Inputs and parameters
Parameters
- Run functional and taxonomic annotations Yes
- Run MEGAN Yes
- Run annotations with COGs Yes
- Build submission files Yes
- Run blast against your own fasta file No
Annotation
Result table
Prokka Fasta files | Prokka annotation | Diamond fosmid against NR | Diamond fosmid against Uniprot | Diamond ORFs against NR | Diamond ORFs against Uniprot | COGs annotation |
---|---|---|---|---|---|---|
DNA - PROT | GFF | TSV | TSV | TSV | TSV | RPSBLAST |
Result table by fosmid
Sample | Length | GC% | A | T | G | C | N | Prokka | GenBank | Annotated ORFs against Uniprot |
Annotated ORFs against NR |
MEGAN | COGs | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BifidoAdolescentis.s2 | 35132 | 57.73 | 7558 | 7294 | 10124 | 10156 | 0 | Fasta | GBK | 21 / 38 | 32 / 38 | DNA replication, recombination, and repair | ||||
BifidoAdolescentis.s6 | 42067 | 59.58 | 8598 | 8404 | 12932 | 12133 | 0 | Fasta | GBK | 19 / 35 | 33 / 35 | Carbohydrate transport and metabolism |
Produced by MEGAN5
BifidoAdolescentis.s2#1#35132
Based on Diamond results of each ORF against NR, details for each annotated ORFs (32/38)
ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
---|---|---|---|---|---|
%iden. | Coverage | Species | |||
ORF1 | 698 |
99.5%
|
88.6 |
99.5%
|
Bifidobacterium pseudolongum |
ORF2 | 920 |
99.5%
|
85.9 |
99.5%
|
Bifidobacterium dentium |
ORF3 | 1000 |
99.7%
|
99.4 |
98.3%
|
Bifidobacterium adolescentis |
ORF4 | 31 |
99.3%
|
98.5 |
99.3%
|
Bifidobacterium adolescentis |
ORF5 | 995 |
99.5%
|
83.4 |
99.5%
|
Bifidobacterium pseudocatenulatum |
ORF6 | 993 |
99.7%
|
99.2 |
99.7%
|
Bifidobacterium adolescentis |
ORF7 | 1000 |
99.7%
|
94.5 |
99.7%
|
Bifidobacterium dentium |
ORF8 | 42 |
99.8%
|
99.6 |
99.8%
|
Bifidobacterium adolescentis |
ORF9 | 1000 |
99.8%
|
99.8 |
99.8%
|
Bifidobacterium adolescentis |
ORF10 | 21 |
98.9%
|
98.9 |
98.9%
|
Bifidobacterium adolescentis |
ORF11 | 251 |
99.7%
|
99.0 |
99.7%
|
Bifidobacterium adolescentis |
ORF12 | 998 |
99.6%
|
99.6 |
99.6%
|
Bifidobacterium adolescentis |
ORF13 | 1000 |
99.9%
|
99.6 |
99.9%
|
Bifidobacterium adolescentis |
ORF14 | 1 |
96.4%
|
71.4 |
96.4%
|
Bifidobacterium pseudocatenulatum |
ORF16 | 558 |
99.8%
|
99.6 |
99.8%
|
Bifidobacterium adolescentis |
ORF17 | 35 |
99.8%
|
99.7 |
99.8%
|
Bifidobacterium adolescentis |
ORF18 | 22 |
99.1%
|
65.7 |
99.1%
|
Bifidobacterium pseudocatenulatum |
ORF19 | 1000 |
99.9%
|
99.8 |
99.9%
|
Bifidobacterium adolescentis |
ORF20 | 270 |
99.1%
|
90.4 |
99.1%
|
Bifidobacterium pseudocatenulatum |
ORF21 | 208 |
99.6%
|
99.6 |
99.6%
|
Bifidobacterium adolescentis |
ORF22 | 5 |
99.2%
|
97.5 |
99.2%
|
Bifidobacterium adolescentis |
ORF23 | 404 |
84.8%
|
83.8 |
80.3%
|
Bifidobacterium pseudocatenulatum |
ORF24 | 361 |
97.3%
|
93.8 |
97.3%
|
Bifidobacterium pseudocatenulatum |
ORF25 | 1 |
68.0%
|
60.8 |
68.0%
|
Bifidobacterium thermophilum RBL67 |
ORF31 | 321 |
99.6%
|
99.3 |
99.6%
|
Bifidobacterium adolescentis |
ORF32 | 993 |
99.7%
|
88.8 |
99.7%
|
Bifidobacterium pseudocatenulatum |
ORF33 | 342 |
98.2%
|
82.1 |
96.0%
|
Bifidobacterium dentium ATCC 27679 |
ORF34 | 1000 |
99.7%
|
99.2 |
99.7%
|
Bifidobacterium adolescentis |
ORF35 | 953 |
99.7%
|
86.9 |
98.9%
|
Bifidobacterium pseudocatenulatum |
ORF36 | 1000 |
99.9%
|
99.7 |
99.9%
|
Bifidobacterium adolescentis |
ORF37 | 966 |
99.7%
|
93.2 |
99.5%
|
Bifidobacteriaceae bacterium NR047 |
BifidoAdolescentis.s6#1#42067
Based on Diamond results of each ORF against NR, details for each annotated ORFs (33/35)
ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
---|---|---|---|---|---|
%iden. | Coverage | Species | |||
ORF1 | 26 |
98.8%
|
98.8 |
98.8%
|
Bifidobacterium adolescentis |
ORF2 | 398 |
99.6%
|
99.2 |
99.6%
|
Bifidobacterium adolescentis |
ORF3 | 6 |
99.2%
|
99.2 |
99.2%
|
Bifidobacterium adolescentis |
ORF4 | 297 |
99.6%
|
97.9 |
99.6%
|
Bifidobacterium adolescentis |
ORF5 | 276 |
96.4%
|
97.7 |
95.1%
|
Bifidobacterium adolescentis |
ORF6 | 732 |
99.7%
|
98.8 |
99.7%
|
Bifidobacterium adolescentis |
ORF7 | 693 |
99.6%
|
95.8 |
99.6%
|
Bifidobacterium pseudocatenulatum |
ORF8 | 732 |
99.6%
|
96.4 |
99.6%
|
Bifidobacterium adolescentis |
ORF9 | 83 |
99.5%
|
99.5 |
99.5%
|
Bifidobacterium adolescentis |
ORF10 | 1000 |
99.8%
|
99.7 |
99.8%
|
Bifidobacterium adolescentis |
ORF11 | 988 |
99.9%
|
99.7 |
99.9%
|
Bifidobacterium adolescentis |
ORF12 | 1000 |
99.8%
|
85.9 |
99.8%
|
Bifidobacterium adolescentis |
ORF13 | 119 |
99.6%
|
87.2 |
98.5%
|
Bifidobacterium adolescentis |
ORF14 | 40 |
99.6%
|
99.3 |
99.6%
|
Bifidobacterium adolescentis |
ORF15 | 583 |
99.7%
|
95.9 |
98.8%
|
Bifidobacterium adolescentis |
ORF17 | 16 |
99.7%
|
96.5 |
99.7%
|
Bifidobacterium adolescentis |
ORF18 | 999 |
99.7%
|
97.6 |
99.7%
|
Bifidobacterium adolescentis |
ORF19 | 3 |
99.4%
|
97.1 |
99.4%
|
Bifidobacterium adolescentis |
ORF20 | 182 |
99.7%
|
97.9 |
99.7%
|
Bifidobacterium adolescentis |
ORF21 | 707 |
99.9%
|
97.7 |
99.9%
|
Bifidobacterium adolescentis |
ORF22 | 1000 |
93.8%
|
99.0 |
93.8%
|
Bifidobacterium |
ORF23 | 249 |
99.6%
|
96.9 |
99.6%
|
Bifidobacterium adolescentis |
ORF24 | 1000 |
99.7%
|
97.4 |
99.7%
|
Bifidobacterium adolescentis |
ORF25 | 389 |
99.4%
|
99.4 |
99.4%
|
Bifidobacterium adolescentis |
ORF26 | 58 |
98.9%
|
91.1 |
98.9%
|
Bifidobacterium dentium ATCC 27679 |
ORF27 | 516 |
99.6%
|
98.8 |
99.6%
|
Bifidobacterium adolescentis |
ORF29 | 755 |
99.6%
|
98.7 |
99.6%
|
Bifidobacterium adolescentis |
ORF30 | 515 |
99.7%
|
97.6 |
99.7%
|
Bifidobacterium adolescentis |
ORF31 | 919 |
99.7%
|
99.7 |
99.7%
|
Bifidobacterium adolescentis |
ORF32 | 1 |
54.9%
|
97.8 |
54.9%
|
Bifidobacterium adolescentis |
ORF33 | 28 |
99.6%
|
98.7 |
99.6%
|
Bifidobacterium adolescentis |
ORF34 | 998 |
99.8%
|
99.8 |
99.8%
|
Bifidobacterium adolescentis |
BifidoAdolescentis.s2#1#35132
Based on Diamond results of each ORF against NR, details for each annotated ORFs (21/38)
ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
---|---|---|---|---|---|
%iden. | Coverage | Species | |||
ORF1 | 168 |
99.5%
|
99.5 |
99.5%
|
Bifidobacterium adolescentis |
ORF2 | 499 |
99.5%
|
100.0 |
99.5%
|
Bifidobacterium adolescentis |
ORF3 | 707 |
99.7%
|
100.0 |
99.7%
|
Bifidobacterium adolescentis |
ORF5 | 607 |
99.5%
|
100.0 |
99.5%
|
Bifidobacterium adolescentis |
ORF6 | 504 |
99.5%
|
50.3 |
98.7%
|
Frankia casuarinae |
ORF7 | 51 |
99.7%
|
57.8 |
98.7%
|
Mycobacterium bovis |
ORF9 | 471 |
99.8%
|
85.9 |
99.8%
|
Bifidobacterium longum |
ORF11 | 13 |
74.7%
|
33.0 |
73.7%
|
Agrobacterium fabrum |
ORF12 | 53 |
96.9%
|
49.4 |
96.9%
|
Mycobacterium tuberculosis |
ORF13 | 622 |
68.2%
|
86.2 |
65.2%
|
Bifidobacterium longum |
ORF16 | 20 |
93.5%
|
35.7 |
91.6%
|
Candida albicans |
ORF19 | 25 |
94.4%
|
38.3 |
94.4%
|
Mycobacterium leprae |
ORF20 | 4 |
94.0%
|
51.8 |
94.0%
|
Streptomyces coelicolor |
ORF23 | 3 |
78.5%
|
46.3 |
78.5%
|
Mycobacterium tuberculosis |
ORF24 | 8 |
93.3%
|
47.4 |
89.3%
|
Corynebacterium efficiens |
ORF32 | 587 |
99.7%
|
100.0 |
99.7%
|
Bifidobacterium adolescentis |
ORF34 | 699 |
99.7%
|
69.9 |
99.5%
|
Bifidobacterium longum |
ORF35 | 250 |
99.7%
|
100.0 |
99.7%
|
Bifidobacterium adolescentis |
ORF36 | 67 |
99.0%
|
51.8 |
97.6%
|
Mycobacterium leprae |
ORF37 | 48 |
99.2%
|
58.5 |
98.6%
|
Renibacterium salmoninarum |
BifidoAdolescentis.s6#1#42067
Based on Diamond results of each ORF against NR, details for each annotated ORFs (19/35)
ORF | HSP | Max coverage | Best HSP (max. of %iden * coverage) | ||
---|---|---|---|---|---|
%iden. | Coverage | Species | |||
ORF2 | 12 |
89.2%
|
35.6 |
85.4%
|
Staphylococcus epidermidis |
ORF4 | 17 |
88.9%
|
31.5 |
78.7%
|
Rhodospirillum centenum |
ORF6 | 103 |
98.8%
|
31.1 |
98.5%
|
Escherichia coli |
ORF7 | 10 |
96.8%
|
40.4 |
95.4%
|
Thermoanaerobacterium thermosulfurigenes |
ORF8 | 6 |
99.3%
|
39.2 |
95.4%
|
Thermoanaerobacterium thermosulfurigenes |
ORF10 | 52 |
97.9%
|
33.7 |
94.8%
|
Parageobacillus thermoglucosidasius |
ORF11 | 7 |
97.2%
|
43.0 |
97.2%
|
Mycobacterium bovis |
ORF12 | 40 |
84.9%
|
36.5 |
84.3%
|
Thermotoga maritima |
ORF15 | 100 |
97.1%
|
28.4 |
96.5%
|
Vibrio vulnificus |
ORF21 | 20 |
73.0%
|
46.0 |
73.0%
|
Pseudomonas aeruginosa |
ORF22 | 1000 |
99.8%
|
100.0 |
99.8%
|
Bifidobacterium adolescentis |
ORF23 | 47 |
99.6%
|
100.0 |
99.6%
|
Bifidobacterium adolescentis |
ORF24 | 593 |
97.7%
|
40.5 |
96.2%
|
Clostridium beijerinckii |
ORF25 | 1 |
73.2%
|
45.9 |
73.2%
|
Streptomyces coelicolor |
ORF27 | 1 |
74.3%
|
29.3 |
74.3%
|
Bacillus subtilis |
ORF29 | 4 |
91.9%
|
30.2 |
91.9%
|
Escherichia coli |
ORF30 | 1 |
73.6%
|
37.4 |
73.6%
|
Butyrivibrio fibrisolvens |
ORF31 | 27 |
80.8%
|
45.1 |
80.8%
|
Mycobacterium bovis |
ORF34 | 291 |
99.8%
|
100.0 |
99.8%
|
Bifidobacterium adolescentis |
BifidoAdolescentis.s2#1#35132
Based on Rps-Blast results against COGs database, details for each COGs categories found.
COGs category | ORFs | COGs (Best hit) |
---|---|---|
DNA replication, recombination, and repair | ORF1 | COG0817, RuvC, Holliday junction resolvasome, endonuclease subunit | ORF2 | COG0632, RuvA, Holliday junction resolvasome, DNA-binding subunit | ORF3 | COG2255, RuvB, Holliday junction resolvasome, helicase subunit | ORF19 | COG4581, Superfamily II RNA helicase |
Carbohydrate transport and metabolism | ORF16 | COG4284, UDP-glucose pyrophosphorylase | ORF36 | COG0021, TktA, Transketolase | ORF37 | COG0176, MipB, Transaldolase |
Energy production and conversion | ORF6 | COG0045, SucC, Succinyl-CoA synthetase, beta subunit | ORF7 | COG0074, SucD, Succinyl-CoA synthetase, alpha subunit |
Transcription | ORF23 | COG0789, SoxR, Predicted transcriptional regulators | ORF35 | COG1420, HrcA, Transcriptional regulator of heat shock gene |
General function prediction only | ORF13 | COG1160, Predicted GTPases | ORF21 | COG0546, Gph, Predicted phosphatases |
Translation, ribosomalstructure and biogenesis | ORF12 | COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
Nucleotide transportand metabolism | ORF9 | COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
Carbohydrate transportand metabolism | ORF11 | COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
Intracellular trafficking and secretion | ORF4 | COG1862, YajC, Preprotein translocase subunit YajC |
Posttranslational modification, protein turnover,chaperones | ORF34 | COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain |
Function unknown | ORF33 | COG3001, Uncharacterized protein conserved in bacteria |
Amino acid transport and metabolism | ORF38 | COG0436, Aspartate/tyrosine/aromatic aminotransferase |
Nucleotide transport and metabolism | ORF5 | COG0503, Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins |
Lipid transport and metabolism | ORF32 | COG1968, BacA, Undecaprenyl pyrophosphate phosphatase |
Signal transduction mechanisms | ORF24 | COG1716, FOG: FHA domain |
BifidoAdolescentis.s6#1#42067
Based on Rps-Blast results against COGs database, details for each COGs categories found.
COGs category | ORFs | COGs (Best hit) |
---|---|---|
Carbohydrate transport and metabolism | ORF5 | COG1653, UgpB, ABC-type sugar transport system, periplasmic component | ORF7 | COG1175, UgpA, ABC-type sugar transport systems, permease components | ORF8 | COG0395, UgpE, ABC-type sugar transport system, permease component | ORF10 | COG0366, AmyA, Glycosidases | ORF11 | COG1640, MalQ, 4-alpha-glucanotransferase | ORF12 | COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases |
General function prediction only | ORF4 | COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases | ORF13 | COG1011, Predicted hydrolase (HAD superfamily) | ORF20 | COG0730, Predicted permeases | ORF27 | COG0637, Predicted phosphatase/phosphohexomutase | ORF31 | COG0313, Predicted methyltransferases |
Transcription | ORF6 | COG1609, PurR, Transcriptional regulators | ORF15 | COG1609, PurR, Transcriptional regulators | ORF25 | COG0789, SoxR, Predicted transcriptional regulators |
Posttranslational modification, protein turnover, chaperones | ORF22 | COG0443, DnaK, Molecular chaperone | ORF23 | COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) |
Translation, ribosomal structure and biogenesis | ORF34 | COG0143, MetG, Methionyl-tRNA synthetase |
Function unknown | ORF29 | COG0586, DedA, Uncharacterized membrane-associated protein |
Cell envelope biogenesis, outer membrane | ORF18 | COG3764, SrtA, Sortase (surface protein transpeptidase) |
Lipid metabolism | ORF30 | COG0657, Aes, Esterase/lipase |
Energy production and conversion | ORF2 | COG0778, NfnB, Nitroreductase |
Inorganic ion transport and metabolism | ORF21 | COG1785, PhoA, Alkaline phosphatase |
Posttranslational modification, protein turnover,chaperones | ORF24 | COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain |