Index of /~formation/snakemake

Name	Last modified	Size

Parent Directory		-
Snakefile.ck	20-Sep-2018 11:18	578
Snakefile.exo1	20-Sep-2018 11:18	154
Snakefile.olivier	20-Sep-2018 11:18	1
Snakefile.oxe2	20-Sep-2018 11:18	215
Snakemake_resources.txt	21-Sep-2018 09:24	2.7K
cluster.cmd	20-Sep-2018 17:28	822

Snakemake training 20/21 septembre 2018

Slides https://slides.com/johanneskoester/snakemake-tutorial#/
Tuto : https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html#tutorial
Workflows existants: https://github.com/snakemake-workflows/docs
- rna-seq-star-deseq2
- dna-seq-gatk-variant-calling
- accel-amplicon-trimming
- single-cell-rna-seq

Création d’un template de workflow avec cookiecutter
The structure of the workflow should follow our template. You can create a new workflow with cookiecutter via
cookiecutter gh:snakemake-workflows/cookiecutter-snakemake-workflow.