Graphical outputReading the outputTextual output

Textual output

The text output simply presents the list of genes predicted with possible partial genes on the border of the sequence and possible frameshifts. For each region predicted, you can read the beginning, the end and the coding phase of the coding region predicted.

Using the first example sequence available on the web, a noisy high GC content sequence with 'N's, selecting the correct organism (Ralstonia) and a frameshift penalty of 8 (for low quality sequences), we get the following prediction:

 Start End Ph. 
  148 911 1 |
 | 912 1181 3
   1254 1387 3 > 

A first gene is predicted on phase 1, from 148 to 1181 interrupted by a predicted frameshift between position 911 and 912. Then a partial gene starts at 1254 on phase 3.


Graphical outputReading the outputTextual output