN---GILAHWGRALT------YSATYGFWGLVIL-VCWQQIGYMMIIYIAGMQSLPT 175 L+ GI+ +L + F ++I W+ G+ IIY+A + + Sbjct 139 AFLSIDGGIINQLLMSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDP 198 Query 176 DVLEAASVDGANGTQTMFKIIIPLMMPSITVCSFLCVTNGFKL-YDQNLALTNGAPSNMS 234 + EAA VDGA+ Q ++ I +P + P I + L + N F ++ L N PS Sbjct 199 TLYEAAMVDGASRWQQIWHITLPAIRPLIVILLILNIGNIFNAGFELFYLLPN--PSGYD 256 Query 235 EGLAMNITRTFYGRMGWEG--------VGQAKAVLFFILVAIVALIQNKLTTS 279 + T+ R G G ++V+ FIL+ + I + Sbjct 257 VT---EVLDTYVYRGGLVTGDYSYSTAAGLFQSVVGFILLFLANRIAKRFDNE 306 >CDD:224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length=540 Score = 70.0 bits (172), Expect = 2e-14, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 84/211 (40%), Gaps = 7/211 (3%) Query 11 KWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVGLKNYKRAFADKEFLHAL 70 L + + V F+ L+ F +D L Sbjct 1 MSSPRSPLGSILLLLALLVALFVALPLLAV--FAAALSLGGGAFDALAAVLSDPYLWRVL 58 Query 71 GFSTALTIITTIVINVVAFAIAYMLTK-AIKGSNIFRSVFFMPNLIGGIILGYIWMLLL- 128 + L ++ T++ V+ +A++L++ G + R + +P +I ++ W+ L Sbjct 59 ANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFG 118 Query 129 -NGILAHWGRALTYSAT--YGFWGLVILVCWQQIGYMMIIYIAGMQSLPTDVLEAASVDG 185 +G LA L + + YG G+++ + + ++ +A ++++P + EAA G Sbjct 119 PSGPLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLG 178 Query 186 ANGTQTMFKIIIPLMMPSITVCSFLCVTNGF 216 A+ Q K+ +PL+ P+I + L Sbjct 179 ASRWQVFRKVTLPLLRPAIAAGALLVFMLCL 209 Score = 55.0 bits (133), Expect = 2e-09, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 23/198 (12%) Query 8 AIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVGLKNYKRAFADKEFL 67 L ++ V+P + + A +F Sbjct 290 LGAALIVLLLF-LILLPLLAVVLPSFVLNWGR----------------PLSLVLASPQFW 332 Query 68 HALGFSTALTIITTIVINVVAFAIAYMLTKAI-KGSNIFRSVFFMPNLIGGIILGYIWML 126 AL S L + ++ V+A +AY + + + S + + +P + G++L +L Sbjct 333 QALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLL 392 Query 127 LLNGILAHWGRALTYSATYGFWGLVILVCWQQIGYMMIIYIAGMQSLPTDVLEAASVDGA 186 L Y Y LV+ + + + + A ++ + + EAA GA Sbjct 393 LFRAPDGL-----LYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGA 447 Query 187 NGTQTMFKIIIPLMMPSI 204 +G + +I +PL+ P + Sbjct 448 SGLRRFRRITLPLLRPGL 465 >CDD:223472 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]. Length=281 Score = 59.5 bits (145), Expect = 3e-11, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 27/284 (10%) Query 4 MAGKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVG-------LKN 56 M ++ RK + + F+ P + SF + L+N Sbjct 1 MMKRSRRKIRKILLYLLLILVALLFLFPLYWMILTSFKPSAEIFSGPPPSLWPSSFTLEN 60 Query 57 YKRAFADK-EFLHALGFSTALTIITTIVINVVAFAIAYMLTK-AIKGSNIFRSVFFMPNL 114 Y+ F+ FL S + + +T++ +++ AY L + KG + + + + Sbjct 61 YRTVFSGGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLM 120 Query 115 IGGIIL---GYIWMLLLNGILAHWGRALTYSATYGFWGLVILVCWQQIGYMMIIYIAGMQ 171 + +L Y+ M L + +WG L Y A + + +++ + + Sbjct 121 LPAQVLLIPLYLLMRKLGLLNTYWGLILPYLAFGLPFAI----------FLLRQF---FR 167 Query 172 SLPTDVLEAASVDGANGTQTMFKIIIPLMMPSITVCSFLCVTNGFKLYDQNLALTNGAPS 231 ++P ++ EAA +DGA+ Q FKI++PL P + + + + L L + P+ Sbjct 168 TIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSS-PN 226 Query 232 NMSEGLAMNITRTFYGRMGWEGVGQAKAVLFFILVAIVALIQNK 275 ++ + +N G W G+ A AVL + V IV L + Sbjct 227 LLTLPVGLNSFGGSEGGTDW-GLIMAAAVLAILPVLIVFLFFQR 269 >CDD:226354 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length=282 Score = 59.2 bits (144), Expect = 4e-11, Method: Composition-based stats. Identities = 53/216 (25%), Positives = 83/216 (38%), Gaps = 25/216 (12%) Query 1 MISMAGKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFV----GLKN 56 M+S K + + L A II F P + V SF + T + + L N Sbjct 2 MMSQKKKRKLRLLLTYLLLIILAIIIIF--PLLWVVLTSFRPGNSATGSSLIPKNITLDN 59 Query 57 YKRAFADKEFLHALGF------STALTIITTIVINVVAFAIAYMLTKAIKGSNIFRSVFF 110 YK F F + L + IT ++ + A+A + K K F + Sbjct 60 YKLLFTGPPFPYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQ 119 Query 111 MPNLIGGIILGYIWMLLLNGILAHWGRALTYSATYGFWGLVILVCWQQIGYMMIIYIAGM 170 M + +I Y+ + LL + WG L Y G + + W GY Sbjct 120 MFPGVAALIALYVLLKLLGLLNTLWGLILAYLG-----GAIPMNTWLIKGYF-------- 166 Query 171 QSLPTDVLEAASVDGANGTQTMFKIIIPLMMPSITV 206 ++P + EAA +DGA Q +I++PL P + V Sbjct 167 DTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAV 202 >CDD:226616 COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length=282 Score = 52.1 bits (125), Expect = 9e-09, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 17/231 (7%) Query 10 RKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVGLKNYKRAFADKEFLHA 69 K A + F F I F+I + +L F A L N F L A Sbjct 3 EKPLAWLGVLPFFIFFIMFLIAPTL--WLVLGAFQV--PAGEFTLANIADLF-QPFILQA 57 Query 70 LGFSTALTIITTIVINVVAFAIAYMLTKAIKGSNIFRSVFFMPNLI---GGIILGYIWML 126 S ++ ++++ ++ F +A+ L S I + + G+ L + ++ Sbjct 58 YWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIA 117 Query 127 LL------NGILAHWGRALTYS---ATYGFWGLVILVCWQQIGYMMIIYIAGMQSLPTDV 177 L L G YS F+GL I + QI M++I L + Sbjct 118 TLGRNGLVTVFLKTLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEW 177 Query 178 LEAASVDGANGTQTMFKIIIPLMMPSITVCSFLCVTNGFKLYDQNLALTNG 228 EAA++ GA G Q + +P++ PS+ L N F Y ALT Sbjct 178 REAAAILGATGWQYWRMVALPILWPSLLGTFVLLFANAFGAYATAYALTGS 228 >CDD:223629 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]. Length=274 Score = 50.3 bits (121), Expect = 4e-08, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 78/204 (38%), Gaps = 19/204 (9%) Query 6 GKAIRKWWALFALPTFAAFIIGFVIPFIMGVYLSFCKFTTVTDAEFVGLKNYKRAFADKE 65 L F I+ ++P V S +G + A Sbjct 7 RVIPGFGLLLGLTLLFLLLIL--LLPLSALVTKSS----------SLGWAGFWSALTSPR 54 Query 66 FLHALGFSTALTIITTIVINVVAFAIAYMLT-KAIKGSNIFRSV----FFMPNLIGGIIL 120 L AL + T++ V +A++L G + ++ F +P + GI L Sbjct 55 VLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIAL 114 Query 121 GYIWMLLLNGILAHWGRALTYSATYGFWGLVILVCWQQIGYMMIIYIAGMQSLPTDVLEA 180 ++ NG+L L + G+++ + + + +++ ++ + + EA Sbjct 115 LLLFGP--NGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEA 172 Query 181 ASVDGANGTQTMFKIIIPLMMPSI 204 A GA+ QT ++I+PL++P++ Sbjct 173 ARSLGASPLQTFRRVILPLLLPAL 196 Lambda K H a alpha 0.330 0.141 0.437 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 219843549 Query= BifidoAdolescentis.s6#1#42067#ORF8 L-arabinose transport system permease protein AraQ Length=280 Score E Sequences producing significant alignments: (Bits) Value CDD:223472 COG0395, UgpE, ABC-type sugar transport system, permea... 193 8e-62 CDD:226354 COG3833, MalG, ABC-type maltose transport systems, per... 127 4e-36 CDD:224096 COG1175, UgpA, ABC-type sugar transport systems, perme... 78.4 9e-18 CDD:224098 COG1177, PotC, ABC-type spermidine/putrescine transpor... 73.0 6e-16 CDD:224099 COG1178, ThiP, ABC-type Fe3+ transport system, permeas... 55.0 2e-09 >CDD:223472 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]. Length=281 Score = 193 bits (494), Expect = 8e-62, Method: Composition-based stats. Identities = 100/271 (37%), Positives = 150/271 (55%), Gaps = 3/271 (1%) Query 11 ALWSVLFAVVSLAWIFPIVLVIINSFKQKAYISRNAFSLPTGKAFVGLENYTRGLETT-N 69 L +L +V+L ++FP+ +I+ SFK A I +F LENY Sbjct 12 ILLYLLLILVALLFLFPLYWMILTSFKPSAEIFSGPPPSLWPSSFT-LENYRTVFSGGPG 70 Query 70 FFASFGWTLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTL 129 F F +L++ VGS L L+ +S+ A+ + R KLL+ L L +++P Q+++ L Sbjct 71 FLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPL 130 Query 130 SKLADMLKL-NTPWGLCFVYLGFGAGLAVFIFTGVVKGIPESLEESAMIDGASVPRIFFQ 188 L L L NT WGL YL FG A+F+ + IP+ LEE+A IDGAS +IFF+ Sbjct 131 YLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFK 190 Query 189 IVVPIMKPSIVSVAILQAMWIWNDYLLPYLTLDLSKYKTISVAVQYLKGGYGSVDMGAMM 248 IV+P+ KP + +VAI + WN++L P + L T+ V + G G D G +M Sbjct 191 IVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLTLPVGLNSFGGSEGGTDWGLIM 250 Query 249 ACLVMAIIPIIIFYLICQKYIVKGVMAGAVK 279 A V+AI+P++I +L Q+Y V+G+ AGAVK Sbjct 251 AAAVLAILPVLIVFLFFQRYFVRGLTAGAVK 281 >CDD:226354 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length=282 Score = 127 bits (322), Expect = 4e-36, Method: Composition-based stats. Identities = 77/268 (29%), Positives = 136/268 (51%), Gaps = 7/268 (3%) Query 16 LFAVVSLAWIFPIVLVIINSFKQKAYISRNAFSLPTGKAFVGLENYTRGL--ETTNFFAS 73 L ++++ IFP++ V++ SF+ + ++ +P + L+NY + Sbjct 19 LLIILAIIIIFPLLWVVLTSFRPGNSATGSSL-IPK---NITLDNYKLLFTGPPFPYLLW 74 Query 74 FGWTLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKLA 133 +L++ + + A+ + ++ A+ R K L FL + P + L L Sbjct 75 LWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLL 134 Query 134 DMLK-LNTPWGLCFVYLGFGAGLAVFIFTGVVKGIPESLEESAMIDGASVPRIFFQIVVP 192 +L LNT WGL YLG + ++ G IP+SL+E+A IDGA+ +IF +I++P Sbjct 135 KLLGLLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLP 194 Query 193 IMKPSIVSVAILQAMWIWNDYLLPYLTLDLSKYKTISVAVQYLKGGYGSVDMGAMMACLV 252 + KP + VA+L + + D++L L L + T++V +Q G + + G A V Sbjct 195 LSKPILAVVALLAFIGPFGDFILASLLLRDPENYTLAVGLQSFLNGPQNTNWGLFAAGAV 254 Query 253 MAIIPIIIFYLICQKYIVKGVMAGAVKG 280 + +PI I +L+ QKY+V G+ AG VKG Sbjct 255 LIALPITILFLVLQKYLVSGLTAGGVKG 282 >CDD:224096 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length=295 Score = 78.4 bits (194), Expect = 9e-18, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 30/224 (13%) Query 17 FAVVSLAWIFPIVLVIINSFKQKAYISRNAFSLPTGKAFVGLENYTRGLETTNFFASFGW 76 ++ + +++P++L + SF N L FVGL NY R F+ + Sbjct 20 LLLLLVFFLYPLILTLYLSF-------TNYDLLGPPSTFVGLANYERLFSDPTFWNALKN 72 Query 77 TLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVP--------------- 121 TL+ TV SV L LV + A ++ TLF + Sbjct 73 TLVFTVISVPLQLVLGLLLAL-LLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPS 131 Query 122 ---FQMVMFTLSKLADMLKLNTP----WGLCFVYLGFGAGLAVFIFTGVVKGIPESLEES 174 ++ L + D+ L+ P + + V + G G + +F ++ IP+ L E+ Sbjct 132 FGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEA 191 Query 175 AMIDGASVPRIFFQIVVPIMKPSIVSVAILQAMWIWNDYLLPYL 218 A IDGAS + F +I +P+++P I V IL+ ++ + + L YL Sbjct 192 ARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYL 235 >CDD:224098 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length=267 Score = 73.0 bits (180), Expect = 6e-16, Method: Composition-based stats. Identities = 49/205 (24%), Positives = 87/205 (42%), Gaps = 8/205 (4%) Query 1 MNSGEKVKHGALWSVLFAVVSLAWIFPIVLVIINSFKQKAYISRNAFSLPTGKAFVGLEN 60 M ++ + A+V L P++++++ SF SR P G L+ Sbjct 1 MMKRRRIWARIFLKLYLALVLLFLYLPLLVLVLYSFNS----SRLGLVFPPG---FSLKW 53 Query 61 YTRGLETTNFFASFGWTLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIV 120 Y ++ +LLI + S L + ++ A + R LL L L ++V Sbjct 54 YGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVV 113 Query 121 PFQMVMFTLSKLADMLKL-NTPWGLCFVYLGFGAGLAVFIFTGVVKGIPESLEESAMIDG 179 P + L L L L W + ++ F V + + ++G SLEE+A G Sbjct 114 PDIVTGIALLLLFAALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLG 173 Query 180 ASVPRIFFQIVVPIMKPSIVSVAIL 204 AS + F ++ +P++ P I+S A+L Sbjct 174 ASPWQTFRRVTLPLILPGILSGALL 198 >CDD:224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length=540 Score = 55.0 bits (133), Expect = 2e-09, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 101/267 (38%), Gaps = 32/267 (12%) Query 3 SGEKVKHGALWSVLFAVVSLAWIFPIVLVIINSFKQKAYISRNAFSLPTGKAFVGLENYT 62 S + G++ +L +V+L P++ V + ++ + + Sbjct 2 SSPRSPLGSILLLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRV---- 57 Query 63 RGLETTNFFASFGWTLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPF 122 TL++ V L +V AW + R + +LL L +++P Sbjct 58 -----------LANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPP 106 Query 123 QMVMFTLSKLAD---------------MLKLNTPWGLCFVYLGFGAGLAVFIFTGVVKGI 167 +V L + G+ + F LA + ++ I Sbjct 107 FVVALAWISLFGPSGPLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETI 166 Query 168 PESLEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILQAMWIWNDYLLPYLTLDLSKYKT 227 P SLEE+A GAS ++F ++ +P+++P+I + A+L M D+ P L L Y T Sbjct 167 PPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTP-LILGGG-YTT 224 Query 228 ISVAVQYLKGGYGSVDMGAMMACLVMA 254 + A+ + A++A L++ Sbjct 225 LETAIYQAIMSSFDLARAALLALLLLL 251 Lambda K H a alpha 0.329 0.142 0.447 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 215468553 Query= BifidoAdolescentis.s6#1#42067#ORF9 hypothetical protein Length=200 ***** No hits found ***** Lambda K H a alpha 0.329 0.141 0.455 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 133004160 Query= BifidoAdolescentis.s6#1#42067#ORF10 Oligo-1,6-glucosidase Length=577 Score E Sequences producing significant alignments: (Bits) Value CDD:223443 COG0366, AmyA, Glycosidases [Carbohydrate transport an... 280 1e-88 CDD:225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbo... 56.3 5e-09 CDD:223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carb... 55.0 1e-08 >CDD:223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]. Length=505 Score = 280 bits (717), Expect = 1e-88, Method: Composition-based stats. Identities = 180/570 (32%), Positives = 257/570 (45%), Gaps = 81/570 (14%) Query 9 AVVYQIYPRSFKDVNG------DGLGDIAGVTEKMDYLKNLGIDAIWLSPFYPSDLADGG 62 AV+YQIYP F D NG DG GD+ G+TEK+DYLK LG+DAIWLSP + S AD G Sbjct 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHG 60 Query 63 YDVIDYRNVDPRLGTMADFDAMAAAAHEAGIKVIVDIVPNHTSNKHKMFIEALAAGRGSA 122 YDV DY VDP GT DF + AH+ GIKVI+D+V NHTS++H F EA ++ Sbjct 61 YDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPK 120 Query 123 ARDRYIFREGRGEHGELPPNDWQSLFGGPAWQQVDDGQWYLHMFAKEQPDLNWKNPDVHE 182 D YI+R+ + PPN+W S+FGG AW + G++YLH+F+ EQPDLNW+NP+V E Sbjct 121 RSDYYIWRDPDPD--GTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVRE 178 Query 183 EFKKTLRFWSDHGTDGFRIDVAHGLAKDLDSVPLADMDPAAVQHVLPADGAFSP--LWDR 240 E ++FW D G DGFR+D A ++KD P + ++ + +P L Sbjct 179 ELLDVVKFWLDKGVDGFRLDAAKHISKDFGLPPSEENLT-FLEEIHEYLREENPDVLIYG 237 Query 241 PEVHDIYREWRQVFNEYNPPRFAVGEAWVKAESQHLYASTDELGQVFNFEFAEANWF--- 297 + D+ E E + + + EL +F+F ++ Sbjct 238 EAITDVG-EAPGAVKED--------------FADNTSFTNPELSMLFDFSHVGLDFEALA 282 Query 298 ---ADEFRTAIADGLRAAEETHGSTTTWVMNNHDVPRSPSRFGLPQVKDAPYHQLAHDWL 354 A+E + +AD A G ++NHD PR SRFG Sbjct 283 PLDAEELKEILADWPLAVNLNDGW-NNLFLSNHDQPRLLSRFG----------------- 324 Query 355 LRDGETYRENRELGTRRARAAALMELGLPGSAYVYQGEELGLFEVANIPWDRLEDPTPFN 414 D R+ A+ A + LPG+ ++Y G+ELGL + P Sbjct 325 --DDVGGRD------ASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPP----IKYYDDV 372 Query 415 TRRNFTDKGRDGCRAPMPWKAADCGEPASWSPDFITGGTFGFGPEQGDSADAHLPQPAWF 474 + RDGCR PMPW G G + P Sbjct 373 ELDSIILLSRDGCRTPMPWDENGL----------------NAGFTGGKPWLSVNPNDLLG 416 Query 475 KDFAADVEADDNGSMLHLYRKLLQLRQTV--LTATGDTSADLLDMGDTVVAYSRPATEGR 532 + A + + S+ + YR+L+ LR+ L A G+ L D +++A+ R + G Sbjct 417 INVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLR-ESGGE 475 Query 533 RFLSVTNFGDEPIALPDDAVAIANSVPLTD 562 L V N +E + VP+ Sbjct 476 TLLVVNNLSEEEQEVELPGSEGLGRVPVLL 505 >CDD:225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]. Length=889 Score = 56.3 bits (136), Expect = 5e-09, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query 29 DIAGVTEKMDYLKNLGIDAIWLSPFYPSDLADG-GYDVIDYRNVDPRLGTMADFDAMAAA 87 A +DYL +LGI ++LSP + + GYDV+D ++P LG + + AA Sbjct 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAA 76 Query 88 AHEAGIKVIVDIVPNH 103 G+ +IVDIVPNH Sbjct 77 LKSRGLGLIVDIVPNH 92 >CDD:223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]. Length=628 Score = 55.0 bits (133), Expect = 1e-08, Method: Composition-based stats. Identities = 102/445 (23%), Positives = 144/445 (32%), Gaps = 98/445 (22%) Query 2 RDDWWKQAVVYQIYPRSFKDVNGDGLGDIAGVTEKMDYLKNLGIDAIWLSPF--YPSDLA 59 R +W+ V+Y+++ SF LG E + YLK LGI I L P +P D Sbjct 138 RGRFWEPIVIYELHVGSFTP--DRFLGYFELAIELLPYLKELGITHIELMPVAEHPGD-R 194 Query 60 DGGYDVIDYRNVDPRLGTMADFDAMAAAAHEAGIKVIVDIVPNHTSNKHKMFIEALAAGR 119 GY Y R GT DF A+ AAH+AGI VI+D VPNH G Sbjct 195 SWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFP----------PDGN 244 Query 120 GSAARDRYIFRE----GRGEHGELPPNDWQSLFGGPAWQQVDDGQWYLHMFAKEQPDLNW 175 A D E RGEH DW + + G+ Sbjct 245 YLARFDGTFLYEHEDPRRGEH-----TDWGTAI-------FNYGR--------------- 277 Query 176 KNPDVHEEFKKTLRFWSDH-GTDGFRIDVAHGLAKDLDSVPLADMDPAAVQHVLPADGAF 234 +V +W + DG R+D + L D A + V G Sbjct 278 --NEVRNFLLANALYWLEEYHIDGLRVDAVASM---LYL----DYSRAEGEWVPNEYGG- 327 Query 235 SPLWDRPEVHDIYREWRQVFNEYNPPRFAVGEAWVKAESQHLYASTDELGQVFNFEFAEA 294 + E + R + +E P + E + H+ G F +++ Sbjct 328 ---RENLEAAEFLRNLNSLIHEEEPGAMTIAEEST--DDPHVTLPVAIGGLGFGYKWNMG 382 Query 295 NWFADEFRTAIADGLRAAEETHGSTTTWVMNNHDVPRSPSRFGLPQVKDAPYHQLAHDWL 354 W D D + + HG T ++ LP +HD Sbjct 383 -WMHDTLFYFGKDPVY-RKYHHGELTFGLLYAF-----SENVVLPL---------SHD-- 424 Query 355 LRDGETYRENRELGTR--------RA--RAAALMELGLPGSAYVYQGEELGLF----EVA 400 E R LG R A RA A PG ++ GEE G + Sbjct 425 ----EVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFS 480 Query 401 NIPWDRLEDPTPFNTRRNFTDKGRD 425 ++ W L+ + F RD Sbjct 481 SLDWLLLDQAVREGRHKEFRRLVRD 505 Lambda K H a alpha 0.319 0.137 0.438 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 516043706 Query= BifidoAdolescentis.s6#1#42067#ORF11 4-alpha-glucanotransferase Length=722 Score E Sequences producing significant alignments: (Bits) Value CDD:224555 COG1640, MalQ, 4-alpha-glucanotransferase [Carbohydrat... 419 2e-140 >CDD:224555 COG1640, MalQ, 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]. Length=520 Score = 419 bits (1079), Expect = 2e-140, Method: Composition-based stats. Identities = 180/545 (33%), Positives = 258/545 (47%), Gaps = 46/545 (8%) Query 170 PAVAEKQ--RWGWMAQMYSIRSAESWGVGDYGDLKLLLSDAATKSHADFMLINPIHATAP 227 P + +WG Q+YS+R SWG+GD+GDL L D + D+ I P+HAT P Sbjct 4 PDKLLGRSMKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGP 63 Query 228 VPPLEPSPYLPESRRFLNVTYIRPQDIAEYAELNEADQAEVARLHAEVSPANDSIEPLDI 287 E SPY P SRR LN YI + + E+ + + P +++ +D Sbjct 64 AYE-EDSPYSPSSRRALNPLYIDVEALPEFQDFLLDKDLQAL-------PQLRALDWVDY 115 Query 288 NSAWWHKRQALQLVYNVPRSV-ERQAAFDAFKEAAGPDLRAFAAW-SVAFQVWGAPWEGT 345 KR+AL+ + + ER+ F AF + G L +A + ++ A W+ Sbjct 116 AKVTALKRKALEKAFANFKKRKEREKDFAAFCQEEGYWLDDYALFMALKEHFHAAGWQ-V 174 Query 346 WFKD-TNRDSPEVVELMREHADMVDFECWLQWIADEQVTAAQNAARDSGMALGLMQDMAV 404 W RD V + HA+ VDF +LQW+ Q+ A + A D M +G++ D+ V Sbjct 175 WPDSYRRRDLSAVSAFIELHAEEVDFHRFLQWLFFRQLAALKRYAND--MGIGIIGDLPV 232 Query 405 GVHSLGADVWWNPERFAVGSVTVGCPPDFYNQQGQDWGQPPFNPNYLAKTGYGVYREMVH 464 GV ADVW NPE F + + G PPD +N QGQDWG PP+NP L K GY + E + Sbjct 233 GVAQDSADVWANPEYFCLD-ESAGAPPDVFNAQGQDWGLPPYNPEALKKDGYDWWIERLR 291 Query 465 NMFSHAGAVRIDHILGLFRLWWIPQGEGARGGAYVTYDYEAMIAILTIEASRVNGLVVGE 524 G +RIDH GLFRLW IP GE G Y Y ++ IL +EA R N LV+GE Sbjct 292 ANLKLYGILRIDHFRGLFRLWEIPYGEDTAQGGYWRYPPGKLLFILALEALRANMLVIGE 351 Query 525 DLGTVPDYVRTVLGEHGLLGCMVEWFARVDDSPNAGDPYADPSTYRKYALASVTTHDLPP 584 DLGTVP VR +L G+ G + F ++ P+ P+ P+ Y ++A+ +THDLP Sbjct 352 DLGTVPAEVRDLLAHLGIPGMKILRFEADNEDPS---PFLPPNYYPPNSVATTSTHDLPT 408 Query 585 TAGYLQFEHVKLREQL-HLLSGPVEEFQASATAERDAMMDRLVESGLITPEVAGDVEGHI 643 G+ + +LR +L LL ++ A+ + R Sbjct 409 LRGWWEELDEELRRRLGLLLPEAYDDRLAAIAELLVWLHLRS------------------ 450 Query 644 QEIVEAMHKMLLKSPSVLLQAALVDGVGETRTQNQPGTSSEYSNWRVPLAGPDLKVVHTD 703 A+ + L S S LL L D +G N PGT Y NWR L + + Sbjct 451 -----ALMRYLSVSDSALLSLQLEDELGSEERMNIPGTI--YPNWRWRLHCSLETLFLNE 503 Query 704 EVFDL 708 ++ +L Sbjct 504 DLNEL 508 Lambda K H a alpha 0.317 0.133 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 665556715 Query= BifidoAdolescentis.s6#1#42067#ORF12 Pullulanase Length=597 Score E Sequences producing significant alignments: (Bits) Value CDD:224440 COG1523, PulA, Type II secretory pathway, pullulanase ... 358 4e-116 CDD:223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carb... 121 9e-30 CDD:223443 COG0366, AmyA, Glycosidases [Carbohydrate transport an... 70.8 1e-13 >CDD:224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]. Length=697 Score = 358 bits (920), Expect = 4e-116, Method: Composition-based stats. Identities = 173/533 (32%), Positives = 256/533 (48%), Gaps = 83/533 (16%) Query 30 RRSMVVDFSRTNPDGWYRDHMPDVPLAQTVVWETHVGDFSN-DPAGGFPESHRGKYLAFT 88 +S+V+D W D P +P TV++E HV DF+ P G PE RG YL Sbjct 148 PKSVVID----PLFDWENDKPPRIPWEDTVIYEAHVRDFTQLHP--GVPEELRGTYLGLA 201 Query 89 DDGTSLEGHPDFPTGLAYLKKLGVTAVQLMPIYDF--GSVDETTCDRYNWGYDPINYNVP 146 + + YLK LGVTAV+L+P++DF + + NWGYDP+N+ P Sbjct 202 EPVI-----------IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAP 250 Query 147 EGSYSTNPFDGTTRIREVKQMVQALHSAGIKVIMDVVYNHMFSTDNW-----FERTVPKY 201 EG Y++NP + TRI+E K MV+ALH AGI+VI+DVV+NH + F P Y Sbjct 251 EGRYASNP-EPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNY 309 Query 202 FLRRKPNGALANGSGCGCDMATERKMFRRFIVESVTFWAREYHMDGFRFDLMGLIDVDTM 261 + R P+G +NG+GCG + TE M R+ IV+S+ +W EYH+DGFRFDL G++ +TM Sbjct 310 YYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM 369 Query 262 N-AVRAALNEIPGRGRDILMYGEPWSAGASAPLPADTLLAGKQGLAQLDDRIGHFCDTTR 320 + A + + GE + L A+ G G ++G+F D+ R Sbjct 370 LFDINAN----------LFLAGEGDPVLSGVKLIAEPWDIGPGG-----YQVGNFPDSPR 414 Query 321 DTIKGHVFYSDRPGYVNGGMHA-NAVAVR--EAVDAWRHSDRPEGVAGQVIQYVSAHDDL 377 F D + G A R + D ++ + R Q I YV+AHD Sbjct 415 WAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRR---PSQSINYVTAHDGF 471 Query 378 TLWDKLCASLAASSLGSAVAEGDEENTVDVPKTLHDADFSEQGLDAVGPEMAQALHDVLG 437 TLWD + + + E + EN D H+ ++S G E + Sbjct 472 TLWDLVSYNHKHN-------EANGENNRD----GHNDNYS----WNHGVEGPTGDPFIHA 516 Query 438 A------NRLSAGIVLTSAGIPFMLSGEEFARTKYGNSDSYDSTKELNWLDWNRAWHMRD 491 N L+ +L S G P +L+G+EF RT+YGN+++Y E+NWLDW+ + D Sbjct 517 GRERQRTNLLA--TLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEAN-ND 573 Query 492 LIGFYAKLIALRKS-----DARWFDGNRKIVDTEGDELVFRVGDYLVAVNPSD 539 L+ F LIALRK+ +F+G R G + + + + + D Sbjct 574 LVEFTKGLIALRKAHPAFRRRSFFEGKR------GVKDITWLNWNGIPLTQDD 620 >CDD:223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]. Length=628 Score = 121 bits (305), Expect = 9e-30, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 102/262 (39%), Gaps = 59/262 (23%) Query 3 YDFLIERDCGSVDRVADPWAR--GAGVNGRRSMVVDFSR--TNPDGWYRDHMPDVPLAQT 58 Y + + G + ADP+AR G + S VVD + W R Sbjct 88 YKYELIDPSGQLRLKADPYARRQEVGPHTA-SQVVDLPDYEWQDERWDRAW-RGRFWEPI 145 Query 59 VVWETHVGDFSNDPAGGFPESHRGKYLAFTDDGTSLEGHPDFPTGLAYLKKLGVTAVQLM 118 V++E HVG F+ P+ G + + L YLK+LG+T ++LM Sbjct 146 VIYELHVGSFT-------PDRFLGYF-ELAIEL------------LPYLKELGITHIELM 185 Query 119 PIYDFGSVDETTCDRYNWGYDPINYNVPEGSYSTNPFDGTTRIREVKQMVQALHSAGIKV 178 P+ + +WGY Y P Y GT + K +V A H AGI V Sbjct 186 PVAEHPG-------DRSWGYQGTGYYAPTSRY------GTPE--DFKALVDAAHQAGIGV 230 Query 179 IMDVVYNHMFSTD----NWFERTV-PKYFLRRK----PNGALANGSGCGCDMATERKMFR 229 I+D V NH F D F+ T ++ R+ G G R R Sbjct 231 ILDWVPNH-FPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYG--------RNEVR 281 Query 230 RFIVESVTFWAREYHMDGFRFD 251 F++ + +W EYH+DG R D Sbjct 282 NFLLANALYWLEEYHIDGLRVD 303 >CDD:223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]. Length=505 Score = 70.8 bits (173), Expect = 1e-13, Method: Composition-based stats. Identities = 103/519 (20%), Positives = 156/519 (30%), Gaps = 132/519 (25%) Query 96 GHPDFPTG---LAYLKKLGVTAVQLMPIYDFGSVDETTCDRYNWGYDPINYNVPEGSYST 152 G D L YLK+LGV A+ L PI++ + + GYD +Y Sbjct 24 GGGDLKGITEKLDYLKELGVDAIWLSPIFE-------SPQADH-GYDVSDY------TKV 69 Query 153 NPFDGTTRIREVKQMVQALHSAGIKVIMDVVYNHMFSTDNWFERTV--------PKYFLR 204 +P GT + K++V+ H GIKVI+D+V+NH WF+ Y++ Sbjct 70 DPHFGT--EEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIW 127 Query 205 RKPN-------------GALANGSGC--------GC----DMATERKMFRRFIVESVTFW 239 R P+ G A G D+ E R +++ V FW Sbjct 128 RDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFW 187 Query 240 AREYHMDGFRFDLMGLIDVDT---------------MNAVRAALNEIPGRGRDILMYGEP 284 +DGFR D I D +R ++ G I GE Sbjct 188 LD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEA 246 Query 285 WSAGASAPLPADTLLAGKQGLAQLDDRIGHFCDTTRDTIKGHVFYSDRPGYVNGGMHANA 344 A + + G F + P +A Sbjct 247 PGA------------VKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPL--------DA 286 Query 345 VAVREAVDAWRHSDRPEGVA---GQVIQYVSAHD---------DLTLWDKLCASLAASSL 392 ++E + W P V G ++S HD D A L A+ L Sbjct 287 EELKEILADW-----PLAVNLNDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALL 341 Query 393 GS-----AVAEGDEENTVDVPKTLHDADFSEQGLDAVGPEMAQALHDVLGANRLSAGIVL 447 + GDE T + D + D G + Sbjct 342 FLLPGTPFIYYGDELGL-----TNFKDPPIKYYDDVELDSIILLSRD--GC---RTPMPW 391 Query 448 TSAGIPFMLSGEEFARTKYGNSDSYDSTKELNWLDWNRAWHMRDLIGFYAKLIALRKSDA 507 G+ +G + +D E D L FY +LIALRK + Sbjct 392 DENGLNAGFTGGK-PWLSVNPNDLLGINVEAQLADELPE----SLFNFYRRLIALRKQHS 446 Query 508 RWF-DGNRKIVDTEGDELVFRVGDY------LVAVNPSD 539 +G ++ + D + LV N S+ Sbjct 447 ALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 Lambda K H a alpha 0.320 0.137 0.436 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 537236466 Query= BifidoAdolescentis.s6#1#42067#ORF13 Phosphoglycolate phosphatase Length=260 Score E Sequences producing significant alignments: (Bits) Value CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily... 101 5e-27 CDD:223620 COG0546, Gph, Predicted phosphatases [General function... 74.4 7e-17 CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomut... 56.7 1e-10 >CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]. Length=229 Score = 101 bits (254), Expect = 5e-27, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 25/250 (10%) Query 8 PRYEVVFFDLYGTLIDIRTDEQSEAAWQALYDCVHELGAQYGSLDEMRERFDQLEAREMV 67 + + FDL GTL+D + E + E E L+ E + Sbjct 2 MMIKAILFDLDGTLLDFDSAEFRAV----------LAEFAEIGVPETLEELALLKLIEKL 51 Query 68 HQANRAIVRDGWGEFDILPVYRSLLMNRDDEAERRLALPQAAEKAAWAFRQASTSMIRLY 127 G + L L + A ++ Y Sbjct 52 EARFLRGEYTG----EYGLTLERL------LELLERLLGDEDAELVEELLAALAKLLPDY 101 Query 128 PGALDMIERLQDAGVVVVLLSNAQACYTRPELEMTGLASVLDDVIISSEEKMRKPSRELY 187 P AL+ ++ L + +L+N + +L GL D V IS + + KP E++ Sbjct 102 PEALEALKELG-KKYKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF 160 Query 188 MLALDREFVTAKHALMVGNDERNDIIGANAAGLDAAYFRTEISPANDPAASEHAVCSFTG 247 AL++ V + AL VG+ NDI+GA A G+ + P D + + Sbjct 161 EYALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPD----YEI 216 Query 248 ADYDGLLKFV 257 + LL + Sbjct 217 SSLAELLDLL 226 >CDD:223620 COG0546, Gph, Predicted phosphatases [General function prediction only]. Length=220 Score = 74.4 bits (183), Expect = 7e-17, Method: Composition-based stats. Identities = 53/235 (23%), Positives = 90/235 (38%), Gaps = 31/235 (13%) Query 9 RYEVVFFDLYGTLIDIRTDEQSEAAWQALYDCVHELGAQYGSLDEMRERFDQLEAREMVH 68 + + FDL GTL+D + E A+ A A+ G E Q ++ Sbjct 3 MIKAILFDLDGTLVD--SAEDILRAFNAA-------LAELGLPPLDEEEIRQ-----LIG 48 Query 69 QANRAIVRDGWGEFDILPVYRSLLMNRDDEAERRLALPQAAEKAAWAFRQASTSMIRLYP 128 ++ GE D + R++ L + RL+P Sbjct 49 LGLDELIERLLGEADEEAAAELVERLREEFLTAYAELLE----------------SRLFP 92 Query 129 GALDMIERLQDAGVVVVLLSNAQACYTRPELEMTGLASVLDDVIISSEEKMRKPSRELYM 188 G +++ L+ AG + +++N L+ GLA D ++ + KP E + Sbjct 93 GVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLL 152 Query 189 LALDREFVTAKHALMVGNDERNDIIGANAAGLDAAYFRTEISPANDPAASEHAVC 243 L L++ + + ALMVG D NDI+ A AAG+ A + + A + V Sbjct 153 LLLEKLGLDPEEALMVG-DSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVV 206 >CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]. Length=221 Score = 56.7 bits (137), Expect = 1e-10, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (37%), Gaps = 39/242 (16%) Query 9 RYEVVFFDLYGTLIDIRTDEQSEAAWQALYDCVHELGAQYG---SLDEMRERFDQLEARE 65 + V FD+ GTL+D ++ AW E +YG S +E+RE AR Sbjct 1 MIKAVIFDMDGTLVD--SEPLHARAWL-------EALKEYGIEISDEEIRELHGGGIARI 51 Query 66 MVHQANRAIVRDGWGEFDILPVYRSLLMNRDDEAERRLALPQAAEKAAWAFRQASTSMIR 125 + + + L +D A+ E A ++ Sbjct 52 I-----DLLRK---------------LAAGEDPADLAELERLLYEAEALELEG-----LK 86 Query 126 LYPGALDMIERLQDAGVVVVLLSNAQACYTRPELEMTGLASVLDDVIISSEEKMRKPSRE 185 PG ++++E+L+ G+ + + S++ L GL D ++ + + KP+ + Sbjct 87 PIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPD 146 Query 186 LYMLALDREFVTAKHALMVGNDERNDIIGANAAGLDAAYFRTEISPANDPAASEH-AVCS 244 +Y+LA +R V + ++V D I A AAG+ + H A Sbjct 147 IYLLAAERLGVDPEECVVVE-DSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTV 205 Query 245 FT 246 Sbjct 206 LL 207 Lambda K H a alpha 0.320 0.134 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 193593573 Query= BifidoAdolescentis.s6#1#42067#ORF14 hypothetical protein Length=268 ***** No hits found ***** Lambda K H a alpha 0.329 0.140 0.431 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 202343565 Query= BifidoAdolescentis.s6#1#42067#ORF15 Catabolite control protein A Length=342 Score E Sequences producing significant alignments: (Bits) Value CDD:224525 COG1609, PurR, Transcriptional regulators [Transcription] 237 4e-77 CDD:224791 COG1879, RbsB, ABC-type sugar transport system, peripl... 54.8 3e-09 >CDD:224525 COG1609, PurR, Transcriptional regulators [Transcription]. Length=333 Score = 237 bits (606), Expect = 4e-77, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 15/337 (4%) Query 4 AGIREVAKAAGVSISTVSRAFKRPELVSERTRRKVLETADKLDFNISRSATSLKSGQSYR 63 A I++VAK AGVS +TVSR VSE TR KVL +L + + A SL++G++ Sbjct 1 ATIKDVAKLAGVSKATVSRVLNGSPYVSEETREKVLAAIKELGYRPNAVARSLRTGRTKT 60 Query 64 VAMLMNEEITSWFNTEVFAGIDSVMHDAGYDISLFQHVDTAENRKEFFTNLPVRRNVDAV 123 + +++ + +F E+ GI+ +AGY + L D E +E+ L +++ VD + Sbjct 61 IGLVVPDITNPFF-AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETL-LQKRVDGL 118 Query 124 FVTSFGVDPKEIQQLKRIHVPIIGINTPTQSGFDATISIDDEDGMFTAAQHLINLGHKNI 183 + + ++ L +P++ I+ ++ ID+ G + A +HLI LGH+ I Sbjct 119 ILLGERPNDSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRI 178 Query 184 VYVCSDAIDSINSSIDSRGQGFIRACKTMESTHDFKWRVVSVPRGKTFADSALTALLAF- 242 ++ S+ R +G+ A + + G +S A Sbjct 179 AFIGGPLDS---SASRERLEGYRAALR----EAGLPINPEWIVEGDFSEESGYEAAERLL 231 Query 243 ---DEFPDAICCQMDMMAIPLVLRLERYGHHTPSDYSIIGFDDSPYADTVN--LTTMRQD 297 + P AI C D+MA+ + L G P D S+IGFDD A + LTT+RQ Sbjct 232 ARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDDIELARFLTPPLTTVRQP 291 Query 298 PYAMGRAAAQKAMKLIAGEPLENPYEVVRAQLVLRGT 334 +GR AA+ ++ I GEP+ V+ +L++R + Sbjct 292 IEELGRRAAELLLERINGEPVPPRRIVLPPELIVRES 328 >CDD:224791 COG1879, RbsB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]. Length=322 Score = 54.8 bits (132), Expect = 3e-09, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 115/294 (39%), Gaps = 41/294 (14%) Query 62 YRVAMLMNEEITSWFNTEVFAGIDSVMHDAGYDISLFQHVDTAENRKEF--FTNLPVRRN 119 + +++ +F G ++ G +++ + K+ +L + + Sbjct 34 KTIGVVVPTLGNPFFQAVR-KGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDL-IAQG 91 Query 120 VDAVFVTSFGVDPKE----IQQLKRIHVPIIGINTPTQ--SGFDATISIDDEDGMFTAAQ 173 VDA+ + VDP +++ K +P++ +++ A + D+ AA+ Sbjct 92 VDAIIINP--VDPDALTPAVKKAKAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAE 149 Query 174 HLIN-LGHKNIVYVCSDAIDSINSSIDSRGQGFIRACKTMESTHDFKWRVVSVPRGK--- 229 +L LG K V V NSS + R +GF A K H VV V G Sbjct 150 YLAKALGGKGKVVVLV--GSPGNSSAEERVKGFRDALKE----HPPDIEVVDVQTGDWDR 203 Query 230 TFADSALTALLAFDEFPD--AICCQMDMMAI--PLVLRLERYGHHTPSDYSIIGFDDSPY 285 A + LLA PD I D MA+ L+ D ++GFD +P Sbjct 204 DKALEVMEDLLA--ANPDIDGIYAANDGMALGAIQALKAAGRKG----DVVVVGFDGTP- 256 Query 286 ADTVNL-------TTMRQDPYAMGRAAAQKAMKLIAGEPLENPYEVVRAQLVLR 332 D + T+ QDP A G AA + A+KL+ G+ +V +LV + Sbjct 257 -DALKALKDGKLDATVLQDPAAQGAAAVELALKLLKGKKKVPKQVLVPFELVTK 309 Lambda K H a alpha 0.320 0.134 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 278588771 Query= BifidoAdolescentis.s6#1#42067#ORF16 hypothetical protein Length=88 ***** No hits found ***** Lambda K H a alpha 0.320 0.133 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37833857 Query= BifidoAdolescentis.s6#1#42067#ORF17 hypothetical protein Length=345 ***** No hits found ***** Lambda K H a alpha 0.312 0.125 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 281840780 Query= BifidoAdolescentis.s6#1#42067#ORF18 hypothetical protein Length=327 Score E Sequences producing significant alignments: (Bits) Value CDD:226287 COG3764, SrtA, Sortase (surface protein transpeptidase... 174 2e-54 >CDD:226287 COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]. Length=210 Score = 174 bits (443), Expect = 2e-54, Method: Composition-based stats. Identities = 61/185 (33%), Positives = 85/185 (46%), Gaps = 7/185 (4%) Query 81 TKDMSGAERKAMLKAAHEYNERLAANGDRWHMTDAQKREYDETLDVTGTGIMGYVTIPRI 140 T S +KA A E D + G ++GY+ IP I Sbjct 27 TAKYSELYKKAQRGRAQLKKEN---ALDAS-SNEEVVSPVSFYSPDKG-EVIGYLEIPSI 81 Query 141 KVKLPVYHGTSDGVLQIAAGHLAGTSLPVGGATTHAVISGHTGLPSARLLTGLDELEKGD 200 +VKLP+Y GT + L GH V G + V++GH G L L +L+ GD Sbjct 82 EVKLPIYEGTDEEDLLYGVGHY--KESQVPGENGNYVLAGHRGTRYGSLFRPLGKLKVGD 139 Query 201 TFAFHVLDQTYTYKVDQISVVLPSEISKLNIEPGADYATLITCTPYGINSHRLLVRGHRI 260 ++TY YKV IS+V P ++ L+ + G TLITCTPYG + RL+V+G R+ Sbjct 140 KIYVTTKNETYVYKVTDISIVDPDDVDVLDDQKGKAELTLITCTPYGSATKRLIVKGERV 199 Query 261 PNPKV 265 P V Sbjct 200 KAPGV 204 Lambda K H a alpha 0.318 0.133 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 262328726 Query= BifidoAdolescentis.s6#1#42067#ORF19 hypothetical protein Length=170 ***** No hits found ***** Lambda K H a alpha 0.310 0.124 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 102866488 Query= BifidoAdolescentis.s6#1#42067#ORF20 hypothetical protein Length=292 Score E Sequences producing significant alignments: (Bits) Value CDD:223802 COG0730, COG0730, Predicted permeases [General functio... 89.0 9e-22 >CDD:223802 COG0730, COG0730, Predicted permeases [General function prediction only]. Length=258 Score = 89.0 bits (221), Expect = 9e-22, Method: Composition-based stats. Identities = 78/247 (32%), Positives = 128/247 (52%), Gaps = 6/247 (2%) Query 37 IIVLIVVGMLVGVLSGTFGIGGGTVIVPALVWLGLSQRNAAATSTLAIVPTSISGVVSYA 96 +++L +VG+L G +SG G GGG + VPAL+ LGL A TS LA++ TS+S ++Y Sbjct 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYL 66 Query 97 TGGHVDWLAAALLFCGMFVGGQIGSWLLSRLPELVLRWIFVAFLVFVVINQV---SFVPS 153 G+VDW A +L G +G +G+ L LP +L+ +F L+ + + + + Sbjct 67 KRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKA 126 Query 154 RDHQIVMTVVTGIGLALLGVVIGTLAGLLGIGGGALAVPSLSMLFGASDLVARGTSLLAM 213 D + + L+G + G L+GL G+GGG VP+L +L +A TSL + Sbjct 127 EDRAARLRPLLFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAII 186 Query 214 FPNSITTSAANLKRRLAHV--KTALIIGVTAAVTAPLGTWIAGEVSPRVGAIMFACYLCV 271 + + AA L V AL++ V + + A LG +A +SP+V +FA L Sbjct 187 LNTA-SNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLA 245 Query 272 LLVRSVF 278 + ++ + Sbjct 246 VAIKLLL 252 Lambda K H a alpha 0.325 0.138 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 226486208 Query= BifidoAdolescentis.s6#1#42067#ORF21 hypothetical protein Length=699 Score E Sequences producing significant alignments: (Bits) Value CDD:224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion tra... 315 5e-101 >CDD:224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]. Length=482 Score = 315 bits (809), Expect = 5e-101, Method: Composition-based stats. Identities = 172/533 (32%), Positives = 225/533 (42%), Gaps = 134/533 (25%) Query 40 SVAELAQHGGAQRI---------AAIGNKNAKNVVLFIGDGMGDSEITVARDYLKGANGH 90 ++ +L+ G A R+ AA AKNV+L IGDGMG S +T AR Y G NG Sbjct 29 ALGKLSAAGAATRLFSSFTQALAAAASAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGP 88 Query 91 FDGLDAVGQPGALGDVQAGTGQYTTFSVGNGSKDSAVGKDGDGKLVANPNPGKLTPVTDS 150 F G+D + G G Y+T S ++ N VTDS Sbjct 89 FKGIDTLPDTGL-------IGTYSTHS-------------------SDSN------VTDS 116 Query 151 SASGSAWATGTKTYNNAVDVDIYGNPQLNLFELAKAAGKATGNVTTAEIQDATPAVLESH 210 +A+ +A+ATG KTYN A+ VD G P + ELAK AGKATG VTT I ATPA +H Sbjct 117 AAAATAFATGVKTYNGAIGVDPNGKPLKTILELAKEAGKATGLVTTTRITHATPAAFAAH 176 Query 211 SSERACYGPQGKTDGTSNNASKQCLINQLKENGGIGSISEQLLDTRADVTIGGGSKYFRQ 270 + R Q G G + + DV +GGG KYF Sbjct 177 VTSRDDEDEI---------------ATQQICPGNAG------RNDKVDVLLGGGRKYFLP 215 Query 271 TVQGGEYKGKT--VWEQAKEMGFQTVENDPAAMNALQYKDGQPVLALMSDGNMPTKFNPS 328 G + + E+AK G+Q VE A +NA+ +D +L L +DG++P + Sbjct 216 KATAGGRRDDGRDLIEEAKAAGYQYVETR-AELNAVSNQD-DKLLGLFADGHLPPNLDRD 273 Query 329 KATAKDPAKDANPTVCTPNADWLGNQGSSLKDMTKKALDLLNDNPNGQKNGFFLQVEGAS 388 + +P SL +MT+KA+DLL+ N K GFFL VEG Sbjct 274 RDPNDEP---------------------SLAEMTEKAIDLLSKN----KKGFFLMVEGGR 308 Query 389 IDKQDHAGNACGQIGETDDFDRAIAYAMQNVDL-TNTLVIVTADHAHTSQILNAQPAY-- 445 ID HA + G IGET FD A+ A+ + NTLVIVTADH + Y Sbjct 309 IDWAGHANDPAGAIGETVAFDEAVQAALDFAEKDGNTLVIVTADHETGGLTIGRDGVYEW 368 Query 446 -----------ALSTVLKTADGNNMVVSYGT---------------------------AQ 467 L K ADG ++ YG Sbjct 369 KPDPIKNAKHTGLGLAKKIADGAHLPDVYGNYTGIELTDETPKEIEEALNAPNSIDIIGA 428 Query 468 DDSRDADGGYNGGDMEHTGTQLRIAASGPGAQRVIGLTDQTDNFYTIAGALGL 520 S A G+ HTG + I A GPGA+ G+ D T+ F IA ALGL Sbjct 429 IISERALIGWTTH--GHTGEDVPIFAYGPGAENFRGVMDNTEIFQAIAAALGL 479 Lambda K H a alpha 0.309 0.127 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 641297120 Query= BifidoAdolescentis.s6#1#42067#ORF22 Chaperone protein DnaK Length=626 Score E Sequences producing significant alignments: (Bits) Value CDD:223520 COG0443, DnaK, Molecular chaperone [Posttranslational ... 723 0.0 CDD:224003 COG1077, MreB, Actin-like ATPase involved in cell morp... 63.4 1e-11 >CDD:223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]. Length=579 Score = 723 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 356/588 (61%), Positives = 439/588 (75%), Gaps = 20/588 (3%) Query 1 MGRAVGIDLGTTNSCIATLEGG-QPTVIVNAEGARTTPSVVAFSKSGEILVGEVAKRQAV 59 +A+GIDLGTTNS +A + GG P VI NAEG R TPSVVAFSK+GE+LVG+ AKRQAV Sbjct 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63 Query 60 TNVDRTISSVKRHMGT-----DWTVEIDGKKWTPQEISAQVLMKLKRDAEAYLGEPVTDA 114 N + TI S+KR +G +VE+DGKK+TP+EISA +L KLK DAEAYLGE VTDA Sbjct 64 DNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDA 123 Query 115 VITCPAYFNDAQRQATKDAGTIAGLNVLRIINEPTAAALAYGLEKGKEDERILVFDLGGG 174 VIT PAYFNDAQRQATKDA IAGLNVLR+INEPTAAALAYGL+KGK ++ +LV+DLGGG Sbjct 124 VITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EKTVLVYDLGGG 182 Query 175 TFDVSLLEIGKDDDGFSTIQVQATNGDNHLGGDDWDQKIIDWLVGEVKNKYGVDLSKDKI 234 TFDVSLLEIG +V AT GDNHLGGDD+D +ID+LV E K K G+DL DK Sbjct 183 TFDVSLLEIGDG-----VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKA 237 Query 235 ALQRLKEAAEQAKKELSSSTSTSISMQYLAMTPDGTPVHLDETLTRAHFEEMTSDLLGRC 294 ALQRL+EAAE+AK ELSS+T TSI++ + + L + LTRA FEE+ DLL R Sbjct 238 ALQRLREAAEKAKIELSSATQTSINLPSIGGD-----IDLLKELTRAKFEELILDLLERT 292 Query 295 RTPFNNVLRDAGIGVSDIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGA 354 P L+DAG+ SDID V+LVGGSTR+PAV+ELVKE G KE +S+NPDE VA+GA Sbjct 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGA 351 Query 355 AVQSGVIKGDRKDVLLIDVTPLSLGIETKGGIMTKLIERNTAIPTKRSEVFSTAEDNQPS 414 A+Q+ V+ G+ DVLL+DV PLSLGIET GG+ T +IERNT IP K+S+ FSTA D Q + Sbjct 352 AIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTA 411 Query 415 VLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGK 474 V I V+QGERE A DNK LG FEL GI PAPRGVPQIEVTFDIDANGI++V+AKD GTGK Sbjct 412 VAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGK 471 Query 475 EQSMTITGGSGLPKDEIDRMVKEAEAHEAEDKKRKEDAETRNQAESFAYQTEKLVNDNKD 534 EQS+TI SGL +EI+RMV++AEA+ A DKK +E E RN+AES Y EK + + Sbjct 472 EQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEI-V 530 Query 535 KLSDDVAKEVTDKVNELKEALKGEDIEKIKSAQTELMTSAQKIGQALY 582 K+S++ +++ + + +L+EAL+G + E+IK+ EL QK+ + Y Sbjct 531 KVSEEEKEKIEEAITDLEEALEG-EKEEIKAKIEELQEVTQKLAEKKY 577 >CDD:224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]. Length=342 Score = 63.4 bits (155), Expect = 1e-11, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 100/239 (42%), Gaps = 57/239 (24%) Query 3 RAVGIDLGTTNSCIATLEGGQPTVIVNAEGARTTPSVVA---FSKSGEIL-VGEVAKRQA 58 +GIDLGT N+ + G IV E PSVVA K+ +L VGE AK+ Sbjct 7 NDIGIDLGTANTLVYVKGKG----IVLNE-----PSVVAIESEGKTKVVLAVGEEAKQM- 56 Query 59 VTNVDRTISSVK--RHMGTDWTVEIDG----KKWTPQEISAQVLMKLKRDAEAYLGEPVT 112 + RT ++ R M DG + T + + K Sbjct 57 ---LGRTPGNIVAIRPMK-------DGVIADFEVTELMLKYFIKKVHKNG-----SSFPK 101 Query 113 DAVITC-PAYFNDAQRQATKDAGTIAGLNVLRIINEPTAAALAYGLEKGKEDERILVFDL 171 ++ C P+ D +R+A K+A AG + +I EP AAA+ GL + ++V D+ Sbjct 102 PRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV-DI 160 Query 172 GGGTFDV---SLLEIGKDDDGFSTIQVQATNGDNHLGGDDWDQKIIDWLVGEVKNKYGV 227 GGGT +V SL I +++V GGD D+ II V+ KY + Sbjct 161 GGGTTEVAVISLGGIVSSS----SVRV---------GGDKMDEAIIV----YVRKKYNL 202 Lambda K H a alpha 0.310 0.130 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 567965968 Query= BifidoAdolescentis.s6#1#42067#ORF23 Protein GrpE Length=222 Score E Sequences producing significant alignments: (Bits) Value CDD:223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock pr... 120 7e-35 >CDD:223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]. Length=193 Score = 120 bits (302), Expect = 7e-35, Method: Composition-based stats. Identities = 47/144 (33%), Positives = 77/144 (53%), Gaps = 8/144 (6%) Query 83 QAKKEAAEYLEALQRERAEFINFRNRAQKEQERFRQHGIIDVLTALLPALDDIDRIREHS 142 + + + E + R +AEF N R R ++E+E +++ I LLP +D+++R E + Sbjct 47 ELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAA 106 Query 143 EMDDS--------FKAVANKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPNAEKET 194 E D + +++ A EK GVE+ G +GE FDP H+A+ + E T Sbjct 107 EDDKDPEKALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNT 166 Query 195 VDTVVEAGYRIGDRVIRAARVVVA 218 V V++ GY++ DRV+R A V VA Sbjct 167 VVEVLQKGYKLNDRVLRPAMVKVA 190 Lambda K H a alpha 0.310 0.128 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 155592795 Query= BifidoAdolescentis.s6#1#42067#ORF24 Curved DNA-binding protein Length=341 Score E Sequences producing significant alignments: (Bits) Value CDD:223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-t... 230 5e-74 CDD:225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttra... 111 1e-29 CDD:227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [... 65.4 1e-12 CDD:227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [T... 52.0 2e-08 >CDD:223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]. Length=371 Score = 230 bits (589), Expect = 5e-74, Method: Composition-based stats. Identities = 123/401 (31%), Positives = 169/401 (42%), Gaps = 122/401 (30%) Query 6 WLSKDFYKVLGVSKDATDAEITKAYRKLARKYHPDLNK-TKEAEEKFKDISEAYDVLSNK 64 +D+Y++LGVSKDA++ EI KAYRKLA+KYHPD N KEAEEKFK+I+EAY+VLS+ Sbjct 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 Query 65 ENRQKYDAIRQFGMGGARFAGGSGQGGFDAGAFSDIFGSMFGGGAGMGGNGSRIRFQTNG 124 E R YD QFG G + AGG G GF G Sbjct 61 EKRAAYD---QFGHAGFK-AGGFGGFGF-------------------------------G 85 Query 125 GGNPNLNDIFSMFGGGAGGPGAGSAYERYGADDYEQPQPENGEDRNSKIRLTFRQAVKGA 184 G + DIF F GG GG R GAD + +T +AV G Sbjct 86 GFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYN------------LEITLEEAVFGV 133 Query 185 TVSLSA------------------------------------------------------ 190 + Sbjct 134 KKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTG 193 Query 191 -----------------DGKKFKTHIPAGVRDGQKIRLTGKGKPGRNGGKNGDLYLHITV 233 K +IPAGV DG +IRL+G+G+ G NGG GDLY+ + V Sbjct 194 KIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHV 253 Query 234 AEDPKFTLRGRDIIMPLPITVSQAVNGAKVTATDIDGNEIAFKVPAGSSSGAEVRIAGKG 293 P F G D+ +PI+ ++A G ++ +DG + K+PAG+ +G R+ GKG Sbjct 254 KPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDG-RVKLKIPAGTQTGEVFRLRGKG 312 Query 294 VANPHEN--GDLVGRVEIRIPEHPNLVAKHAAKEFDKACGD 332 + GDL RV++ P++ + K +EF K+ G+ Sbjct 313 MPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGE 353 >CDD:225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]. Length=237 Score = 111 bits (277), Expect = 1e-29, Method: Composition-based stats. Identities = 68/244 (28%), Positives = 99/244 (41%), Gaps = 24/244 (10%) Query 8 SKDFYKVLGVSKDATDAEITKAYRKLARKYHPDLNK--TKEAEEKFKDISEAYDVLSNKE 65 D+Y++LGV +A+ EI KAYRKLA KYHPD N K AEEKFK+I+EAY++LS+ E Sbjct 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64 Query 66 NRQKYDAIR-QFGMGGARFAGGSGQGGFDAGAFSDIFGSMFGGGAGMGGNGSRIRFQTNG 124 R +YD I G + + + + + + Sbjct 65 RRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGL-------------YEEWRGKRNKT 111 Query 125 GGNPNLNDIFSMFGGGAGGPGAGSAYERYGADDYEQPQPENGEDRNSKIRLTFRQAVKGA 184 +L D+ S G + A E + D + + F +A+ G Sbjct 112 ERKASLADLLSRGLSGLAAALSLFADEA-ALRSGSLRRR----DLAANLADNFEEALAGV 166 Query 185 TVSLSADGKKFKTH-IPAGVRDGQKIRLTGKGKPGRNGGKNGDLYLHITVAEDPKFTLRG 243 +++ K I AG +G+ +RL G K R G G L P F L G Sbjct 167 KKAVARLLGKALKSTIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFALEG 224 Query 244 RDII 247 D Sbjct 225 DDKY 228 >CDD:227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]. Length=610 Score = 65.4 bits (159), Expect = 1e-12, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 47/67 (70%), Gaps = 6/67 (9%) Query 10 DFYKVLGVSKDATDAEITKAYRKLARKYHPD-----LNKTK-EAEEKFKDISEAYDVLSN 63 D Y++LG+ +D ++ +I K YR L+ K+HPD +N+ + E EEK+K I++AY +L++ Sbjct 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 Query 64 KENRQKY 70 K+ R+ Y Sbjct 159 KKRRENY 165 >CDD:227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]. Length=379 Score = 52.0 bits (124), Expect = 2e-08, Method: Composition-based stats. Identities = 28/74 (38%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query 5 EWLSKDFYKVLGVSK---DATDAEITKAYRKLARKYHPDL---NKTKEAEEKFKDISEAY 58 W D Y +LG+SK A +I KA++K KYHPD K +E FK I +A Sbjct 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAR 98 Query 59 DVLSNKENRQKYDA 72 +VL +++ R +YD+ Sbjct 99 EVLGDRKLRLQYDS 112 Lambda K H a alpha 0.314 0.136 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 277504768 Query= BifidoAdolescentis.s6#1#42067#ORF25 hypothetical protein Length=178 Score E Sequences producing significant alignments: (Bits) Value CDD:223860 COG0789, SoxR, Predicted transcriptional regulators [T... 60.5 3e-13 >CDD:223860 COG0789, SoxR, Predicted transcriptional regulators [Transcription]. Length=124 Score = 60.5 bits (147), Expect = 3e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (3%) Query 28 FSVGAAGELANVHPQTLRQYDRLGLVVP-QRTEGGARRYSLRDISRLAQAQQLSQEEGIN 86 +++G +L V +TLR Y+R GL+ P +R EGG R Y+ D+ L + L +E G + Sbjct 1 YTIGEVAKLTGVSVRTLRFYERKGLLSPERRDEGGYRYYTPEDLELLQIIKTL-RELGFS 59 Query 87 LAGITRI 93 LA I + Sbjct 60 LAEIKEL 66 Lambda K H a alpha 0.318 0.134 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 110210859 Query= BifidoAdolescentis.s6#1#42067#ORF26 hypothetical protein Length=90 ***** No hits found ***** Lambda K H a alpha 0.319 0.132 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37531731 Query= BifidoAdolescentis.s6#1#42067#ORF27 Phosphoglycolate phosphatase Length=240 Score E Sequences producing significant alignments: (Bits) Value CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomut... 126 1e-36 CDD:223620 COG0546, Gph, Predicted phosphatases [General function... 94.8 1e-24 CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily... 61.5 2e-12 >CDD:223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]. Length=221 Score = 126 bits (317), Expect = 1e-36, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 6/187 (3%) Query 19 MLKAVFWDMDGTLIDSEPYWHEGELKIAADHGGYWDEDLAWQGSGTPVPDVACRMVEHGC 78 M+KAV +DMDGTL+DSEP L+ ++G ++ + G + + + + Sbjct 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAA 60 Query 79 KLSIEEIG--KGMIDYVAQKEFERIPWIDGVEDVLLSLKEAGVPSMLVTTSPRHLAENLI 136 ++ + ++ E E + I GV ++L LK G+P + ++SPR AE ++ Sbjct 61 GEDPADLAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL 120 Query 137 AQAP-DGTFAGYVCGDDDVEKKPSPAPYLAAGRKLGIAPEDMKYCIAVEDSMSGLRSAAA 195 A+ F V DD KP+P YL A +LG+ PE+ C+ VEDS +G+++A A Sbjct 121 ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE---CVVVEDSPAGIQAAKA 177 Query 196 SGATTLG 202 +G +G Sbjct 178 AGMRVVG 184 >CDD:223620 COG0546, Gph, Predicted phosphatases [General function prediction only]. Length=220 Score = 94.8 bits (236), Expect = 1e-24, Method: Composition-based stats. Identities = 53/192 (28%), Positives = 86/192 (45%), Gaps = 15/192 (8%) Query 19 MLKAVFWDMDGTLIDSEPYWHEGELKIAADHG-GYWDEDLAWQGSGTPVPDVACRMVEHG 77 M+KA+ +D+DGTL+DS A+ G DE+ Q G + + ++E Sbjct 3 MIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDE----LIERL 58 Query 78 CKLSIEEIGKGMIDYVAQ------KEFERIPWIDGVEDVLLSLKEAGVPSMLVTTSPRHL 131 + EE +++ + + E GV+++L +LK AG +VT P Sbjct 59 LGEADEEAAAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERE 118 Query 132 AENLIAQ-APDGTFAGYVCGDDDVEKKPSPAPYLAAGRKLGIAPEDMKYCIAVEDSMSGL 190 + L+ F V GDD KP P P L KLG+ PE+ + V DS++ + Sbjct 119 LDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA---LMVGDSLNDI 175 Query 191 RSAAASGATTLG 202 +A A+G +G Sbjct 176 LAAKAAGVPAVG 187 >CDD:223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]. Length=229 Score = 61.5 bits (149), Expect = 2e-12, Method: Composition-based stats. Identities = 35/186 (19%), Positives = 62/186 (33%), Gaps = 24/186 (13%) Query 19 MLKAVFWDMDGTLIDSEPYWHEGELK---------IAADHGGYWDEDLAWQGSGTPVPDV 69 M+KA+ +D+DGTL+D + L + + Sbjct 3 MIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEA----RFLRG 58 Query 70 ACRMVEHGCKLSIEEIGKGMIDYVAQKEFERIPW-----IDGVEDVLLSLKEAG--VPSM 122 + E+ + ++ + E + + + L +LKE G Sbjct 59 EYTGEYGLTLERLLELLERLLGDEDAELVEELLAALAKLLPDYPEALEALKELGKKYKLG 118 Query 123 LVTTSPRHLAENLIAQAP-DGTFAGYVCGDDDVEKKPSPAPYLAAGRKLGIAPEDMKYCI 181 ++T R E + Q F +D KP P + A KLG+ PE+ + Sbjct 119 ILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEE---AL 175 Query 182 AVEDSM 187 V DS+ Sbjct 176 FVGDSL 181 Lambda K H a alpha 0.316 0.134 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 173582276 Query= BifidoAdolescentis.s6#1#42067#ORF29 Protein DedA Length=233 Score E Sequences producing significant alignments: (Bits) Value CDD:223659 COG0586, DedA, Uncharacterized membrane-associated pro... 159 7e-50 CDD:223475 COG0398, COG0398, Uncharacterized conserved protein [F... 48.1 1e-07 >CDD:223659 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]. Length=208 Score = 159 bits (404), Expect = 7e-50, Method: Composition-based stats. Identities = 71/209 (34%), Positives = 118/209 (56%), Gaps = 8/209 (4%) Query 13 DPRTAIASWIAMGVAPTLGFIFLIVFIETGVVFFPFLPGDSLLFAAGFFAAPDAQTGVSA 72 + WI G LG +FLI+F+E+G++ P LPG+ LL AG A Sbjct 1 IDMELLILWIQEGSLGYLG-VFLILFLESGLLVGPPLPGEVLLLLAGALA------AQGK 53 Query 73 LPLFALLPVVWCAPVIGDQCNYWIGHFFGRRILES-GKVKAMTPERIEKTEKMIEKWGPL 131 L L+ ++ V ++GD +YWIG FGR++L + + ++++K E + E+ G Sbjct 54 LNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFERHGLF 113 Query 132 AVFLGRFFPFIRTFMPFISGISGMRWSRFTPFSVLGGLCWSTLFTLLGYFFGGIPAVQKH 191 A+FLGRF P +RT +P ++G+S M RF +++LG L W+ + TLLGY G + V H Sbjct 114 AIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDVLVH 173 Query 192 FELVIIAILVLSLIPTIVGLLKAKFGKKK 220 LV++ ILVL+++ ++ L + +++ Sbjct 174 LLLVLLGILVLAVLVLVLLLALLWWLRRR 202 >CDD:223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]. Length=223 Score = 48.1 bits (115), Expect = 1e-07, Method: Composition-based stats. Identities = 36/192 (19%), Positives = 74/192 (39%), Gaps = 18/192 (9%) Query 32 FIFLIVFIETGVVFFPFLPGDSLLFAAGFFAAPDAQTGVSALPLFALLPVVWCAPVIGDQ 91 + + V P +PG L A G F G Sbjct 49 GPLVFFILLYLVATLPIIPGSILTLAGGL-----------LFGPFLGFLYSLIGATAGST 97 Query 92 CNYWIGHFFGRRILESGKVKAMTPERIEKTEKMIEKWGPLAVFLGRFFPFIRT-FMPFIS 150 + + + GR + E++++ + +E+ G A+ L R P + + + Sbjct 98 LAFLLARYLGRDWV---LKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAA 154 Query 151 GISGMRWSRFTPFSVLGGLCWSTLFTLLGYFFGGIPAVQKHFELVIIAILVLSLIPTIVG 210 G++G+ + F ++LG L + ++T LG F GI + L+++A+L+L + + Sbjct 155 GLTGISFRDFAIATLLGKLPGTIVYTYLGSAFLGIGS---PLLLLVLALLILGVFAIVAK 211 Query 211 LLKAKFGKKKPA 222 + + K+K Sbjct 212 RKELRRHKRKDG 223 Lambda K H a alpha 0.330 0.146 0.470 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 167731240 Query= BifidoAdolescentis.s6#1#42067#ORF30 hypothetical protein Length=291 Score E Sequences producing significant alignments: (Bits) Value CDD:223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] 93.8 3e-23 CDD:224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacy... 77.2 1e-16 >CDD:223730 COG0657, Aes, Esterase/lipase [Lipid metabolism]. Length=312 Score = 93.8 bits (233), Expect = 3e-23, Method: Composition-based stats. Identities = 62/232 (27%), Positives = 89/232 (38%), Gaps = 13/232 (6%) Query 31 PNRKRPSVLVIPGGGYEMTSDREAEPIAMQFLAA-GFNAFVLRYSVKPSI-FPVALLEAA 88 P VL + GGG+ + S R + + + AA G + Y + P FP AL +A Sbjct 75 AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAY 134 Query 89 EAMRRIHTHADEWHCDADAIAVIGFSAGGHLAANLATSASDD--------VLAAHGYDAD 140 A R + +A E D IAV G SAGGHLA LA +A D VL + D Sbjct 135 AAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 Query 141 AVRPNGLMLAYPVVTSGPLAHRGSFDALLGDRKADPEALDAVSIEKHIDAKTPPVFVWHT 200 + + + D LG D E +A + + PP + Sbjct 195 SSAASLPGYGEADLLDAAAILAWFADLYLG-AAPDREDPEASPLASDDLSGLPPTLIQTA 253 Query 201 VPDDCVPYENTLMLVDACKKAGVSVEAHLFPNGGHGLSLGTAETAWQGVNGI 252 D + + + + AGV VE ++P HG L T A + I Sbjct 254 -EFDPL-RDEGEAYAERLRAAGVPVELRVYPGMIHGFDLLTGPEARSALRQI 303 >CDD:224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]. Length=620 Score = 77.2 bits (190), Expect = 1e-16, Method: Composition-based stats. Identities = 60/253 (24%), Positives = 84/253 (33%), Gaps = 35/253 (14%) Query 1 MRYFEDEISGIDGSTATFVGYCLDNSSEIDPNRKRPSVLVIPGGGYEMTSDREAEPIAMQ 60 DG T Y DP +K P ++ I GG P Sbjct 365 PEPVT--YKSNDGETIHGWLYKPPGF---DPRKKYPLIVYIHGGP-SAQVGYSFNPEIQV 418 Query 61 FLAAGFN--------------AFVLRYSVKPSIFPVA-LLEAAEAMRRIHTHADEWHCDA 105 +AG+ F + L+ A +A+ + D Sbjct 419 LASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVK-LPLVDP----- 472 Query 106 DAIAVIGFSAGGHLAANLATSASDDVLAAHGYDADAVRPNGLMLAYPVVTSGPLAHRGSF 165 + I + G S GG++ AT A A AV L Y ++ L R Sbjct 473 ERIGITGGSYGGYMTLLAAT--KTPRFKA----AVAVAGGVDWLLYFGESTEGL--RFDP 524 Query 166 DALLGDRKADPEALDAVSIEKHIDAKTPPVFVWHTVPDDCVPYENTLMLVDACKKAGVSV 225 + G D E + S + D P+ + H DD VP E LVDA K+ G V Sbjct 525 EENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPV 584 Query 226 EAHLFPNGGHGLS 238 E +FP+ GHG S Sbjct 585 ELVVFPDEGHGFS 597 Lambda K H a alpha 0.319 0.133 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 225397332 Query= BifidoAdolescentis.s6#1#42067#ORF31 Ribosomal RNA small subunit methyltransferase I Length=353 Score E Sequences producing significant alignments: (Bits) Value CDD:223390 COG0313, COG0313, Predicted methyltransferases [Genera... 306 6e-105 >CDD:223390 COG0313, COG0313, Predicted methyltransferases [General function prediction only]. Length=275 Score = 306 bits (787), Expect = 6e-105, Method: Composition-based stats. Identities = 118/289 (41%), Positives = 180/289 (62%), Gaps = 18/289 (6%) Query 64 GTVVLAATPIGNTGDASARLIALMEGADIVAAEDTRRLYALANRLGIRVPGRVVAYHDHN 123 GT+ L TPIGN D + R + +++ D++AAEDTR L + LGI+ P +++YH+HN Sbjct 5 GTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTP--LISYHEHN 62 Query 124 ERDKADGLLDQVEQGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDAL 183 E++K L+ +++G +V +VSDAG P I+DPG +VR A E G+ V PGPSA++ AL Sbjct 63 EKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITAL 122 Query 184 CLSGLPTDRFCYEGFLPRKHSERVQHLRALKSERRTIVFYETLHRIDESMADLLDVLGPN 243 SGLP+ RF +EGFLPRK ER + L AL +E RT++FYE+ HR+ ++ D+++VLG + Sbjct 123 SASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIFYESPHRLLATLEDIVEVLGSD 182 Query 244 RKMALCRELTKDYEQIRRGTIAEIRQSVVDDPPRGEMVLVIAGASEEEADAAAPATLSIE 303 R++ + RELTK +E+I RGT++E+ + + +D +GE VLV+ E A A LS++ Sbjct 183 REVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVV------EGKNKAEAELSLD 236 Query 304 DLAVLSVDRAQEDNLRIKDAISQVVAEHPLSDGSLANRKQVYNAVLAMK 352 L + +A L +K A L N+K++Y L K Sbjct 237 AEITLLLLQA----LPLKKAAKLAAKITGL------NKKELYQLALESK 275 Lambda K H a alpha 0.316 0.133 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 290512804 Query= BifidoAdolescentis.s6#1#42067#ORF32 hypothetical protein Length=163 ***** No hits found ***** Lambda K H a alpha 0.315 0.128 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 96576882 Query= BifidoAdolescentis.s6#1#42067#ORF33 hypothetical protein Length=234 ***** No hits found ***** Lambda K H a alpha 0.323 0.135 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0763 0.140 1.90 42.6 43.6 Effective search space used: 166990544 Query= BifidoAdolescentis.s6#1#42067#ORF34 Methionine--tRNA ligase Length=620 Score E Sequences producing significant alignments: (Bits) Value CDD:223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation,... 628 0.0 CDD:223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ri... 97.7 6e-22 CDD:223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, rib... 71.5 1e-13 CDD:223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation,... 67.6 1e-12 >CDD:223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length=558 Score = 628 bits (1622), Expect = 0.0, Method: Composition-based stats. Identities = 237/601 (39%), Positives = 329/601 (55%), Gaps = 57/601 (9%) Query 1 MSHILVNVAWPYANGPRHIGHVAGFGVPSDVYARYERMKGNDVLMVSGTDEHGTPILVEA 60 M ILV A PY NGP H+GH+ + + +DVYARY R++G +V ++GTDEHGT I ++A Sbjct 4 MKKILVTTALPYPNGPPHLGHLYTY-LAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA 62 Query 61 DKEGVSAQELANRYNRVIAKDLCDLGLSYDLFTRTTTGNHEKVVQELFKQCLENGYIYKG 120 +KEG++ QEL ++ + + L +S+D F RTT+ H+++VQE F + ENG IY Sbjct 63 EKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLR 122 Query 121 TQKVAISPSTGRTLPDRYIEGTCPICGADGARGDQCDACGNELDPDELLNPVSKINGETP 180 + S R LPDRY+EGTCP CG + ARGDQC+ CG LDP EL+NPV I+G TP Sbjct 123 EYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATP 182 Query 181 RFEETEHFFLDLPALAEANLAWLKTRE--GWRTNVINFSIGLFKE-VKPRAITR-DIDWG 236 E EH+F L + L W ++ W N N + KE +K +ITR D+DWG Sbjct 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 Query 237 IPVPVKGWIDNPNKKLYVWFDAVIGYLSASIEWARRKGDPEAWRAWWNDPTTPGYYFMGK 296 IPVP +P K +YVWFDA+IGY+SA E A GD E ++ +W T +F+GK Sbjct 243 IPVP-----GDPGKVIYVWFDALIGYISALGELAEI-GDDEDFKKFWPADDTELVHFIGK 296 Query 297 DNITFHSQIWPSEMLAYNGQGSKGGETGKLGPLNMPEQVVASEFMTMEGKKFSSSRGIVI 356 D I FH+ WP+ ++A L +P ++ A F+T+EG+K S SRG V+ Sbjct 297 DIIRFHAVYWPAMLMAAG--------------LPLPTRIFAHGFLTLEGQKMSKSRGNVV 342 Query 357 YVKDILARYPVDAVRYYISVAGPESSDSDFTWAEFVRHNNEELAASWGNLVNRVANLINK 416 ++L +Y VDA+RYY++ PE SD DF+W +FV N +LA GNL NR INK Sbjct 343 DPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK 402 Query 417 NF-GEIPAFDEASATDEDRALLAETKAAFETVGGLIENHRQKNALSEAMRVVGDINKYIS 475 F G +PA +ED LLA + A E V +E + + AL E M + NKYI Sbjct 403 YFDGVVPAAGA-PDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYID 461 Query 476 ATEPWKIK--DNPARLGTVLHTAAQAVSDANHLLAPFLPHSAQKVWEALGGTGVFSPLPR 533 PWK+ D RL TVL+ A + V LL PF+P +A+K+W+ LG Sbjct 462 EQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW 521 Query 534 LEEVEDLDKPGFTYPIITGDYKLGETVHPWASEPIVAGTSVPKPHPIFAKIPPEAVEEEL 593 L A +P++ G + P P+F +I EA+EE + Sbjct 522 LG----------------------------ARQPLLPGHKLGPPEPLFPRIEEEAIEELI 553 Query 594 A 594 Sbjct 554 E 554 >CDD:223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length=814 Score = 97.7 bits (244), Expect = 6e-22, Method: Composition-based stats. Identities = 149/752 (20%), Positives = 216/752 (29%), Gaps = 257/752 (34%) Query 6 VNVAWPYANGPRHIGHVAGFGVPSDVYARYERMKGNDVLMVSGTDEHGTPILVEADKEGV 65 V V +PY +G H+GHV + DV ARY+RM+G +VL G D G P A K G Sbjct 38 VLVMFPYPSGALHVGHVRNY-TIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96 Query 66 SAQELANRYN-RVIAKDLCDLGLSYDLFTR---TTTGNHEKVVQELFKQCLENGYIYKGT 121 + YN + K L LG S D + R T + K +Q F + E G Y+ Sbjct 97 DPAKWT-YYNIAYMKKQLKSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKE 154 Query 122 QKVAISPSTGRTLPD-RYIEGTCPICGADGAR----------GDQCDACGNELDPDELLN 170 V P G L + + I+G C CG D D ++LD L Sbjct 155 APVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLW 214 Query 171 P-------------------VSKINGETPRFEET-------------------EHFFLDL 192 P ++GE EH + Sbjct 215 PETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGK 274 Query 193 --------------------------PALAEANLAWLKTREG----------WRTN---- 212 PA AE + +L W N Sbjct 275 LVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLM 334 Query 213 ------------------------------------------------VIN--FSIGLFK 222 +IN GL Sbjct 335 EYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDY 394 Query 223 EVKPRAITRDI---------------DWGIPVPVKGWIDNPNKKLYVWFDAVIGYLSASI 267 E I + DW W P + G + Sbjct 395 EEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRY-WG-EPIP---IIHCEDCGVVPVPE 449 Query 268 EW------ARRKGDPEAWRAWWND-------PTTPGY-------YFMGKDNITFHSQIWP 307 +W R +G W++ P + Y F+ Sbjct 450 DWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYL------ 503 Query 308 SEMLAYNGQGSK-----------------GG-------------ETGKLGPLNM-----P 332 G GG L + P Sbjct 504 -RFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEP 562 Query 333 EQVVASEFMTM--EGKKFSSSRGIVIYVKDILARYPVDAVRYYISVAGPESSDSDFTWAE 390 + + ++ M + EG+K S S+G V+ ++ + +Y D VR YI A P + D W Sbjct 563 FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAP--PEQDLEW-- 618 Query 391 FVRHNNEELAASWGNLVNRVANLINKNFGEIPAFDEASATDEDRALLAET-KAAFETVGG 449 +E + RV NL+ ++ ++ EDR LL T K E Sbjct 619 -----SESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTED--- 670 Query 450 LIENHRQKNAL-SEAMRVVGDINKYISATEPWKIKDNPARLGTVLHTAAQAVSDANHLLA 508 E + N + M ++ + KY+ TE + L L T + LLA Sbjct 671 -FEARQTFNTAIAALMELLNALRKYLRRTE-----GDRKVLREALETWVR-------LLA 717 Query 509 PFLPHSAQKVWEALGGTGVFSPLPRLEEVEDL 540 PF PH A+++WE LG G S P E E+ Sbjct 718 PFAPHIAEELWEELGNEGFVSNAPWPEPDEEA 749 >CDD:223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length=877 Score = 71.5 bits (176), Expect = 1e-13, Method: Composition-based stats. Identities = 130/717 (18%), Positives = 227/717 (32%), Gaps = 232/717 (32%) Query 11 PYANGPRHIGHVAGFGVPSDVYARYERMKGNDVLMVSGTDEHG--TPILVEA--DKEGVS 66 P G H+GH + + D+ ARY+RM+G +VL GTD G T ++VE EG++ Sbjct 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGIT 100 Query 67 A------------QELANRYNRVIAKDLCDLGLSYDLFTR---TTTGNHEKVVQELFKQC 111 E I + L LG+S D ++R T + VQE F + Sbjct 101 RHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVD-WSRERFTMDPGLSRAVQEAFVRL 159 Query 112 LENGYIYKGTQKV--------AIS------------------------------------ 127 E G IY+G + V AIS Sbjct 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPET 219 Query 128 --------------------------PSTGRTLP---DRYIE-----GTCPICGADGARG 153 P GR +P D Y++ G I A Sbjct 220 LLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPA----H 275 Query 154 DQCDA-CGNE--LDPDELLNPVSKINGETP-------RF-------------------EE 184 D D G L +++ +IN E RF E Sbjct 276 DFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEP 335 Query 185 TEH-------------------FFLDLPALAEANLAWLKTR------EGWRTNVINFSIG 219 +H +F+ + LA+ L +K E ++ Sbjct 336 HKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDW--- 392 Query 220 LFKEVKPRAITRDIDWGIPVPVKGWIDNPNKKLYVWFDAVIGYLSASI-EWARRKGDPEA 278 + ++ I+R + WG +PV W + V + +A + D + Sbjct 393 -MENIRDWCISRQLWWGHRIPV--WYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDV 449 Query 279 WRAWWNDPTTPGYYFMGKDNITFHSQIWPSEMLAYNGQGSKGGETGKLGPLNMPEQ---- 334 W F S +WP + G + + K P ++ Sbjct 450 LDTW------------------FSSSLWP---FSTLGWPEETPDLKKFYPTDLLVTGHDI 488 Query 335 --------VVASEFMT----------------MEGKKFSSSRGIVIYVKDILARYPVDAV 370 ++ +T +G+K S S+G VI D++ +Y DA+ Sbjct 489 IFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADAL 548 Query 371 RYYISVAGPESSDSDFTWAEFVRHNNEELAASWGNLVNRVAN-----LINKNFGEIPAFD 425 R+ ++ D + + + + N +N++ N L+N + D Sbjct 549 RFTLASLASPGRD--------INFDEKRVEGYR-NFLNKLWNATRFVLMNLDDLGPDDLD 599 Query 426 EASATDEDRALLAETKAAFETVGGLIENHRQKNALSEAMRVVGDI--NKYISATEPWKIK 483 + + DR +L+ + V ++N+R A + + + Y+ +P ++ Sbjct 600 LLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP-RLY 658 Query 484 DNPARLGTVLHTAAQAVSDANHLLAPFLPHSAQKVWEALGGTG--VFSPLPRLEEVE 538 T + LL PF+P +++W+ L GT + P ++E Sbjct 659 GGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASWPEVDEEL 715 >CDD:223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length=933 Score = 67.6 bits (166), Expect = 1e-12, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 109/289 (38%), Gaps = 57/289 (20%) Query 254 VWFDAVIGYLSASIEWARRKGDPE-AWRAWWNDPTTPGYYFMGKDNIT--FHSQIWPSEM 310 VWFD S S +A + A + D +Y G D F+S + S Sbjct 531 VWFD------SGSTPYAVLHPRENLKFPALFAD-----FYLEGSDQTRGWFYSSLLTS-- 577 Query 311 LAYNGQGSKGGETGKLGPLNMP-EQVVASEFMTME-GKKFSSSRGIVIYVKDILARYPVD 368 A G+ P + V+ F+ E G+K S S G V+ +D++ +Y D Sbjct 578 TALFGRA--------------PYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGAD 623 Query 369 AVRYYISVAGPESSDSDFTWAEFVRHNNEELAASWGNLVNRVANLINKNFGEIPAFDEAS 428 +R ++ + D F+ E ++ E + NL + + + E Sbjct 624 ILRLWV-ASSDYWEDLRFSD-EILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEEL 681 Query 429 ATDEDRALLAETKAAFETVGGLIENHRQKNALSEAMRVVG--------DINK---YISAT 477 DR +L+ + + V EN+ + M V DI K Y A Sbjct 682 RE-LDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA- 739 Query 478 EPWKIKDNPARLG--TVLHTAAQAVSDANHLLAPFLPHSAQKVWEALGG 524 D+P R T L+ +A+ LLAP LP +A+++W+ L G Sbjct 740 -----ADSPDRRAAQTTLYHILKALV---RLLAPILPFTAEEIWQNLPG 780 Lambda K H a alpha 0.316 0.135 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 561608140 Query= BifidoAdolescentis.s6#1#42067#ORF35 hypothetical protein Length=582 ***** No hits found ***** Lambda K H a alpha 0.330 0.143 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 521341896 Database: COG.3-28-17 Posted date: Nov 27, 2018 3:02 PM Number of letters in database: 1,498,208 Number of sequences in database: 4,873 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Window for multiple hits: 40